Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002126.1 Hibiscus syriacus cultivar Beakdansim tig00004355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1482737
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 8
Found at i:615788 original size:20 final size:20
Alignment explanation
Indices: 615708--615807 Score: 85
Period size: 20 Copynumber: 4.8 Consensus size: 20
615698 AGGGCTTATT
615708 TAATTAAAAATAAAAATAAAA
1 TAATTAAAAAT-AAAATAAAA
* *
615729 AAATTAAATTCAA-AATATAAAGA
1 TAATTAAA---AATAAAATAAA-A
* * *
615752 TAATCAAAAACTTAAATATAA
1 TAATTAAAAA-TAAAATAAAA
615773 TAATTAAAAATAAAATAAAA
1 TAATTAAAAATAAAATAAAA
*
615793 TAATTCAAAATAAAA
1 TAATTAAAAATAAAA
615808 AATATATATT
Statistics
Matches: 62, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
20 24 0.39
21 17 0.27
22 12 0.19
23 7 0.11
24 2 0.03
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (20 bp):
TAATTAAAAATAAAATAAAA
Found at i:616428 original size:142 final size:143
Alignment explanation
Indices: 616155--616435 Score: 514
Period size: 142 Copynumber: 2.0 Consensus size: 143
616145 CTTCAAACGG
616155 CTCCAAACTCCTTCCAACAACCAAGAATGACTAGAAATCAACGAGGACGTATAAAAGGGGTATTC
1 CTCCAAACTCCTTCCAACAACCAAGAATGACTAGAAATCAACGAGGACGTATAAAAGGGGTATTC
616220 AAACAACCAATAAGAGACAAGAAAACTATTCCAACAATCAACGAGCAATTAGAGCCAAATTTATT
66 AAACAACCAATAAGAGACAAGAAAACTATTCCAACAATCAACGAGCAATTAGAGCCAAATTTATT
616285 CCCTTGTGTCTTT
131 CCCTTGTGTCTTT
616298 CTCCAAACT-CTTCCAACAACCAAGAATGACTAGAAATC-ACGAGGGACGTATAAAAGGGGTATT
1 CTCCAAACTCCTTCCAACAACCAAGAATGACTAGAAATCAACGA-GGACGTATAAAAGGGGTATT
*
616361 CAAA-AACCAATAAGAGACAAGAAAACTATTCCAACAATCAACGAGCAATTAGAGCCAATTTATA
65 CAAACAACCAATAAGAGACAAGAAAACTATTCCAACAATCAACGAGCAATTAGAGCCAAATT-TA
616425 TTCCCTTGTGT
129 TTCCCTTGTGT
616436 TCTTACTTAC
Statistics
Matches: 135, Mismatches: 1, Indels: 5
0.96 0.01 0.04
Matches are distributed among these distances:
141 60 0.44
142 66 0.49
143 9 0.07
ACGTcount: A:0.42, C:0.22, G:0.15, T:0.21
Consensus pattern (143 bp):
CTCCAAACTCCTTCCAACAACCAAGAATGACTAGAAATCAACGAGGACGTATAAAAGGGGTATTC
AAACAACCAATAAGAGACAAGAAAACTATTCCAACAATCAACGAGCAATTAGAGCCAAATTTATT
CCCTTGTGTCTTT
Found at i:618084 original size:17 final size:17
Alignment explanation
Indices: 618058--618099 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
618048 TGAAGCTTCA
618058 AAGAAAAGAAGAAGAAG
1 AAGAAAAGAAGAAGAAG
* *
618075 AAGGAAAGAAGGAGAAG
1 AAGAAAAGAAGAAGAAG
618092 AAGAAAAG
1 AAGAAAAG
618100 GAATATTGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AAGAAAAGAAGAAGAAG
Found at i:619897 original size:24 final size:25
Alignment explanation
Indices: 619870--619917 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
619860 TCTCTAAACA
619870 AATTTCAAAAT-TTTTTAAA-TTATG
1 AATTTC-AAATCTTTTTAAACTTATG
619894 AATTTCAAATCTTTTTAAACTTAT
1 AATTTCAAATCTTTTTAAACTTAT
619918 ATAATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.18
24 14 0.64
25 4 0.18
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTCAAATCTTTTTAAACTTATG
Found at i:622344 original size:54 final size:55
Alignment explanation
Indices: 622280--622390 Score: 206
Period size: 54 Copynumber: 2.0 Consensus size: 55
622270 GTTGGCCATT
*
622280 TTCTATAAACCAATTGACTATACAATTGGTATC-AAATATAGACTCATTGAAAGG
1 TTCTATAAACCAATTGACTATACAATTGGTATCAAAATATAAACTCATTGAAAGG
622334 TTCTATAAACCAATTGACTATACAATTGGTATCAAAATATAAACTCATTGAAAGG
1 TTCTATAAACCAATTGACTATACAATTGGTATCAAAATATAAACTCATTGAAAGG
622389 TT
1 TT
622391 TTACCATCTC
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 33 0.60
55 22 0.40
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (55 bp):
TTCTATAAACCAATTGACTATACAATTGGTATCAAAATATAAACTCATTGAAAGG
Found at i:622426 original size:35 final size:35
Alignment explanation
Indices: 622380--622449 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
622370 ATATAAACTC
*
622380 ATTGAAAGGTTTTACCATCTCTTGAGAAGATTATA
1 ATTGAAAGGTTTTACCACCTCTTGAGAAGATTATA
622415 ATTGAAAGGTTTTACCACCTCTTGAGAAGATTATA
1 ATTGAAAGGTTTTACCACCTCTTGAGAAGATTATA
622450 GAAGAGTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (35 bp):
ATTGAAAGGTTTTACCACCTCTTGAGAAGATTATA
Found at i:623809 original size:23 final size:23
Alignment explanation
Indices: 623763--623845 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 23
623753 CTCGTATAAA
* ** *
623763 TGCACCGAAGTGCAATGTAGGAT
1 TGCACCGAAGTGCCACATAAGAT
623786 TGCACCGAAGTGCCACATAAGAT
1 TGCACCGAAGTGCCACATAAGAT
* * * *
623809 TGTACCAAAGTGCCGCAT-AGAAA
1 TGCACCGAAGTGCCACATAAG-AT
*
623832 TGCACTGAAGTGCC
1 TGCACCGAAGTGCC
623846 GCGTAGAAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 2 0.04
23 46 0.96
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (23 bp):
TGCACCGAAGTGCCACATAAGAT
Found at i:623846 original size:23 final size:23
Alignment explanation
Indices: 623816--623868 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
623806 GATTGTACCA
* *
623816 AAGTGCCGCATAGAAATGCACTG
1 AAGTGCCGCATAGAAATACACCG
*
623839 AAGTGCCGCGTAGAAATACACCG
1 AAGTGCCGCATAGAAATACACCG
623862 AAGTGCC
1 AAGTGCC
623869 ATATAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.26, T:0.15
Consensus pattern (23 bp):
AAGTGCCGCATAGAAATACACCG
Found at i:624800 original size:20 final size:23
Alignment explanation
Indices: 624750--624800 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
624740 CTCACATCAT
624750 ATAA-CATATAATACGAACCAAGC
1 ATAATCATATAATACGAA-CAAGC
*
624773 ATATTCATATAATAC-AA-AA-C
1 ATAATCATATAATACGAACAAGC
624793 ATAATCAT
1 ATAATCAT
624801 GCTTCTAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 8 0.32
21 2 0.08
23 5 0.20
24 10 0.40
ACGTcount: A:0.53, C:0.18, G:0.04, T:0.25
Consensus pattern (23 bp):
ATAATCATATAATACGAACAAGC
Found at i:625188 original size:14 final size:14
Alignment explanation
Indices: 625169--625195 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
625159 CTTGCCTGTG
625169 GGTATCGATACACA
1 GGTATCGATACACA
625183 GGTATCGATACAC
1 GGTATCGATACAC
625196 TCCTTAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (14 bp):
GGTATCGATACACA
Found at i:631622 original size:23 final size:21
Alignment explanation
Indices: 631570--631631 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
631560 TTTTGGTGCA
*
631570 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
631590 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
631611 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
631632 CACAGGGGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:646557 original size:18 final size:17
Alignment explanation
Indices: 646530--646596 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 17
646520 TCCGAATGGA
646530 TAAA-TTAATCAAGAATT
1 TAAATTTAATCAA-AATT
646547 TAAATTTAATC-AAATT
1 TAAATTTAATCAAAATT
* *
646563 GATAAATTCAATCCAAAAGT
1 --TAAATTTAAT-CAAAATT
646583 TAAATTTAATCAAA
1 TAAATTTAATCAAA
646597 TGGATAAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
16 4 0.10
17 9 0.21
18 24 0.57
19 1 0.02
20 4 0.10
ACGTcount: A:0.52, C:0.09, G:0.04, T:0.34
Consensus pattern (17 bp):
TAAATTTAATCAAAATT
Found at i:646589 original size:36 final size:36
Alignment explanation
Indices: 646524--646617 Score: 147
Period size: 36 Copynumber: 2.6 Consensus size: 36
646514 GAGAGATCCG
*
646524 AATGGATAAATT-AAT-CAAGAATTTAAATTTAATCA
1 AATGGATAAATTCAATCCAA-AAGTTAAATTTAATCA
*
646559 AATTGATAAATTCAATCCAAAAGTTAAATTTAATCA
1 AATGGATAAATTCAATCCAAAAGTTAAATTTAATCA
646595 AATGGATAAATTCAATCCAAAAG
1 AATGGATAAATTCAATCCAAAAG
646618 GCTTAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
35 11 0.20
36 40 0.74
37 3 0.06
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.31
Consensus pattern (36 bp):
AATGGATAAATTCAATCCAAAAGTTAAATTTAATCA
Found at i:646604 original size:18 final size:18
Alignment explanation
Indices: 646547--646611 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
646537 ATCAAGAATT
* *
646547 TAAATTTAATCAAATTGA
1 TAAATTCAATCAAATAGA
*
646565 TAAATTCAATCCAAA-AGT
1 TAAATTCAAT-CAAATAGA
* *
646583 TAAATTTAATCAAATGGA
1 TAAATTCAATCAAATAGA
646601 TAAATTCAATC
1 TAAATTCAATC
646612 CAAAAGGCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 4 0.11
18 30 0.79
19 4 0.11
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (18 bp):
TAAATTCAATCAAATAGA
Found at i:658680 original size:2 final size:2
Alignment explanation
Indices: 658673--658700 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
658663 ATATAACATA
658673 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
658701 TATGTAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:659973 original size:26 final size:26
Alignment explanation
Indices: 659934--659994 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 26
659924 TTTTATTTTA
659934 TTTTTATTTTAAAAAATAAAATA-AT
1 TTTTTATTTTAAAAAATAAAATATAT
* *
659959 TTTTTATTTTAAAAAATTAAATATTT
1 TTTTTATTTTAAAAAATAAAATATAT
659985 TTTTTATTTT
1 TTTTTATTTT
659995 TAGTAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
25 22 0.67
26 11 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
TTTTTATTTTAAAAAATAAAATATAT
Found at i:660392 original size:2 final size:2
Alignment explanation
Indices: 660385--660428 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
660375 ATTCTAAATA
660385 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
660427 AT
1 AT
660429 TTAAACAGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:675331 original size:14 final size:14
Alignment explanation
Indices: 675314--675347 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
675304 AAAGAAAAAA
675314 GACAACCGACAATT
1 GACAACCGACAATT
*
675328 GACAACCGACGATT
1 GACAACCGACAATT
675342 GACAAC
1 GACAAC
675348 TAATATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.29, G:0.18, T:0.12
Consensus pattern (14 bp):
GACAACCGACAATT
Found at i:676888 original size:29 final size:29
Alignment explanation
Indices: 676847--676923 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
676837 GAGGAGCAGG
676847 AGGAGTGCATGGCGACCTACAAGGTCCCC
1 AGGAGTGCATGGCGACCTACAAGGTCCCC
*
676876 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCCCC
676905 AGGAGTGCATGGCGACCTA
1 AGGAGTGCATGGCGACCTA
676924 TGCTGGGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (29 bp):
AGGAGTGCATGGCGACCTACAAGGTCCCC
Found at i:688795 original size:128 final size:129
Alignment explanation
Indices: 688560--688822 Score: 478
Period size: 128 Copynumber: 2.0 Consensus size: 129
688550 TCCAAATTCT
688560 ATCATGTTTCCATTACCCATAACACACCTCAGTTCAAAAGGAATTTGACTCAATAGCCCGAGTTG
1 ATCATGTTTCCATTACCCATAACACACCTCAGTTCAAAAGGAATTTGACTCAATAGCCCGAGTTG
688625 GATTCACAATATTACGCCAAATCCAAGATGCGTTTTTATTTTTTACAGCTTTTGGAATAATCGA
66 GATTCACAATATTACGCCAAATCCAAGATGCGTTTTTATTTTTTACAGCTTTTGGAATAATCGA
*
688689 ATCATG-TTCCATTACCCATAACACACCTCA-TTCAGAAGGAATTTTGACTCAATAGCCCGAGTT
1 ATCATGTTTCCATTACCCATAACACACCTCAGTTCAAAAGGAA-TTTGACTCAATAGCCCGAGTT
688752 GGATTCAC-ATATTACGCCAAATCCAAGATGCGTTTTTTATTTTTTACAGCTTTTGGAATAATCG
65 GGATTCACAATATTACGCCAAATCCAAGATGCG-TTTTTATTTTTTACAGCTTTTGGAATAATCG
688816 A
129 A
688817 ATCATG
1 ATCATG
688823 GTCATAGTTA
Statistics
Matches: 131, Mismatches: 1, Indels: 5
0.96 0.01 0.04
Matches are distributed among these distances:
127 34 0.26
128 91 0.69
129 6 0.05
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (129 bp):
ATCATGTTTCCATTACCCATAACACACCTCAGTTCAAAAGGAATTTGACTCAATAGCCCGAGTTG
GATTCACAATATTACGCCAAATCCAAGATGCGTTTTTATTTTTTACAGCTTTTGGAATAATCGA
Found at i:691763 original size:80 final size:80
Alignment explanation
Indices: 691630--691798 Score: 320
Period size: 80 Copynumber: 2.1 Consensus size: 80
691620 GACCAGGCTC
691630 AACATAAACCCAGATTCTTGGGTTTTACTTTTACTGGGTATTTCTTTCTGTCTAAACCGACTTAG
1 AACATAAACCCAGATTCTTGGGTTTTACTTTTACTGGGTATTTCTTTCTGTCTAAACCGACTTAG
691695 GTCAACCGATCTACA
66 GTCAACCGATCTACA
691710 AACATAAACCCAGATTCTTGGGTTTTACTTTTACTGGGTATTTCTTTCTGTCTAAACCGACTTAG
1 AACATAAACCCAGATTCTTGGGTTTTACTTTTACTGGGTATTTCTTTCTGTCTAAACCGACTTAG
691775 GTCAACCGATCTACA
66 GTCAACCGATCTACA
* *
691790 TATATAAAC
1 AACATAAAC
691799 ATCAATCACA
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (80 bp):
AACATAAACCCAGATTCTTGGGTTTTACTTTTACTGGGTATTTCTTTCTGTCTAAACCGACTTAG
GTCAACCGATCTACA
Found at i:693849 original size:15 final size:16
Alignment explanation
Indices: 693831--693874 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
693821 TATCAAAAGT
693831 AATAATAATAAAAT-A
1 AATAATAATAAAATGA
693846 AATAATAATTAAAATGA
1 AATAATAA-TAAAATGA
*
693863 AAGAA-AATAAAA
1 AATAATAATAAAA
693875 GTAATAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 13 0.50
16 8 0.31
17 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AATAATAATAAAATGA
Found at i:695366 original size:2 final size:2
Alignment explanation
Indices: 695359--695384 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
695349 TAGCAGTTTC
695359 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
695385 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:699382 original size:26 final size:27
Alignment explanation
Indices: 699333--699387 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
699323 AAACATATAT
* *
699333 AATATATATTTTTTGAAATGTTTTTGAA
1 AATATATATATTATGAAA-GTTTTTGAA
699361 AATATATATATTAT-AAA-TTTTTGAA
1 AATATATATATTATGAAAGTTTTTGAA
699386 AA
1 AA
699388 CATTTTTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.40
27 3 0.12
28 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (27 bp):
AATATATATATTATGAAAGTTTTTGAA
Found at i:699455 original size:38 final size:37
Alignment explanation
Indices: 699286--699616 Score: 256
Period size: 38 Copynumber: 8.9 Consensus size: 37
699276 TCGGTTTTTG
*
699286 AAATATATATAATATATAATTTTTGAAAATATTTT-AA
1 AAATATATATAATATAT-AGTTTTGAAAATATTTTGAA
* * *
699323 AAACATATATAATATATATTTTTTG-AAATGTTTTTG-A
1 AAATATATATAATATATA-GTTTTGAAAAT-ATTTTGAA
* * * *
699360 AAATATATATATTATAAATTTTTGAAAACATTTTTGAA
1 AAATATATATAATATATAGTTTTGAAAATA-TTTTGAA
*
699398 TATATATATATATATTATATAGTTTTGAAAATATTTTGAA
1 -A-A-ATATATATAATATATAGTTTTGAAAATATTTTGAA
699438 AACATATATATAATATATAGTTTTTGAAAATAATTTT--A
1 AA-ATATATATAATATATAG-TTTTGAAAAT-ATTTTGAA
** *
699476 AAA-ATATAT--TATATAGTTTT-AATTTTTTTTG-A
1 AAATATATATAATATATAGTTTTGAAAATATTTTGAA
* *
699508 AAACATATAT--TATATAGTTTTAAAAATGATTTTTG-A
1 AAATATATATAATATATAGTTTTGAAAAT-A-TTTTGAA
* * * *
699544 AAATATATATATTATATGGTTTTGAAAACCATTTTTAA
1 AAATATATATAATATATAGTTTTGAAAA-TATTTTGAA
** *
699582 AAGCATATATAATATATAGTTTTAAAAATGATTTT
1 AAATATATATAATATATAGTTTTGAAAAT-ATTTT
699617 TTTACTATAT
Statistics
Matches: 244, Mismatches: 29, Indels: 41
0.78 0.09 0.13
Matches are distributed among these distances:
31 4 0.02
32 7 0.03
33 21 0.09
34 10 0.04
36 32 0.13
37 55 0.23
38 65 0.27
39 12 0.05
40 13 0.05
41 25 0.10
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (37 bp):
AAATATATATAATATATAGTTTTGAAAATATTTTGAA
Found at i:699516 original size:105 final size:107
Alignment explanation
Indices: 699407--699606 Score: 275
Period size: 105 Copynumber: 1.9 Consensus size: 107
699397 ATATATATAT
* * *
699407 ATATATTATATAGTTTTGAAAAT-A-TTTTGAAAACATATATATAATATATAGTTTTTGAAAA-T
1 ATATATTATATAGTTTTAAAAATGATTTTTG-AAA-ATATATATAATATAT-GGTTTTGAAAACC
699469 AATTTTAAAA-ATATAT-TATATAGTTTTAATTTTTTTTGAAAAC
63 AATTTTAAAACATATATATATATAGTTTTAATTTTTTTTGAAAAC
* *
699512 ATATATTATATAGTTTTAAAAATGATTTTTGAAAATATATATATTATATGGTTTTGAAAACCATT
1 ATATATTATATAGTTTTAAAAATGATTTTTGAAAATATATATAATATATGGTTTTGAAAACCAAT
699577 TTTAAAAGCATATATAATATATAGTTTTAA
66 TTTAAAA-CATATAT-ATATATAGTTTTAA
699607 AAATGATTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
104 10 0.12
105 45 0.54
106 4 0.05
107 11 0.13
109 13 0.16
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (107 bp):
ATATATTATATAGTTTTAAAAATGATTTTTGAAAATATATATAATATATGGTTTTGAAAACCAAT
TTTAAAACATATATATATATAGTTTTAATTTTTTTTGAAAAC
Found at i:699617 original size:38 final size:37
Alignment explanation
Indices: 699280--699617 Score: 288
Period size: 37 Copynumber: 9.1 Consensus size: 37
699270 AAAAAATCGG
* *
699280 TTTTTG-AAATATATATAATATATAATTTTTGAAAATA
1 TTTTTGAAAACATATATAATATAT-AGTTTTGAAAATA
* * *
699317 -TTTTAAAAACATATATAATATATATTTTTTG-AAATG
1 TTTTTGAAAACATATATAATATATA-GTTTTGAAAATA
* * * * *
699353 TTTTTGAAAATATATATATTATAAATTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAATA
*
699390 TTTTTGAATATATATATATATATTATATAGTTTTGAAAATA
1 TTTTTGAA-A-ACATATATA-A-TATATAGTTTTGAAAATA
699431 -TTTTGAAAACATATATATAATATATAGTTTTTGAAAATA
1 TTTTTGAAAAC--ATATATAATATATAG-TTTTGAAAATA
* * *
699470 ATTTT-AAAA-ATATAT--TATATAGTTTT--AATTT
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAATA
*
699501 TTTTTGAAAACATATAT--TATATAGTTTTAAAAATGA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAAT-A
* * * *
699537 TTTTTGAAAATATATATATTATATGGTTTTGAAAACCA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAA-TA
*
699575 TTTTT-AAAAGCATATATAATATATAGTTTTAAAAATGA
1 TTTTTGAAAA-CATATATAATATATAGTTTTGAAAAT-A
699613 TTTTT
1 TTTTT
699618 TTACTATATA
Statistics
Matches: 251, Mismatches: 28, Indels: 43
0.78 0.09 0.13
Matches are distributed among these distances:
31 7 0.03
32 4 0.02
33 21 0.08
34 7 0.03
35 3 0.01
36 37 0.15
37 57 0.23
38 56 0.22
39 26 0.10
40 18 0.07
41 15 0.06
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (37 bp):
TTTTTGAAAACATATATAATATATAGTTTTGAAAATA
Found at i:699680 original size:25 final size:25
Alignment explanation
Indices: 699628--699684 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
699618 TTACTATATA
* *
699628 TTATATTATTATTATTTATTATTAT
1 TTATTTTATTAATATTTATTATTAT
*
699653 TTATTTTATTAATATTT-TTATTTGT
1 TTATTTTATTAATATTTATTA-TTAT
699678 TTATTTT
1 TTATTTT
699685 CGTTTCAGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (25 bp):
TTATTTTATTAATATTTATTATTAT
Found at i:701002 original size:15 final size:15
Alignment explanation
Indices: 700982--701011 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
700972 TATTTTATCA
700982 ATTTTATTTATCTTT
1 ATTTTATTTATCTTT
*
700997 ATTTTATTTTTCTTT
1 ATTTTATTTATCTTT
701012 TTTGTTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTTATTTATCTTT
Found at i:702097 original size:52 final size:54
Alignment explanation
Indices: 702013--702121 Score: 204
Period size: 52 Copynumber: 2.1 Consensus size: 54
702003 GTAGGACTTT
702013 TTTTATTTTTTTCATTATTGTTTTGATTATTATCCTTACCTCATAATTC-TTCC
1 TTTTATTTTTTTCATTATTGTTTTGATTATTATCCTTACCTCATAATTCTTTCC
702066 TTTTATTTTTTTCATTATTG-TTTGATTATTATCCTTACCTCATAATTCTTTCC
1 TTTTATTTTTTTCATTATTGTTTTGATTATTATCCTTACCTCATAATTCTTTCC
702119 TTT
1 TTT
702122 CGTTTTGTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 28 0.51
53 27 0.49
ACGTcount: A:0.18, C:0.17, G:0.04, T:0.61
Consensus pattern (54 bp):
TTTTATTTTTTTCATTATTGTTTTGATTATTATCCTTACCTCATAATTCTTTCC
Found at i:703773 original size:99 final size:99
Alignment explanation
Indices: 703660--703846 Score: 277
Period size: 99 Copynumber: 1.9 Consensus size: 99
703650 TTATAATATT
* * * **
703660 ATATGTATACAATAAAGCCTGAGATGTACCTCTAGAGCAATTGGTTAAAC-GCTCTGGCTTTATG
1 ATATATATACAATAAAGCCTGAGATGTACCTCTAGAGCAATTAGTTAAACAAC-CCAGCTTTATG
*
703724 GATAAGATTCAGCTAGCCTGATAAAGGTGATTATA
65 GATAAGATTCAGCTAGCCAGATAAAGGTGATTATA
* * *
703759 ATATATATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTAGTTAAACAACCCAGCTTTTTGG
1 ATATATATACAATAAAGCCTGAGATGTACCTCTAGAGCAATTAGTTAAACAACCCAGCTTTATGG
703824 ATAAGATTCAGCTAGCCAGATAA
66 ATAAGATTCAGCTAGCCAGATAA
703847 TGGCAAATTA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 77 0.99
100 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (99 bp):
ATATATATACAATAAAGCCTGAGATGTACCTCTAGAGCAATTAGTTAAACAACCCAGCTTTATGG
ATAAGATTCAGCTAGCCAGATAAAGGTGATTATA
Found at i:705450 original size:85 final size:85
Alignment explanation
Indices: 705067--705707 Score: 824
Period size: 85 Copynumber: 7.7 Consensus size: 85
705057 GAAAGTTATA
* *
705067 TGTCAGCAAAAACCTTCGAGTTCGATTACATGCAGCTCAAGGGCATATCAAATTTACAACATAGC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
*
705132 TCAAGGGGAGAAGGGCTATC
66 TCAAGGCGAGAAGGGCTATC
* * *
705152 TGTAAAAAAAAAAACCTTCGAGTTCGA-TACATTCAGCTCAAGGG--TATCAAATTTACAGCATA
1 TGT--CAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATA
*
705214 G--C---GCAAGAAGGGCTATC
64 GCTCAAGGCGAGAAGGGCTATC
* * *
705231 TGTCAACAAAAACCTT-GAGTTCGATTACATTCAGCTCAAGGTCATATTAAA-TTACAGCATAGC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
705294 TCAAGGCGAGAA-GGCTATC
66 TCAAGGCGAGAAGGGCTATC
* * * *
705313 TGTCAAC-AAAACCTTCGAGTTC-AATACATTCAGCTCAAGGGAATATCAAATTTACATCATAAC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
*
705376 TCAAGGCGAGAAGGGATATC
66 TCAAGGCGAGAAGGGCTATC
* * * * * *
705396 TATCAACAAAAACCTTCGCGTTCGATTGCATTTAGCTTAAGGGCATATCAAATTTACAACATAAC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
*
705461 TCAAGGCGAGAAGGGTTATC
66 TCAAGGCGAGAAGGGCTATC
** * *
705481 TGTCAGGAAAAACCTTTGAGTTCGATTACATTCAGCTTAAGGGCATATCAAATTTACAACATAGC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
*
705546 TCAAGGCGAGAAGGGCTACC
66 TCAAGGCGAGAAGGGCTATC
* * **
705566 AGT-AAAAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACTGCATAGC
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
* * *
705630 TCAAGGCGATAAGTGCTATA
66 TCAAGGCGAGAAGGGCTATC
* * * *
705650 TGTTAGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACA
1 TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACA
705708 GCAGCAAAAA
Statistics
Matches: 485, Mismatches: 55, Indels: 32
0.85 0.10 0.06
Matches are distributed among these distances:
76 8 0.02
77 27 0.06
78 11 0.02
79 22 0.05
80 1 0.00
81 32 0.07
82 43 0.09
83 18 0.04
84 105 0.22
85 183 0.38
86 16 0.03
87 19 0.04
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (85 bp):
TGTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGC
TCAAGGCGAGAAGGGCTATC
Found at i:705616 original size:169 final size:169
Alignment explanation
Indices: 705068--705707 Score: 797
Period size: 169 Copynumber: 3.8 Consensus size: 169
705058 AAAGTTATAT
* *
705068 GTCAGCAAAAACCTTCGAGTTCGATTACATGCAGCTCAAGGGCATATCAAATTTACAACATAGCT
1 GTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCT
* * *
705133 CAAGGGGAGAAGGGCTATCTGTAAAAAAAAAAACCTTCGAGTTCGA-TACATTCAGCTCAAGGG-
66 CAAGGCGAGAAGGGCTATCTGT---CAGAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGC
* * * *
705196 -TATCAAATTTACAGCATAG--C---GCAAGAAGGGCTATCT
128 ATATCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTACCA
* * *
705232 GTCAACAAAAACCTT-GAGTTCGATTACATTCAGCTCAAGGTCATATTAAA-TTACAGCATAGCT
1 GTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCT
* *
705295 CAAGGCGAGAA-GGCTATCTGTCA-ACAAAACCTTCGAGTTC-AATACATTCAGCTCAAGGGAAT
66 CAAGGCGAGAAGGGCTATCTGTCAGA-AAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCAT
* * * *
705357 ATCAAATTTACATCATAACTCAAGGCGAGAAGGGATATCTA
130 ATCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTA-CCA
* * * * *
705398 -TCAACAAAAACCTTCGCGTTCGATTGCATTTAGCTTAAGGGCATATCAAATTTACAACATAACT
1 GTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCT
* * *
705462 CAAGGCGAGAAGGGTTATCTGTCAGGAAAAACCTTTGAGTTCGATTACATTCAGCTTAAGGGCAT
66 CAAGGCGAGAAGGGCTATCTGTCA-GAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCAT
705527 ATCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTACCA
130 ATCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTACCA
* **
705567 GT-AAAAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACTGCATAGCT
1 GTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCT
* * * * * *
705631 CAAGGCGATAAGTGCTATATGTTAGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCAT
66 CAAGGCGAGAAGGGCTATCTGTCAG-AAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCAT
705696 ATCAAATTTACA
130 ATCAAATTTACA
705708 GCAGCAAAAA
Statistics
Matches: 412, Mismatches: 46, Indels: 31
0.84 0.09 0.06
Matches are distributed among these distances:
157 2 0.00
158 33 0.08
160 17 0.04
161 10 0.02
162 23 0.06
163 32 0.08
164 14 0.03
165 25 0.06
166 29 0.07
167 22 0.05
168 12 0.03
169 138 0.33
170 55 0.13
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (169 bp):
GTCAACAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCT
CAAGGCGAGAAGGGCTATCTGTCAGAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATA
TCAAATTTACAACATAGCTCAAGGCGAGAAGGGCTACCA
Found at i:705740 original size:56 final size:56
Alignment explanation
Indices: 705654--705766 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
705644 GCTATATGTT
705654 AGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGC
1 AGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGC
705710 AGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGC
1 AGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGC
705766 A
1 A
705767 TAGCTCAAGG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (56 bp):
AGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGC
Found at i:705799 original size:141 final size:141
Alignment explanation
Indices: 705572--705846 Score: 444
Period size: 141 Copynumber: 2.0 Consensus size: 141
705562 TACCAGTAAA
* *
705572 AAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACTGCATAGCTCAAGGC
1 AAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGC
* * * * *
705637 GATAAGTGCTATATGTTAGCAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAA
66 GAGAAGGGATATATGTTAGCAAAAACCTTCAAGTTCAATTACATTCAGCTCAAGGGCATATCAAA
705702 TTTACAGCAGC
131 TTTACAGCAGC
*
705713 AAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGGC
1 AAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGC
* *
705778 GAGAAGGGATATCT-TTCAGCAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAA
66 GAGAAGGGATATATGTT-AGCAAAAACCTTCAAGTTCAATTACATTCAGCTCAAGGGCATATCAA
705842 ATTTA
130 ATTTA
705847 TAACATAGGT
Statistics
Matches: 123, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
140 2 0.02
141 121 0.98
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (141 bp):
AAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGC
GAGAAGGGATATATGTTAGCAAAAACCTTCAAGTTCAATTACATTCAGCTCAAGGGCATATCAAA
TTTACAGCAGC
Found at i:705854 original size:85 final size:85
Alignment explanation
Indices: 705712--706079 Score: 475
Period size: 85 Copynumber: 4.3 Consensus size: 85
705702 TTTACAGCAG
* * *
705712 CAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGG
1 CAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCTCAAGG
* * *
705777 CGAGAAGGGATATCTTTCAG
66 CGAGAAGGGCTATCTGTCAA
* * *
705797 CAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTATAACATAGGTCAAGG
1 CAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCTCAAGG
*
705862 TGAGAAGGGCTATCTGTCAA
66 CGAGAAGGGCTATCTGTCAA
* * * * *
705882 CAAAAACCTTTGAGTTCGATTATATTCAGTTCAAGGGCATATCAAATTTACAGCATAGCTCATGG
1 CAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCTCAAGG
* * *
705947 CGAGAAGGGTTATCTATTAA
66 CGAGAAGGGCTATCTGTCAA
* * * * * *
705967 CTAAAACCTTTGAGTTCGATTACATTCAGCTCAAGGGTATATTAAATTTACAACTTAACTCAAGG
1 CAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCTCAAGG
* *
706032 AGAGAAGGGCTATATGTCAA
66 CGAGAAGGGCTATCTGTCAA
* *
706052 CGAAAACCTTCGAGTTTCAATTACATTC
1 CAAAAACCTTCGAG-TTCGATTACATTC
706080 TTCGATTTCA
Statistics
Matches: 243, Mismatches: 39, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
85 231 0.95
86 12 0.05
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (85 bp):
CAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAACATAGCTCAAGG
CGAGAAGGGCTATCTGTCAA
Found at i:705920 original size:226 final size:225
Alignment explanation
Indices: 705488--705936 Score: 668
Period size: 226 Copynumber: 2.0 Consensus size: 225
705478 ATCTGTCAGG
* *
705488 AAAAACCTTTGAGTTCGATTACATTCAGCTTAAGGGCATATCAAATTTACAACATAGCTCAAGGC
1 AAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAACATAGCTCAAGGC
* *
705553 GAGAAGGGCTACCAGTAAAAAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAAT
66 GAGAAGGGATACCAGTAAAAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAAAT
* * * * *
705618 TTACTGCATAGCTCAAGGCGATAAGTGCTATATGTTAGCAAAAACCTTCGAGTTCAATTACATTC
131 TTACTACATAGCTCAAGGCGAGAAGGGCTATATGTCAACAAAAACCTTCGAGTTCAATTACATTC
705683 AGCTTAAGGGCATATCAAATTTACAGCAGC
196 AGCTTAAGGGCATATCAAATTTACAGCAGC
*
705713 AAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGGC
1 AAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAACATAGCTCAAGGC
* ** **
705778 GAGAAGGGATATCTTTCAGCAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAAA
66 GAGAAGGGATACCAGT-AAAAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAAA
* * * * * *
705843 TTTA-TAACATAGGTCAAGGTGAGAAGGGCTATCTGTCAACAAAAACCTTTGAGTTCGATTATAT
130 TTTACT-ACATAGCTCAAGGCGAGAAGGGCTATATGTCAACAAAAACCTTCGAGTTCAATTACAT
705907 TCAG-TTCAAGGGCATATCAAATTTACAGCA
194 TCAGCTT-AAGGGCATATCAAATTTACAGCA
705937 TAGCTCATGG
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
225 77 0.38
226 123 0.62
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (225 bp):
AAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAACATAGCTCAAGGC
GAGAAGGGATACCAGTAAAAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAAAT
TTACTACATAGCTCAAGGCGAGAAGGGCTATATGTCAACAAAAACCTTCGAGTTCAATTACATTC
AGCTTAAGGGCATATCAAATTTACAGCAGC
Found at i:705940 original size:170 final size:170
Alignment explanation
Indices: 705712--706079 Score: 533
Period size: 170 Copynumber: 2.2 Consensus size: 170
705702 TTTACAGCAG
705712 CAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGG
1 CAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGG
*
705777 CGAGAAGGGATATCT-TTCAGCAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCA
66 CGAGAAGGGATATCTATT-AACAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCA
* ** * *
705841 AATTTATAACATAGGTCAAGGTGAGAAGGGCTATCTGTCAA
130 AATTTACAACATAACTCAAGGAGAGAAGGGCTATATGTCAA
* * * *
705882 CAAAAACCTTTGAGTTCGATTATATTCAG-TTCAAGGGCATATCAAATTTACAGCATAGCTCATG
1 CAAAAACCTTCGAGTTCAATTACATTCAGCTT-AAGGGCATATCAAATTTACAGCATAGCTCAAG
* * ** * *
705946 GCGAGAAGGGTTATCTATTAACTAAAACCTTTGAGTTCGATTACATTCAGCTCAAGGGTATATTA
65 GCGAGAAGGGATATCTATTAACAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCA
*
706011 AATTTACAACTTAACTCAAGGAGAGAAGGGCTATATGTCAA
130 AATTTACAACATAACTCAAGGAGAGAAGGGCTATATGTCAA
*
706052 CGAAAACCTTCGAGTTTCAATTACATTC
1 CAAAAACCTTCGAG-TTCAATTACATTC
706080 TTCGATTTCA
Statistics
Matches: 174, Mismatches: 21, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
169 2 0.01
170 159 0.91
171 13 0.07
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (170 bp):
CAAAAACCTTCGAGTTCAATTACATTCAGCTTAAGGGCATATCAAATTTACAGCATAGCTCAAGG
CGAGAAGGGATATCTATTAACAAAAACCTTCAAGTTCGATTACATTCAGCTCAAGGGCATATCAA
ATTTACAACATAACTCAAGGAGAGAAGGGCTATATGTCAA
Found at i:706789 original size:37 final size:36
Alignment explanation
Indices: 706736--707051 Score: 233
Period size: 37 Copynumber: 8.5 Consensus size: 36
706726 TTTGAAATAT
706736 ATATATAATA-ACTAGTTTTTGAAAACATTTTAAAAA
1 ATATATAATATA-TAGTTTTTGAAAACATTTTAAAAA
706772 CATATATAATATATAGTTTTTGAAAACATTTTAAAAA
1 -ATATATAATATATAGTTTTTGAAAACATTTTAAAAA
* *
706809 CATATATAATATATAGTTTTTGAAAACATTTT-GAAT
1 -ATATATAATATATAGTTTTTGAAAACATTTTAAAAA
* *
706845 ATATATATTAATATAG---TTGAAAATATTTTGAATATATATA
1 ATATATAAT-ATATAGTTTTTGAAAACATTTT--A-A-A-A-A
*
706885 TATATATATGATATATAGTTTTTGAAAATAATTTT-AAAA
1 -ATATATA--ATATATAGTTTTTGAAAA-CATTTTAAAAA
**
706924 ATATAT--TATATAG-TTTT-AAAACAATTTTTGAAA
1 ATATATAATATATAGTTTTTGAAAAC-ATTTTAAAAA
* * * **
706957 ATATATATTATATAG-TTTTAAAAATGATTTTTGAAA
1 ATATATAATATATAGTTTTTGAAAA-CATTTTAAAAA
* *
706993 ATATA-AATATTATATGATTTTGAAAACAATTTTTAAAAGC
1 ATATATAATA-TATA-GTTTTTGAAAAC-A-TTTTAAAA-A
707033 ATATATAATATATAGTTTT
1 ATATATAATATATAGTTTT
707052 AAAAATGATT
Statistics
Matches: 232, Mismatches: 18, Indels: 56
0.76 0.06 0.18
Matches are distributed among these distances:
32 9 0.04
33 25 0.11
34 7 0.03
35 22 0.09
36 31 0.13
37 67 0.29
38 17 0.07
39 12 0.05
40 10 0.04
41 12 0.05
42 7 0.03
43 1 0.00
45 7 0.03
46 5 0.02
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (36 bp):
ATATATAATATATAGTTTTTGAAAACATTTTAAAAA
Found at i:706935 original size:36 final size:35
Alignment explanation
Indices: 706895--707056 Score: 150
Period size: 38 Copynumber: 4.5 Consensus size: 35
706885 TATATATATG
*
706895 ATATATAGTTTTTGAAAATAA-TTTTAAAAATAT-A
1 ATATATAG-TTTTGAAAACAATTTTTAAAAATATAA
* *
706929 TTATATAGTTTT-AAAACAATTTTTGAAAATATATA
1 ATATATAGTTTTGAAAACAATTTTTAAAAATATA-A
* * ** *
706964 TTATATAGTTTTAAAAATGATTTTTGAAAATATAA
1 ATATATAGTTTTGAAAACAATTTTTAAAAATATAA
706999 ATATTATATGATTTTGAAAACAATTTTTAAAAGCATATATA
1 ATA-TATA-G-TTTTGAAAACAATTTTTAAAA--ATATA-A
*
707040 ATATATAGTTTTAAAAA
1 ATATATAGTTTTGAAAA
707057 TGATTTTTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
32 6 0.06
33 15 0.14
34 7 0.07
35 16 0.15
36 23 0.21
37 1 0.01
38 25 0.23
39 1 0.01
40 9 0.08
41 4 0.04
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.44
Consensus pattern (35 bp):
ATATATAGTTTTGAAAACAATTTTTAAAAATATAA
Found at i:706951 original size:78 final size:78
Alignment explanation
Indices: 706810--706970 Score: 204
Period size: 78 Copynumber: 2.1 Consensus size: 78
706800 TTTTAAAAAC
* * *
706810 ATATATAATATATAGTTTTTGAAAACATTTTGAATATATATATTAATATAGTTGAAAATA-TTTT
1 ATATATAATATATAGTTTTTGAAAAAATTTTGAATAAATATATTAATATAGTTGAAAAAATTTTT
*
706874 GAATATATATATAT
66 GAAAATATATAT-T
* *
706888 ATATATGATATATAGTTTTTGAAAATAATTTT-AA-AAATATATT-ATATAGTTTTAAAACAATT
1 ATATATAATATATAGTTTTTGAAAA-AATTTTGAATAAATATATTAATATAG-TTGAAAA-AATT
706950 TTTGAAAATATATATT
63 TTTGAAAATATATATT
706966 ATATA
1 ATATA
706971 GTTTTAAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
76 6 0.08
77 14 0.19
78 33 0.45
79 20 0.27
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (78 bp):
ATATATAATATATAGTTTTTGAAAAAATTTTGAATAAATATATTAATATAGTTGAAAAAATTTTT
GAAAATATATATT
Found at i:707063 original size:38 final size:35
Alignment explanation
Indices: 706888--707064 Score: 166
Period size: 36 Copynumber: 4.9 Consensus size: 35
706878 ATATATATAT
* * *
706888 ATATATGATATATAGTTTTTGAAAATAATTTTAAAA
1 ATATATAATATATAG-TTTTAAAAATATTTTTAAAA
*
706924 ATATAT--TATATAGTTTTAAAACA-ATTTTTGAAA
1 ATATATAATATATAGTTTTAAAA-ATATTTTTAAAA
* *
706957 ATATATATTATATAGTTTTAAAAATGATTTTTGAAA
1 ATATATAATATATAGTTTTAAAAAT-ATTTTTAAAA
706993 ATATA-AATATTATATGATTTTGAAAACA-ATTTTTAAAA
1 ATATATAATA-TATA-G-TTTT-AAAA-ATATTTTTAAAA
707031 GCATATATAATATATAGTTTTAAAAATGATTTTT
1 --ATATATAATATATAGTTTTAAAAAT-ATTTTT
707065 TATTATATTA
Statistics
Matches: 121, Mismatches: 5, Indels: 28
0.79 0.03 0.18
Matches are distributed among these distances:
33 21 0.17
34 9 0.07
35 18 0.15
36 26 0.21
37 5 0.04
38 23 0.19
39 5 0.04
40 10 0.08
41 4 0.03
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (35 bp):
ATATATAATATATAGTTTTAAAAATATTTTTAAAA
Found at i:707076 original size:3 final size:3
Alignment explanation
Indices: 707064--707117 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
707054 AAATGATTTT
*
707064 TTA TTA -TA TTA TTA TTA TTA TTTA TT- TTA TT- TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* *
707107 ATA TTA ATA TT
1 TTA TTA TTA TT
707118 TTTTATTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
2 6 0.15
3 32 0.78
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:707081 original size:76 final size:73
Alignment explanation
Indices: 706888--707064 Score: 222
Period size: 76 Copynumber: 2.4 Consensus size: 73
706878 ATATATATAT
* * *
706888 ATATATGATATATAGTTTTTGAAAAT-AATTTT-AAAA-AT--ATATTATATAGTTTTAAAACAA
1 ATATATAATATATAG-TTTTAAAAATGATTTTTGAAAATATAAATATTATATAGTTTTAAAACAA
*
706948 TTTTTGAAA
65 TTTTTAAAA
*
706957 ATATATATTATATAGTTTTAAAAATGATTTTTGAAAATATAAATATTATAT-GATTTTGAAAACA
1 ATATATAATATATAGTTTTAAAAATGATTTTTGAAAATATAAATATTATATAG-TTTT-AAAACA
707021 ATTTTTAAAA
64 ATTTTTAAAA
707031 GCATATATAATATATAGTTTTAAAAATGATTTTT
1 --ATATATAATATATAGTTTTAAAAATGATTTTT
707065 TATTATATTA
Statistics
Matches: 93, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
68 9 0.10
69 18 0.19
70 4 0.04
71 2 0.02
72 1 0.01
73 13 0.14
74 15 0.16
76 31 0.33
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (73 bp):
ATATATAATATATAGTTTTAAAAATGATTTTTGAAAATATAAATATTATATAGTTTTAAAACAAT
TTTTAAAA
Found at i:707098 original size:23 final size:22
Alignment explanation
Indices: 707067--707134 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 22
707057 TGATTTTTTA
*
707067 TTATATTATTATTATTATTTATT
1 TTATTTTATTA-TATTATTTATT
*
707090 TTATTTTATTAATATTA-ATATT
1 TTATTTTATT-ATATTATTTATT
*
707112 AATATTTT-TTAT-TTATTTATT
1 -TTATTTTATTATATTATTTATT
707133 TT
1 TT
707135 CGTTTCAGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
20 4 0.11
21 6 0.16
22 6 0.16
23 20 0.54
24 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (22 bp):
TTATTTTATTATATTATTTATT
Found at i:707099 original size:26 final size:26
Alignment explanation
Indices: 707062--707124 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
707052 AAAAATGATT
* * * *
707062 TTTTATTATATTATTATTATTATTTA
1 TTTTATTTTATTAATATTAATATTAA
707088 TTTTATTTTATTAATATTAATATTAA
1 TTTTATTTTATTAATATTAATATTAA
*
707114 TATT-TTTTATT
1 TTTTATTTTATT
707125 TATTTATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 7 0.22
26 25 0.78
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTATTTTATTAATATTAATATTAA
Found at i:708514 original size:21 final size:22
Alignment explanation
Indices: 708474--708515 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
708464 TATATGTCAT
*
708474 TATCATTCATATCTTTTATCAC
1 TATCATTCATATCCTTTATCAC
*
708496 TATCATTGAT-TCCTTTATCA
1 TATCATTCATATCCTTTATCA
708516 TATGATCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.50
Consensus pattern (22 bp):
TATCATTCATATCCTTTATCAC
Found at i:708749 original size:20 final size:20
Alignment explanation
Indices: 708720--708815 Score: 101
Period size: 20 Copynumber: 5.0 Consensus size: 20
708710 GCACTGAATA
708720 TTTGTCCCGAAGGACCACTG
1 TTTGTCCCGAAGGACCACTG
* *
708740 TTTGTTCCGAAGAACCAC--
1 TTTGTCCCGAAGGACCACTG
* *
708758 TATGTCCCGAAGGACCATTG
1 TTTGTCCCGAAGGACCACTG
* *
708778 TTTGTTCCGAAGAACCAC--
1 TTTGTCCCGAAGGACCACTG
*
708796 TATGTCCCGAAGGACCACTG
1 TTTGTCCCGAAGGACCACTG
708816 ATAATCCCTC
Statistics
Matches: 59, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
18 29 0.49
20 30 0.51
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (20 bp):
TTTGTCCCGAAGGACCACTG
Found at i:708769 original size:18 final size:18
Alignment explanation
Indices: 708722--708814 Score: 87
Period size: 18 Copynumber: 4.9 Consensus size: 18
708712 ACTGAATATT
*
708722 TGTCCCGAAGGACCACTGTT
1 TGTCCCGAAGGACCAC--TA
* *
708742 TGTTCCGAAGAACCACTA
1 TGTCCCGAAGGACCACTA
* *
708760 TGTCCCGAAGGACCATTGTT
1 TGTCCCGAAGGACCA--CTA
* *
708780 TGTTCCGAAGAACCACTA
1 TGTCCCGAAGGACCACTA
708798 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
708815 GATAATCCCT
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
18 30 0.52
20 28 0.48
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:708773 original size:38 final size:38
Alignment explanation
Indices: 708722--708815 Score: 179
Period size: 38 Copynumber: 2.5 Consensus size: 38
708712 ACTGAATATT
708722 TGTCCCGAAGGACCACTGTTTGTTCCGAAGAACCACTA
1 TGTCCCGAAGGACCACTGTTTGTTCCGAAGAACCACTA
*
708760 TGTCCCGAAGGACCATTGTTTGTTCCGAAGAACCACTA
1 TGTCCCGAAGGACCACTGTTTGTTCCGAAGAACCACTA
708798 TGTCCCGAAGGACCACTG
1 TGTCCCGAAGGACCACTG
708816 ATAATCCCTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
TGTCCCGAAGGACCACTGTTTGTTCCGAAGAACCACTA
Found at i:709773 original size:20 final size:22
Alignment explanation
Indices: 709748--709804 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
709738 AATGAAGGTT
709748 TGCATCGATGCACT-CT-ACAG
1 TGCATCGATGCACTCCTAACAG
* *
709768 TGCATCGATGCATTTCCTAACGG
1 TGCATCGATGCA-CTCCTAACAG
709791 TGCATCGATGCACT
1 TGCATCGATGCACT
709805 ACTTGTGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 12 0.39
21 1 0.03
22 3 0.10
23 15 0.48
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (22 bp):
TGCATCGATGCACTCCTAACAG
Found at i:709877 original size:44 final size:43
Alignment explanation
Indices: 709809--709910 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 43
709799 TGCACTACTT
* * *
709809 GTGCATCGGTGCACAAAATACATTCGATATT-TTACTATTAAGGG
1 GTGCATCGATGCACTAAATACATTCGATATTATT-CT-TTAAAGG
* * *
709853 GTGCATCGATGCACTAATTGCATTCGATGTTATTCTTTAAAGG
1 GTGCATCGATGCACTAAATACATTCGATATTATTCTTTAAAGG
*
709896 GTGCATCGATACACT
1 GTGCATCGATGCACT
709911 TCATGTGCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 20 0.40
44 28 0.56
45 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (43 bp):
GTGCATCGATGCACTAAATACATTCGATATTATTCTTTAAAGG
Found at i:711035 original size:4 final size:4
Alignment explanation
Indices: 711014--711094 Score: 64
Period size: 4 Copynumber: 20.0 Consensus size: 4
711004 TTTTCTTAAT
*
711014 TTTA TTTA TCTTA ATTA TTTA TTTA TTTA TTTTA TTTA TTT- TTT- TTT-
1 TTTA TTTA T-TTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
711061 TGTTA TTTA TATATA TTTCA TTTA -TTA TTT- TTTA
1 T-TTA TTTA T-T-TA TTT-A TTTA TTTA TTTA TTTA
711095 ACTTGTTAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
3 13 0.20
4 36 0.55
5 14 0.21
6 3 0.05
ACGTcount: A:0.23, C:0.02, G:0.01, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:711038 original size:21 final size:21
Alignment explanation
Indices: 711014--711054 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
711004 TTTTCTTAAT
711014 TTTATTTATCTTAATTATTTA
1 TTTATTTATCTTAATTATTTA
* *
711035 TTTATTTATTTTATTTATTT
1 TTTATTTATCTTAATTATTT
711055 TTTTTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTATTTATCTTAATTATTTA
Found at i:711047 original size:13 final size:13
Alignment explanation
Indices: 711012--711086 Score: 60
Period size: 13 Copynumber: 5.2 Consensus size: 13
711002 TATTTTCTTA
711012 ATTTTATTTATCTT
1 ATTTTATTTAT-TT
711026 AATTATTTATTTATTT
1 -A-T-TTTATTTATTT
711042 ATTTTATTTATTT
1 ATTTTATTTATTT
* *
711055 TTTTTTTGTTATTT
1 ATTTTAT-TTATTT
*
711069 ATATATATTTCATTT
1 AT-TTTATTT-ATTT
711084 ATT
1 ATT
711087 ATTTTTTAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
13 16 0.32
14 11 0.22
15 11 0.22
16 3 0.06
17 9 0.18
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:711084 original size:33 final size:31
Alignment explanation
Indices: 711032--711093 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 31
711022 TCTTAATTAT
* *
711032 TTATTTATTTATTTTATTTATTTTTTTTTTG
1 TTATTTATTTATTTCATTTATTATTTTTTTG
711063 TTATTTATATATATTTCATTTATTATTTTTT
1 TTATTTAT-T-TATTTCATTTATTATTTTTT
711094 AACTTGTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 8 0.30
32 1 0.04
33 18 0.67
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.76
Consensus pattern (31 bp):
TTATTTATTTATTTCATTTATTATTTTTTTG
Found at i:711600 original size:16 final size:16
Alignment explanation
Indices: 711579--711615 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
711569 TTCTCAATTT
711579 TATTAAATTATTATTA
1 TATTAAATTATTATTA
711595 TATTAAATTATTATTA
1 TATTAAATTATTATTA
*
711611 GATTA
1 TATTA
711616 TTATTATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
TATTAAATTATTATTA
Found at i:711633 original size:27 final size:27
Alignment explanation
Indices: 711574--711627 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
711564 TCCGATTCTC
711574 AATT-TTATTAAATTATTATTATATTA
1 AATTATTATTAAATTATTATTATATTA
*
711600 AATTATTATTAGATTATTATTATCATTA
1 AATTATTATTAAATTATTATTAT-ATTA
711628 TTTATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.16
27 17 0.68
28 4 0.16
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (27 bp):
AATTATTATTAAATTATTATTATATTA
Found at i:714031 original size:34 final size:34
Alignment explanation
Indices: 713982--714072 Score: 128
Period size: 34 Copynumber: 2.6 Consensus size: 34
713972 ACCCGCCCCG
713982 ATTATATATATATATAGTATTTATATTTTTTTATATTA
1 ATTATATATATA-ATA-T-TTTATA-TTTTTTATATTA
714020 ATTATATATATAATATTTTATATTTTTTATATTA
1 ATTATATATATAATATTTTATATTTTTTATATTA
* *
714054 ATTATATAAAAAATATTTT
1 ATTATATATATAATATTTT
714073 CGGGTTCAGG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
34 29 0.57
35 6 0.12
36 1 0.02
37 3 0.06
38 12 0.24
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (34 bp):
ATTATATATATAATATTTTATATTTTTTATATTA
Found at i:715111 original size:21 final size:20
Alignment explanation
Indices: 715081--715157 Score: 64
Period size: 23 Copynumber: 3.5 Consensus size: 20
715071 GATAAATACT
*
715081 TTACAATATAACCACTACCTA
1 TTACATTATAA-CACTACCTA
*
715102 TTACATTATATAAACGATACCTA
1 TTACATTATA-ACAC--TACCTA
*
715125 TTACATTATATAAGCGCTACCTA
1 TTACA-T-TATAA-CACTACCTA
715148 TTACATTATA
1 TTACATTATA
715158 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
21 15 0.33
22 2 0.04
23 22 0.48
24 2 0.04
25 5 0.11
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (20 bp):
TTACATTATAACACTACCTA
Found at i:715122 original size:23 final size:23
Alignment explanation
Indices: 715096--715158 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
715086 ATATAACCAC
715096 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
715119 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
715142 TACCTATTACATTATAT
1 TACCTATTACATTATAT
715159 TTTACCTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:715546 original size:23 final size:23
Alignment explanation
Indices: 715520--715582 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
715510 ATATAACCAC
715520 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
715543 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
715566 TACCTATTACATCATAT
1 TACCTATTACATTATAT
715583 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:715963 original size:23 final size:23
Alignment explanation
Indices: 715935--715983 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
715925 GATACTTTAC
715935 ATAT-AACCACTACCTATTACATT
1 ATATAAACCA-TACCTATTACATT
*
715958 ATATAAACGATACCTATTACATT
1 ATATAAACCATACCTATTACATT
715981 ATA
1 ATA
715984 AGCGCTACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (23 bp):
ATATAAACCATACCTATTACATT
Found at i:715992 original size:21 final size:21
Alignment explanation
Indices: 715931--715999 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 21
715921 GATAGATACT
* *
715931 TTACA-TATAACCACTACCTA
1 TTACATTATAAACGCTACCTA
*
715951 TTACATTATATAAACGATACCTA
1 TTACA-T-TATAAACGCTACCTA
*
715974 TTACATTATAAGCGCTACCTA
1 TTACATTATAAACGCTACCTA
715995 -TACAT
1 TTACAT
716000 ATTTTTTACC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
20 10 0.24
21 13 0.32
22 1 0.02
23 17 0.41
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.33
Consensus pattern (21 bp):
TTACATTATAAACGCTACCTA
Found at i:716203 original size:423 final size:426
Alignment explanation
Indices: 714921--716288 Score: 2494
Period size: 423 Copynumber: 3.2 Consensus size: 426
714911 ATGTTTATTG
714921 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
714986 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAGT
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAGT
*
715051 ATAGACACTTTTATAAAAATGATAAATACTTTACAATATAACCACTACCTATTACATTATATAAA
131 ATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAA
*
715116 CGATACCTATTACATTATATAAGCGCTACCTATTACATTATATTTTACCTATTATATTG-AAGTG
196 CGATACCTATTACATTATATAAGCGCTACCTATTACA-TATTTTTTACCTATTATATTGAAAGTG
715180 TCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTT
260 TCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTT
**
715245 TTAAGTA-TGTTTCATG-TTTCCACCTACAATA-TAATTTAATAATTTCATTTGTAC-AAAAATT
324 TTAA-TAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
715306 ATTTGATTG-TTTGATATTTTATAAAATAATATTTAGAA
388 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
*
715344 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACACCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
715409 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAG
*
715474 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
130 TATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
715539 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
195 ACGATACCTATTACATTATATAAGCGCTACCTATTACAT-AT-TTTTTACCTATTATATTGAAAG
*
715604 TGTCCATACTTTTAT-AAAATGATCGATACTTCTTTT-AAGTTATGTAATTTATGTTTCAATTTT
258 TGTCCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTT
715667 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
323 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
715732 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
388 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
715771 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
715836 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAGT
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAGT
715901 ATAGACACTTTTATAAAAATGATAGATACTTTAC-ATATAACCACTACCTATTACATTATATAAA
131 ATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAA
715965 CGATACCTATTACA-T-TATAAGCGCTACCTA-TACATATTTTTTACCTATTATATTGAAAGTGT
196 CGATACCTATTACATTATATAAGCGCTACCTATTACATATTTTTTACCTATTATATTGAAAGTGT
716027 CCATACTTTTTATAAAAAGGATCGATACTT-TGTTTAAAGTTATGTAATTTATGTTTCAATTTTT
261 CCATAC-TTTTATAAAAAGGATCGATACTTCT-TTTAAAGTTATGTAATTTATGTTTCAATTTTT
*
716091 TTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTTATTTACACAAAAAATTA
324 TTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTA
716156 TTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
389 TTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
716194 TTTTTAATTTAATAATAATATATATCGTAACGT-AAAAAGAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
716258 AAATTAATATCTTAAAACTCACTCAAAAGAT
66 AAATTAATATCTTAAAACTCACTCAAAAGAT
716289 GTATACCTAA
Statistics
Matches: 921, Mismatches: 11, Indels: 27
0.96 0.01 0.03
Matches are distributed among these distances:
420 31 0.03
421 9 0.01
422 87 0.09
423 319 0.35
424 148 0.16
425 102 0.11
426 74 0.08
427 151 0.16
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (426 bp):
TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAGT
ATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAA
CGATACCTATTACATTATATAAGCGCTACCTATTACATATTTTTTACCTATTATATTGAAAGTGT
CCATACTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTT
AATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATT
TGATTGTTTTGATATTTTATAAAATAATATTTAGAA
Found at i:716319 original size:25 final size:25
Alignment explanation
Indices: 716291--716350 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
716281 CAAAAGATGT
716291 ATACCTAAATATGTAGTTATTGTAC
1 ATACCTAAATATGTAGTTATTGTAC
716316 ATACCTAAATATGTAGTTATTGTAC
1 ATACCTAAATATGTAGTTATTGTAC
716341 ATACCTAAAT
1 ATACCTAAAT
716351 TAATGATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (25 bp):
ATACCTAAATATGTAGTTATTGTAC
Found at i:719340 original size:23 final size:23
Alignment explanation
Indices: 719314--719376 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
719304 ATATAACCAC
719314 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
719337 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
719360 TACCTATTACATCATAT
1 TACCTATTACATTATAT
719377 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:719734 original size:430 final size:431
Alignment explanation
Indices: 718968--720439 Score: 2715
Period size: 430 Copynumber: 3.4 Consensus size: 431
718958 TAATATGTTG
718968 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTC-TTTAAAGTTATGT-ATTTATGTTTCAA
1 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
719031 TTTTTTTT-A-AGTAGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
66 TTTTTTTTAATAGT-GTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
719094 AAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATA
130 AAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATA
719159 TATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTC
195 TATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTC
*
719224 ACTCAAAAGATAACCTTAAATTAAT-ATTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAA
260 ACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAA
719288 GGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATA
325 GGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATA
719353 TAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
390 TAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
* *
719395 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGCTATGTAATTTATGTTTCAA
1 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
719460 TTTTTTTTAAGTA-TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
66 TTTTTTTTAA-TAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
719524 AAAATTATTTGATTGTTTTGATATTTTAT-AAATAATATATTTAGAATTTTTAATTTAATAAT-A
130 AAAATTATTTGATTGTTTTGATATTTTATAAAAT-A-ATATTTAGAATTTTTAATTTAATAATAA
719587 -ATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
193 TATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
719651 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAA
258 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAA
719716 AAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
323 AAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
719781 TATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
388 TATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
719825 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
1 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
719890 TTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAA
66 TTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAA
*
719955 AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTATAATTTTTAATTTAATAATAATAT
131 AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATAT
*
720020 ATATCATAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
196 ATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
*
720085 CTCAAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTAT-AAAAG
261 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAG
720149 GATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACA-TATAT
326 GATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATAT
720213 AAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
391 AAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
720254 AAGTGTCCATACTTTTTAT-AAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTC-A
1 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
*
720317 -TTTTTTTAATAGTGTTTCATGTTTTCCACCTAC-ATATTAATTTAATAATTTCATTTACACAAA
66 TTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAA
* *
720380 AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATTTAACAATA
131 AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
720440 TTAACCAAAT
Statistics
Matches: 1021, Mismatches: 12, Indels: 27
0.96 0.01 0.03
Matches are distributed among these distances:
424 14 0.01
425 72 0.07
426 33 0.03
427 37 0.04
428 55 0.05
429 208 0.20
430 446 0.44
431 155 0.15
432 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (431 bp):
AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA
TTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAA
AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATAT
ATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAG
GATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATAT
AAGCGCTACCTATTACATCATATTTTTACCTATTATATTGA
Found at i:719770 original size:23 final size:23
Alignment explanation
Indices: 719744--719806 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
719734 ATATAACCAC
719744 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
719767 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
719790 TACCTATTACATCATAT
1 TACCTATTACATTATAT
719807 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:720200 original size:23 final size:23
Alignment explanation
Indices: 720174--720235 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
720164 ATATAACCAC
720174 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
720197 TACCTATTACA-TATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
720219 TACCTATTACATCATAT
1 TACCTATTACATTATAT
720236 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.35
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:720613 original size:16 final size:16
Alignment explanation
Indices: 720588--720621 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
720578 ATCTATTACA
*
720588 TTTTTCAATCGACACT
1 TTTTTAAATCGACACT
720604 TTTTTAAATCGACACT
1 TTTTTAAATCGACACT
720620 TT
1 TT
720622 GTTGTGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (16 bp):
TTTTTAAATCGACACT
Found at i:721816 original size:3 final size:3
Alignment explanation
Indices: 721808--721885 Score: 84
Period size: 3 Copynumber: 26.0 Consensus size: 3
721798 ACTTGTTTGG
* * * *
721808 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC GTC ATC TTC ATC GTC AGC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * *
721856 TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
721886 GTCAACTTCA
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:721894 original size:12 final size:12
Alignment explanation
Indices: 721809--721902 Score: 116
Period size: 12 Copynumber: 7.8 Consensus size: 12
721799 CTTGTTTGGA
* *
721809 TCATCATCATCA
1 TCATCGTCATCT
* *
721821 TCATCATCATCA
1 TCATCGTCATCT
721833 TCATCGTCATCT
1 TCATCGTCATCT
*
721845 TCATCGTCAGCT
1 TCATCGTCATCT
*
721857 TCATCGTCATCA
1 TCATCGTCATCT
721869 TCATCGTCATCT
1 TCATCGTCATCT
*
721881 TCATCGTCAACT
1 TCATCGTCATCT
*
721893 TCATCTTCAT
1 TCATCGTCAT
721903 TGATCGCTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 73 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:724161 original size:200 final size:199
Alignment explanation
Indices: 723360--724331 Score: 1714
Period size: 199 Copynumber: 4.9 Consensus size: 199
723350 TTTAAATTAG
* *
723360 TATCGATACAAAAT-AAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
723424 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
* *
723489 CGACACTTTTTATATATGGATCGACACCTTATGGTTGCACACTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
723554 AAAA
196 AAAA
**** * ** *
723558 TATCGACACTTTTTTAAATGGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCAGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
723623 CTTGTACTGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
723688 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
723753 AAAA
196 AAAA
**** * **
723757 TATCGACACTTTTTTAAATGGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
723822 CTTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
723886 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
723951 AAAA
196 AAAA
723955 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
724020 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGG-TTCGATGTTTTTGGGA
724085 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
724150 AAAAA
195 AAAAA
724155 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
724220 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGG-TTCGATGTTTTTGGGA
*
724285 TCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
724332 GGCCATATTG
Statistics
Matches: 748, Mismatches: 23, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
198 199 0.27
199 287 0.38
200 262 0.35
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
AAAA
Found at i:724496 original size:19 final size:19
Alignment explanation
Indices: 724450--724498 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
724440 TTATATTCAC
*
724450 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
724469 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
724488 ATACAAAATTA
1 ATACAAAATTA
724499 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:726414 original size:21 final size:21
Alignment explanation
Indices: 726389--726432 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
726379 CCCCTTATGC
726389 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
726410 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
726431 CT
1 CT
726433 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:728488 original size:24 final size:24
Alignment explanation
Indices: 728451--728503 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
728441 CCGTTCTATC
728451 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
728475 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
728499 TATTT
1 TATTT
728504 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:728665 original size:17 final size:18
Alignment explanation
Indices: 728643--728685 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
728633 ATATATCCGG
728643 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
728660 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
728680 TATCAT
1 TATCAT
728686 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:728703 original size:20 final size:19
Alignment explanation
Indices: 728648--728694 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
728638 TCCGGTATCA
728648 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
728667 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
728688 TTTTACC
1 TTTTACC
728695 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:728919 original size:181 final size:182
Alignment explanation
Indices: 728615--729087 Score: 673
Period size: 181 Copynumber: 2.6 Consensus size: 182
728605 CGTACTTACG
* * * *
728615 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
728680 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
* *
728745 AGGCGCTAAAACTATTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * *
728796 AAAGTATCGACACTTTTAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACTGATTT
1 AAAGTATCGACACTTTAAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
728861 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** * * *
728926 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCTTTATATT
131 AGGAGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * *
728978 AAAGTACCGACACTTTAAATGTA-TCTGGTAGCGCTTTACCGGTTTTATCATTTCT-ATACCGGT
1 AAAGTATCGACACTTTAAATATATTC-GGTAACGTTTTACCGGTTTTATCATTT-TGATACCGGT
* * *
729041 TTTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
64 TTTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
729088 AATTTGGATC
Statistics
Matches: 260, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
181 164 0.63
182 95 0.37
183 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
AAAGTATCGACACTTTAAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:731727 original size:23 final size:23
Alignment explanation
Indices: 731692--731739 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
731682 ATCAAGTACA
*
731692 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
* *
731715 ATAATGTAATAGGTTGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
731738 AT
1 AT
731740 TGGCATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:737092 original size:21 final size:21
Alignment explanation
Indices: 737059--737117 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
737049 ATTTACCGTG
*
737059 ATTGCCGCCGTCGCGGGCGCT
1 ATTGCGGCCGTCGCGGGCGCT
* * *
737080 ATTGCGGCTGTCGCAGACGCT
1 ATTGCGGCCGTCGCGGGCGCT
737101 ATTGCGGCCGTCGCGGG
1 ATTGCGGCCGTCGCGGG
737118 TAACTCGGAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.08, C:0.32, G:0.39, T:0.20
Consensus pattern (21 bp):
ATTGCGGCCGTCGCGGGCGCT
Found at i:739907 original size:2 final size:2
Alignment explanation
Indices: 739900--739932 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
739890 GTAGGAGATC
739900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
739933 GACTTGACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:747195 original size:78 final size:78
Alignment explanation
Indices: 747066--747218 Score: 243
Period size: 78 Copynumber: 2.0 Consensus size: 78
747056 TTTAAAATCA
* *
747066 ACAAGTCATTTATATTTGTTGGGTATCAAGCAATTTTTAAAATTTTAAAATAATATAGATGTTTG
1 ACAAGTCATTTATATTTGTTGGGTATCAAGCAACTTTTAAAATTTTAAAATAATATAGATGTTGG
747131 AACTCGTCACATC
66 AACTCGTCACATC
* * * *
747144 ACAAGTTATTTATATTTTTTGGGTATCAGGCAGCTTTTAAAATTTTAAAATAATATAGATGTTGG
1 ACAAGTCATTTATATTTGTTGGGTATCAAGCAACTTTTAAAATTTTAAAATAATATAGATGTTGG
*
747209 AATTCGTCAC
66 AACTCGTCAC
747219 GTCGATATGA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (78 bp):
ACAAGTCATTTATATTTGTTGGGTATCAAGCAACTTTTAAAATTTTAAAATAATATAGATGTTGG
AACTCGTCACATC
Found at i:747299 original size:37 final size:37
Alignment explanation
Indices: 747249--747377 Score: 129
Period size: 37 Copynumber: 3.4 Consensus size: 37
747239 CCAATTTATT
*
747249 TTTTAAAAATAATTTATTACAAAGTAATAATAAAAT-A
1 TTTTAAAACTAATTTATTACAAA-TAATAATAAAATAA
747286 TTTTAAAACTAATTTATTACAAAATAATAATAATAATAAAAA
1 TTTTAAAACTAATTTATTAC-AAATAATAATAA-AAT---AA
* *
747328 ATTT-AAACTAATTTATTACAAA-AATAATAAAAAAA
1 TTTTAAAACTAATTTATTACAAATAATAATAAAATAA
*
747363 GTTTTTTAAACTAAT
1 --TTTTAAAACTAAT
747378 ACAATAACTA
Statistics
Matches: 79, Mismatches: 4, Indels: 17
0.79 0.04 0.17
Matches are distributed among these distances:
35 2 0.03
37 31 0.39
38 16 0.20
39 8 0.10
40 3 0.04
41 15 0.19
42 4 0.05
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (37 bp):
TTTTAAAACTAATTTATTACAAATAATAATAAAATAA
Found at i:747345 original size:41 final size:44
Alignment explanation
Indices: 747273--747357 Score: 140
Period size: 41 Copynumber: 2.0 Consensus size: 44
747263 TATTACAAAG
*
747273 TAATAATAAAATATTTTAAAACTAATTTATTAC-AAAATAATAA
1 TAATAATAAAATAATTTAAAACTAATTTATTACAAAAATAATAA
747316 TAATAATAAAA-AATTT-AAACTAATTTATTACAAAAATAATAA
1 TAATAATAAAATAATTTAAAACTAATTTATTACAAAAATAATAA
747358 AAAAAGTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
41 15 0.38
42 14 0.35
43 11 0.28
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (44 bp):
TAATAATAAAATAATTTAAAACTAATTTATTACAAAAATAATAA
Found at i:749592 original size:35 final size:36
Alignment explanation
Indices: 749514--749622 Score: 134
Period size: 35 Copynumber: 3.1 Consensus size: 36
749504 ACTAACTACA
* * *
749514 ACTAATGTGCATTCTCTAAATGCGATACATGAGA-T
1 ACTAATGTGCATTATCTAAATGCGACACATGACACT
*
749549 ACTGATGTGCATTATCTAAATGCGACACATGACACT
1 ACTAATGTGCATTATCTAAATGCGACACATGACACT
* * *
749585 -CTAATGTGCACTATTTAAATGTGACAC-TGACACT
1 ACTAATGTGCATTATCTAAATGCGACACATGACACT
749619 ACTA
1 ACTA
749623 TGCAATATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
34 7 0.11
35 56 0.88
36 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (36 bp):
ACTAATGTGCATTATCTAAATGCGACACATGACACT
Found at i:755008 original size:20 final size:20
Alignment explanation
Indices: 754971--755009 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
754961 AAAGCTCATA
* *
754971 TAGGATCATATAGATGCATT
1 TAGGAGCATATACATGCATT
*
754991 TAGGAGCATATACTTGCAT
1 TAGGAGCATATACATGCAT
755010 GTGGTGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATACATGCATT
Found at i:761869 original size:41 final size:41
Alignment explanation
Indices: 761824--761916 Score: 123
Period size: 41 Copynumber: 2.3 Consensus size: 41
761814 AAGTTAAATG
761824 GTGAACTATTAAATATTGTCATGGTTGAATTGAATCGAATA
1 GTGAACTATTAAATATTGTCATGGTTGAATTGAATCGAATA
** * * * *
761865 GTGAACTATTGTATATTTTCATGGTTGAATTGGATCGTATG
1 GTGAACTATTAAATATTGTCATGGTTGAATTGAATCGAATA
*
761906 GCGAACTATTA
1 GTGAACTATTA
761917 TGTATTGACA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (41 bp):
GTGAACTATTAAATATTGTCATGGTTGAATTGAATCGAATA
Found at i:766221 original size:3 final size:3
Alignment explanation
Indices: 766215--766272 Score: 71
Period size: 3 Copynumber: 18.3 Consensus size: 3
766205 ATAAAAAAAT
* *
766215 TAA TAA TAA TAA TATA TAA TAA TAT TAT TAGA TAAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A T-AA TAA TAA TAA TAA
766263 TAA TAA TAA T
1 TAA TAA TAA T
766273 TTATAAACCC
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
3 43 0.86
4 6 0.12
5 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:770028 original size:16 final size:17
Alignment explanation
Indices: 770003--770038 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
769993 CTGATGTGTC
770003 ACATTGACTTTT-CAAA
1 ACATTGACTTTTACAAA
*
770019 ACATTTACTTTTACAAA
1 ACATTGACTTTTACAAA
770036 ACA
1 ACA
770039 ACTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (17 bp):
ACATTGACTTTTACAAA
Found at i:771938 original size:17 final size:17
Alignment explanation
Indices: 771916--771952 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
771906 GACGACTCAT
771916 ACGTTCTTGGTTTACTA
1 ACGTTCTTGGTTTACTA
771933 ACGTTCTTGGTTTACTA
1 ACGTTCTTGGTTTACTA
771950 ACG
1 ACG
771953 ATCCCAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (17 bp):
ACGTTCTTGGTTTACTA
Found at i:780721 original size:18 final size:18
Alignment explanation
Indices: 780688--780723 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
780678 ACCCTACCTG
*
780688 GCCTAATGACCCAATTTT
1 GCCTAATGACCAAATTTT
*
780706 GCCTAATGAGCAAATTTT
1 GCCTAATGACCAAATTTT
780724 ACCGAACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (18 bp):
GCCTAATGACCAAATTTT
Found at i:781033 original size:2 final size:2
Alignment explanation
Indices: 781026--781077 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
781016 TCTAACCATA
781026 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
781068 AT AT AT AT AT
1 AT AT AT AT AT
781078 TTCATAATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:781626 original size:158 final size:156
Alignment explanation
Indices: 781326--781692 Score: 454
Period size: 158 Copynumber: 2.3 Consensus size: 156
781316 TAATTAACGT
* * * *
781326 TACATAGGTATTCTATTGTGGTATATGAGCATGTGGTTCAAATTT-AGT--AAAAATGACTTAAA
1 TACATAGGTATTCTACTATGGTTTA-GAGCATGTGGTTCAAATTTGA-TAAAAAAAAGACTTAAA
* * * * *
781388 ATAAATCACAAATTAAAGGAATAAGAAATTATGAAAAATTGAAGGACTAAATTGAAAAATGAAAA
64 ATAAATCACAAATTAAAGAAAGAAGAAATTATGAAAAATTAAAAGACTAAATTGAAAAATAAAAA
* ** *
781453 CATTGTTATCAAAAAGAGGAATTGAA-AG
129 AATTAATAACAAAAAGAGGAATT-AAGAG
* **
781481 TACATATGTATTCTACTATGGTTTAGGAGCATGTGACTCAAATTTGATAAAAAAAAGACTTAAAA
1 TACATAGGTATTCTACTATGGTTTA-GAGCATGTGGTTCAAATTTGATAAAAAAAAGACTTAAAA
* ** * *
781546 TAAATGATTAATTGAAGAAAGAAGAAGATTGTGAAAAATTAAAAGACTAAATTGAAAAATAAAAA
65 TAAATCACAAATTAAAGAAAGAAGAA-ATTATGAAAAATTAAAAGACTAAATTGAAAAATAAAAA
781611 AATTAATAACAAAAAGAGGAATTAAGAG
129 AATTAATAACAAAAAGAGGAATTAAGAG
* *
781639 TACATAGGTATTCTTCTATGGTTTAGAGCATGTGGTTTAAATTTGATAAAAAAA
1 TACATAGGTATTCTACTATGGTTTAGAGCATGTGGTTCAAATTTGATAAAAAAA
781693 GATAAGACTT
Statistics
Matches: 180, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
155 39 0.22
156 1 0.01
157 62 0.34
158 78 0.43
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (156 bp):
TACATAGGTATTCTACTATGGTTTAGAGCATGTGGTTCAAATTTGATAAAAAAAAGACTTAAAAT
AAATCACAAATTAAAGAAAGAAGAAATTATGAAAAATTAAAAGACTAAATTGAAAAATAAAAAAA
TTAATAACAAAAAGAGGAATTAAGAG
Found at i:783522 original size:2 final size:2
Alignment explanation
Indices: 783515--783546 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
783505 TTAAGCCGCT
783515 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
783547 AACCTCTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:784378 original size:16 final size:16
Alignment explanation
Indices: 784357--784432 Score: 98
Period size: 16 Copynumber: 4.8 Consensus size: 16
784347 GACCTATTTC
* *
784357 AACCTGACCTGTTATG
1 AACCTGACCTGTTTTT
*
784373 AACCTGACATGTTTTT
1 AACCTGACCTGTTTTT
* *
784389 AACTTGACATGTTTTT
1 AACCTGACCTGTTTTT
*
784405 AATCTGACCTGTTTTT
1 AACCTGACCTGTTTTT
784421 AACCTGACCTGT
1 AACCTGACCTGT
784433 AAATGATCTG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (16 bp):
AACCTGACCTGTTTTT
Found at i:784442 original size:32 final size:31
Alignment explanation
Indices: 784357--784449 Score: 87
Period size: 32 Copynumber: 2.9 Consensus size: 31
784347 GACCTATTTC
*
784357 AACCTGACCTGTTATGAACCTGACATGTTTTT
1 AACCTGACCTGTTATG-ATCTGACATGTTTTT
* * * * *
784389 AACTTGACATGTTTTTAATCTGACCTGTTTTT
1 AACCTGACCTG-TTATGATCTGACATGTTTTT
* *
784421 AACCTGACCTGTAAATGATCTGACTTGTT
1 AACCTGACCTGT-TATGATCTGACATGTT
784450 AATGATCTGA
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
31 1 0.02
32 43 0.91
33 3 0.06
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (31 bp):
AACCTGACCTGTTATGATCTGACATGTTTTT
Found at i:784443 original size:16 final size:16
Alignment explanation
Indices: 784424--784459 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
784414 TGTTTTTAAC
784424 CTGACCTGTAAATGAT
1 CTGACCTGTAAATGAT
* *
784440 CTGACTTGTTAATGAT
1 CTGACCTGTAAATGAT
784456 CTGA
1 CTGA
784460 TCTGATACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (16 bp):
CTGACCTGTAAATGAT
Found at i:784608 original size:29 final size:29
Alignment explanation
Indices: 784575--784642 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
784565 TTAAATGTTA
** *
784575 TAATAAAATATTTATTAT-TATAATTATAT
1 TAATAAAATACCTATTATATAAAATTAT-T
*
784604 TAATAAATAGACCTATTATATAAAATTATT
1 TAATAAA-ATACCTATTATATAAAATTATT
784634 TAATAAAAT
1 TAATAAAAT
784643 TAATAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 8 0.25
30 16 0.50
31 8 0.25
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (29 bp):
TAATAAAATACCTATTATATAAAATTATT
Found at i:784691 original size:28 final size:24
Alignment explanation
Indices: 784618--784693 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 24
784608 AAATAGACCT
* *
784618 ATTATATAAAATTATT-TAAT-AAA
1 ATTA-ATAAAATTATTAAAATGTAA
*
784641 ATTAATAAAATTATTTAAATGTAA
1 ATTAATAAAATTATTAAAATGTAA
784665 ATTAGATAAAACATTATTAATAATGTAA
1 ATTA-AT-AAA-ATTATTAA-AATGTAA
784693 A
1 A
784694 GGAAAATTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 11 0.25
23 7 0.16
24 6 0.14
25 2 0.05
26 3 0.07
27 7 0.16
28 8 0.18
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (24 bp):
ATTAATAAAATTATTAAAATGTAA
Found at i:784720 original size:14 final size:14
Alignment explanation
Indices: 784698--784744 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
784688 TGTAAAGGAA
*
784698 AATTAATATAGTTT
1 AATTTATATAGTTT
784712 AATTTATATA----
1 AATTTATATAGTTT
784722 AA-TTATATAGTTT
1 AATTTATATAGTTT
784735 AATTTATATA
1 AATTTATATA
784745 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:784731 original size:23 final size:24
Alignment explanation
Indices: 784697--784746 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
784687 ATGTAAAGGA
784697 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
784721 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
784744 AAA
1 AAA
784747 GAAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:787405 original size:101 final size:100
Alignment explanation
Indices: 787225--787425 Score: 303
Period size: 101 Copynumber: 2.0 Consensus size: 100
787215 TGGTAGATTG
* *
787225 GGTTGTTTGGAGAAAGAGAAACAATTAATAGCAGAAGAAAAAAAAAATATGAGGGAAATGACAAT
1 GGTTGTTTGGAGAAAGAGAAACAATTAAGAGCAGAAGAAAAAAAAAATAGGAGGGAAATGACAAT
* *
787290 TATGGTTTGATTATTTGGCGTCATCGTCTTATATA
66 TATGGTTTGATTATTTGGCGTCACCGCCTTATATA
* * *
787325 GGTTGTTTGGAGAGAGGGAAATAATTAAGAGCAGAAGAAAAATAAAAATAGGAGGGAAATGACAA
1 GGTTGTTTGGAGAAAGAGAAACAATTAAGAGCAGAAGAAAAA-AAAAATAGGAGGGAAATGACAA
* * *
787390 TTCTTGTTTGGTTATTTGGCGTCACCGCCTTATATA
65 TTATGGTTTGATTATTTGGCGTCACCGCCTTATATA
787426 ATTTATATTA
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 38 0.42
101 52 0.58
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (100 bp):
GGTTGTTTGGAGAAAGAGAAACAATTAAGAGCAGAAGAAAAAAAAAATAGGAGGGAAATGACAAT
TATGGTTTGATTATTTGGCGTCACCGCCTTATATA
Found at i:787475 original size:16 final size:16
Alignment explanation
Indices: 787447--787507 Score: 71
Period size: 16 Copynumber: 4.1 Consensus size: 16
787437 TAGAGTATTT
787447 ATAATTA-ATATTATA
1 ATAATTATATATTATA
787462 ATAATTATATATTATA
1 ATAATTATATATTATA
787478 ATTAA-TATA-A--A-A
1 A-TAATTATATATTATA
787490 ATAATTATATATTATA
1 ATAATTATATATTATA
787506 AT
1 AT
787508 TAATATTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
11 3 0.08
12 6 0.15
13 2 0.05
15 9 0.23
16 16 0.41
17 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTATATATTATA
Found at i:787477 original size:28 final size:27
Alignment explanation
Indices: 787445--787543 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 27
787435 AATAGAGTAT
787445 TTATAATTAATATTATAATAATTATATA
1 TTATAATTAATATTA-AATAATTATATA
*
787473 TTATAATTAATATAAAAATAATTATATA
1 TTATAATTAATAT-TAAATAATTATATA
*
787501 TTATAATTAATATTAATTTAATTA-ATA
1 TTATAATTAATATTAA-ATAATTATATA
787528 TTA-ATATTAATATTAA
1 TTATA-ATTAATATTAA
787544 CTTATATTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
26 1 0.02
27 19 0.29
28 44 0.68
29 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
TTATAATTAATATTAAATAATTATATA
Found at i:787515 original size:6 final size:6
Alignment explanation
Indices: 787493--787556 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
787483 TATAAAAATA
787493 ATTATAT ATT-AT AATTAAT ATTAAT -TT-A- ATTAAT ATTAAT ATTAAT
1 ATTA-AT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT
*
787539 ATTAA- CTT-AT ATTAAT AT
1 ATTAAT ATTAAT ATTAAT AT
787557 AGTTTATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
4 4 0.08
5 9 0.19
6 30 0.62
7 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTAAT
Found at i:787550 original size:22 final size:20
Alignment explanation
Indices: 787500--787556 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 20
787490 ATAATTATAT
787500 ATTATAATTAATATTAATTTA
1 ATTAT-ATTAATATTAATTTA
787521 ATTAATATTAATATTAATATTA
1 ATT-ATATTAATATTAAT-TTA
787543 ACTTATATTAATAT
1 A-TTATATTAATAT
787557 AGTTTATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
21 15 0.45
22 16 0.48
23 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTATATTAATATTAATTTA
Found at i:787609 original size:31 final size:31
Alignment explanation
Indices: 787571--787632 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
787561 TATAATTTGT
787571 AATTAATATTAATATAAAATATA-GTCTATAA
1 AATTAATATTAATATAAAATATATGT-TATAA
*
787602 AATTAATATTAATATAAACTATATGTTATAA
1 AATTAATATTAATATAAAATATATGTTATAA
787633 GTTATATAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (31 bp):
AATTAATATTAATATAAAATATATGTTATAA
Found at i:787623 original size:24 final size:25
Alignment explanation
Indices: 787578--787624 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
787568 TGTAATTAAT
**
787578 ATTAATATAAAATATAGTCTATAAA
1 ATTAATATAAAATATAAACTATAAA
*
787603 ATTAATAT-TAATATAAACTATA
1 ATTAATATAAAATATAAACTATA
787625 TGTTATAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATATAAAATATAAACTATAAA
Found at i:787724 original size:15 final size:15
Alignment explanation
Indices: 787706--787770 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
787696 AACTATATAC
787706 TATATTAATATAAAT
1 TATATTAATATAAAT
*
787721 TATAGTTAAGAT-AAT
1 TATA-TTAATATAAAT
* *
787736 TAACATTAATATAAAC
1 T-ATATTAATATAAAT
787752 TATAGTT--TATAAAT
1 TATA-TTAATATAAAT
787766 TATAT
1 TATAT
787771 ACTATAGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.25
15 16 0.40
16 13 0.32
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (15 bp):
TATATTAATATAAAT
Found at i:787774 original size:21 final size:21
Alignment explanation
Indices: 787614--787797 Score: 76
Period size: 21 Copynumber: 8.5 Consensus size: 21
787604 TTAATATTAA
* *
787614 TATAAACTATA-TGTTATAAGT
1 TATATACTATAGT-TTATAAAT
* *
787635 TATATAGTATAGTTTATAAAC
1 TATATACTATAGTTTATAAAT
* * *
787656 TATAGTTAATATA-ATTA-ACAT
1 TATA--TACTATAGTTTATAAAT
* * *
787677 TAATATAGTGTAGTTTATAAAC
1 T-ATATACTATAGTTTATAAAT
787699 TATATACTATA-TTAATATAAAT
1 TATATACTATAGTT--TATAAAT
* *
787721 TATAGT--TA-AGATAATTAACAT
1 TATA-TACTATAGTTTA-TAA-AT
787742 TAATATAAACTATAGTTTATAAAT
1 T-ATAT--ACTATAGTTTATAAAT
* *
787766 TATATACTATAGGTTATAAAG
1 TATATACTATAGTTTATAAAT
*
787787 TATAAACTATA
1 TATATACTATA
787798 TAGTACACTA
Statistics
Matches: 122, Mismatches: 23, Indels: 36
0.67 0.13 0.20
Matches are distributed among these distances:
19 1 0.01
20 11 0.09
21 64 0.52
22 23 0.19
23 11 0.09
24 3 0.02
25 5 0.04
26 4 0.03
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (21 bp):
TATATACTATAGTTTATAAAT
Found at i:787824 original size:131 final size:129
Alignment explanation
Indices: 787576--787833 Score: 301
Period size: 131 Copynumber: 2.0 Consensus size: 129
787566 TTTGTAATTA
* *
787576 ATATTAATATAAAATATAGTCTATAAAATTAATATTAATATAAACTATATGTTATAAGTTATATA
1 ATATTAATATAAAATATAGTCTATAAAATTAACATTAATATAAACTATATGTTATAAATTATATA
* * * * * *
787641 GTATAGTTTATAAACTATAGTTAATATAATTAACATTAATATAGTGTAGTTTATAAACTATATAC
66 CTATAGGTTATAAACTATA--TAATATAAGTAACACTAATATACTATAGTTTATAAACTATATAC
787706 T
129 T
*
787707 ATATTAATATAAATTATAGT-TA-AGATAATTAACATTAATATAAACTATA-GTTTATAAATTAT
1 ATATTAATATAAAATATAGTCTATA-A-AATTAACATTAATATAAACTATATG-TTATAAATTAT
* *
787769 ATACTATAGGTTATAAAGTATA-AACTATATAGT-ACACTAATATAAACTATTGTTTATAAACTA
63 ATACTATAGGTTATAAACTATATAA-TATA-AGTAACACTAATAT--ACTATAGTTTATAAACTA
787832 TA
124 TA
787834 AGTTACATAT
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
128 2 0.02
129 14 0.13
130 6 0.06
131 87 0.80
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (129 bp):
ATATTAATATAAAATATAGTCTATAAAATTAACATTAATATAAACTATATGTTATAAATTATATA
CTATAGGTTATAAACTATATAATATAAGTAACACTAATATACTATAGTTTATAAACTATATACT
Found at i:787891 original size:24 final size:21
Alignment explanation
Indices: 787840--787901 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
787830 TATAAGTTAC
787840 ATATATAGTTTATATA-ACAT
1 ATATATAGTTTATATATACAT
*
787860 ATAAATAGATTGTATATATACAT
1 ATATATAG-TT-TATATATACAT
*
787883 ATACTATAGGTTATATATA
1 ATA-TATAGTTTATATATA
787902 TATAGTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 7 0.20
21 2 0.06
22 14 0.40
23 8 0.23
24 4 0.11
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (21 bp):
ATATATAGTTTATATATACAT
Found at i:787901 original size:57 final size:55
Alignment explanation
Indices: 787828--787965 Score: 170
Period size: 59 Copynumber: 2.4 Consensus size: 55
787818 TTGTTTATAA
*
787828 ACTATAAGTTACATATATAGTTTATATA-ACATATAAATAGATTGTATATATACATAT
1 ACTATAAGTTACATATATAGTTTATATATA-ATATAAATAG-TT-TATACATACATAT
* * * * *
787885 ACTATAGGTTATATATATATAGTTTATATATAGTATACATAGTTTATACATACATGT
1 ACTATAAG-T-TACATATATAGTTTATATATAATATAAATAGTTTATACATACATAT
787942 ACTATAAGTTACATATATAGTTTA
1 ACTATAAGTTACATATATAGTTTA
787966 CATGTATACA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
55 14 0.20
56 1 0.01
57 25 0.36
58 3 0.04
59 26 0.37
60 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (55 bp):
ACTATAAGTTACATATATAGTTTATATATAATATAAATAGTTTATACATACATAT
Found at i:787902 original size:24 final size:22
Alignment explanation
Indices: 787840--787903 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
787830 TATAAGTTAC
787840 ATATATA-GTTTATATA-ACAT
1 ATATATAGGTTTATATATACAT
* *
787860 ATAAATAGATTGTATATATACAT
1 ATATATAGGTT-TATATATACAT
787883 ATACTATAGGTTATATATATA
1 ATA-TATAGGTT-TATATATA
787904 TAGTTTATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.17
21 2 0.06
22 6 0.17
23 7 0.20
24 14 0.40
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (22 bp):
ATATATAGGTTTATATATACAT
Found at i:787905 original size:15 final size:16
Alignment explanation
Indices: 787881--787921 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
787871 GTATATATAC
787881 ATATACTATAGGTTAT
1 ATATACTATAGGTTAT
*
787897 ATATA-TATAGTTTAT
1 ATATACTATAGGTTAT
*
787912 ATATAGTATA
1 ATATACTATA
787922 CATAGTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (16 bp):
ATATACTATAGGTTAT
Found at i:787911 original size:59 final size:57
Alignment explanation
Indices: 787828--787960 Score: 164
Period size: 57 Copynumber: 2.3 Consensus size: 57
787818 TTGTTTATAA
*
787828 ACTATAAGTTAC--ATATATAGTTTATATA-ACATATAAATAGATTGTATATATACATAT
1 ACTATAAGTTACATATATATAGTTTATATATA-ATATAAATAG-TT-TATACATACATAT
* * * * *
787885 ACTATAGGTTATATATATATAGTTTATATATAGTATACATAGTTTATACATACATGT
1 ACTATAAGTTACATATATATAGTTTATATATAATATAAATAGTTTATACATACATAT
787942 ACTATAAGTTACATATATA
1 ACTATAAGTTACATATATA
787961 GTTTACATGT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 38 0.58
58 2 0.03
59 24 0.37
60 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (57 bp):
ACTATAAGTTACATATATATAGTTTATATATAATATAAATAGTTTATACATACATAT
Found at i:787921 original size:20 final size:19
Alignment explanation
Indices: 787894--787932 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
787884 TACTATAGGT
*
787894 TATATATATATAGTTTATA
1 TATATATACATAGTTTATA
787913 TATAGTATACATAGTTTATA
1 TATA-TATACATAGTTTATA
787933 CATACATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (19 bp):
TATATATACATAGTTTATA
Found at i:788048 original size:21 final size:21
Alignment explanation
Indices: 788019--788071 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
788009 ATGCATAATG
788019 TTTAGGGTTTAGGGTTTT-TGA
1 TTTAGGGTTTA-GGTTTTATGA
*
788040 TTTATGGTTTAGGTTTTATGA
1 TTTAGGGTTTAGGTTTTATGA
788061 TTTAGGGTTTA
1 TTTAGGGTTTA
788072 TATTTTAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 6 0.21
21 23 0.79
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (21 bp):
TTTAGGGTTTAGGTTTTATGA
Done.