Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002128.1 Hibiscus syriacus cultivar Beakdansim tig00004357_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100793

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
890--925
15
2.4
15
90
0
54
22
33
5
38
1.77
1210--1249
21
1.9
21
84
0
53
17
15
30
37
1.90
8006--8066
16
3.8
16
95
0
113
36
11
19
32
1.88
8618--8665
21
2.2
21
89
10
71
20
0
27
52
1.47
9067--9147
3
27.3
3
97
2
155
33
0
0
66
0.92
13916--13950
4
8.8
4
100
0
70
22
0
0
77
0.78
18924--18980
23
2.5
23
94
0
96
17
21
10
50
1.75
18908--18983
23
3.4
23
82
5
86
15
18
15
50
1.79
19468--19523
30
1.9
30
85
3
78
48
7
16
28
1.72
20732--20770
20
2.0
21
85
10
55
28
0
30
41
1.57
22521--22583
19
3.4
19
86
6
76
42
7
17
31
1.78
22534--22583
19
2.7
18
90
6
82
46
6
16
32
1.71
22621--22696
25
2.9
25
84
11
82
52
1
23
22
1.54
22621--22698
13
5.9
13
77
7
77
51
1
24
23
1.56
24768--24799
14
2.4
14
90
10
50
50
0
0
50
1.00
25957--26007
25
2.1
23
82
13
59
37
3
0
58
1.16
26387--26755
182
2.0
184
91
2
600
46
8
4
40
1.53
27108--27159
25
2.1
25
82
7
61
51
1
1
44
1.23
37180--37231
21
2.5
21
93
0
86
38
13
11
36
1.81
38258--38286
2
14.5
2
100
0
58
0
48
0
51
1.00
38286--38316
2
15.5
2
100
0
62
48
0
0
51
1.00
40875--40919
23
2.0
23
90
0
72
22
6
11
60
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43268--43295
2
14.0
2
100
0
56
50
0
0
50
1.00
55261--55298
2
19.0
2
100
0
76
50
0
50
0
1.00
57949--57996
21
2.3
21
88
0
69
22
50
8
18
1.74
57957--58000
21
2.1
21
95
0
79
20
50
11
18
1.77
60916--60988
32
2.2
32
82
7
83
42
6
5
45
1.54
62406--62433
3
9.3
3
100
0
56
32
0
0
67
0.91
64875--64922
21
2.3
21
88
0
69
22
50
8
18
1.74
64883--64926
21
2.1
21
95
0
79
20
50
11
18
1.77
71279--71315
19
1.9
19
100
0
74
32
5
24
37
1.78
75551--75580
7
4.3
7
100
0
60
26
43
0
30
1.55
86594--86631
19
2.0
20
85
15
53
68
2
7
21
1.28
86680--86716
6
6.2
6
96
0
65
35
0
64
0
0.94
86680--86722
18
2.3
18
88
4
68
37
0
62
0
0.95
92307--92388
39
2.1
39
86
0
110
41
14
30
13
1.84
92932--92957
6
4.3
6
100
0
52
34
15
50
0
1.45
92905--92968
30
2.1
30
88
0
92
42
14
40
3
1.61
92911--92980
30
2.3
30
85
0
86
41
14
40
4
1.65
92942--93021
42
1.9
42
81
0
97
43
16
35
5
1.69
92960--93051
42
2.2
42
82
0
103
44
15
34
5
1.69
93106--93151
24
1.9
24
86
0
65
36
10
43
8
1.71
99722--99780
31
1.9
31
86
6
84
33
18
25
22
1.96

Tables:   1

The End!