Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002127.1 Hibiscus syriacus cultivar Beakdansim tig00004356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55843

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2863--2928
29
2.3
29
79
7
73
56
1
9
33
1.40
4022--4068
14
3.5
13
88
11
69
65
2
0
31
1.04
4011--4068
26
2.2
26
87
6
82
62
1
0
36
1.06
4217--4860
134
4.8
136
87
5
878
25
15
24
34
1.95
4217--4860
270
2.4
270
86
3
915
25
15
24
34
1.95
4683--4779
40
2.3
42
81
11
112
18
16
28
36
1.93
14221--14497
119
2.3
122
88
3
402
40
19
9
30
1.83
15459--15509
22
2.3
22
83
6
68
54
1
11
31
1.47
16160--16262
22
4.7
22
95
0
170
21
14
46
17
1.83
16281--16319
16
2.4
16
91
0
60
20
20
33
25
1.97
23026--23180
81
1.9
81
95
0
283
45
9
10
34
1.70
26959--27003
21
2.1
21
95
0
81
40
24
22
13
1.90
28932--29035
42
2.4
42
76
17
108
73
3
2
20
1.13
28940--29000
30
1.9
33
83
9
83
73
3
1
21
1.06
29545--29606
26
2.4
28
76
15
69
64
1
0
33
1.03
29962--30020
29
2.0
30
83
9
77
61
3
6
28
1.38
31359--31416
3
18.7
3
78
7
62
70
0
1
27
0.97
31382--31423
6
6.8
6
89
5
57
76
0
2
21
0.90
31620--32051
215
2.0
215
98
0
837
38
14
19
27
1.90
34223--34306
39
2.2
39
80
0
96
21
20
20
38
1.94
35423--35489
24
2.8
24
86
8
84
8
19
16
55
1.67
50072--50117
22
2.2
22
84
7
60
45
0
4
50
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52732--52765
12
2.7
13
90
9
61
38
5
8
47
1.59
54524--54557
13
2.6
13
90
0
50
44
5
11
38
1.65

Tables:   1

The End!