Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002129.1 Hibiscus syriacus cultivar Beakdansim tig00004358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61977

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2065--2089
8
3.1
8
100
0
50
12
0
0
88
0.53
7111--7189
31
2.5
31
87
0
113
34
12
16
36
1.87
15071--15134
21
3.0
21
90
0
101
39
3
0
57
1.14
19848--19966
62
1.9
62
94
0
211
28
17
14
39
1.89
20150--20181
15
2.1
15
100
0
64
65
0
0
34
0.93
21343--21397
26
2.2
25
83
3
65
63
0
7
29
1.21
22048--22078
2
15.5
2
100
0
62
48
0
0
51
1.00
22198--22227
15
2.0
15
93
0
51
16
26
30
26
1.97
23536--23586
22
2.3
22
93
0
84
27
19
37
15
1.92
23603--23646
23
1.9
23
100
0
88
9
25
40
25
1.84
23604--23653
23
2.2
23
92
0
82
12
24
40
24
1.88
24089--24129
21
1.9
22
85
5
57
34
9
19
36
1.85
25485--25528
21
2.1
21
86
0
61
25
4
13
56
1.56
26525--27376
182
4.7
182
86
0
1042
44
13
14
27
1.82
27217--27539
164
2.0
164
85
1
434
45
13
13
28
1.80
27231--27569
163
2.1
163
81
4
396
46
12
13
28
1.79
27378--27773
182
2.2
182
90
1
634
44
12
14
28
1.82
28547--28586
21
1.9
21
100
0
80
10
30
35
25
1.88
29227--29302
15
5.1
15
100
0
152
13
26
34
26
1.93
30476--30520
19
2.4
19
92
3
74
42
0
20
37
1.52
30766--30804
18
2.2
18
86
9
53
46
5
7
41
1.55
31768--31823
24
2.5
22
77
13
60
41
1
7
50
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33989--34037
19
2.6
19
90
3
73
30
2
10
57
1.43
34980--35686
198
3.5
195
80
7
692
40
14
14
30
1.86
50443--50506
29
2.2
30
83
8
78
26
7
9
56
1.58
56318--56347
15
2.1
14
93
6
51
80
3
0
16
0.85
56891--57058
40
4.1
41
76
9
148
16
19
24
39
1.91
56899--56996
22
4.7
21
87
5
128
18
19
27
34
1.95
57008--57058
19
2.6
20
84
3
59
11
19
25
43
1.85
57988--58088
23
4.4
22
74
20
91
40
0
2
55
1.22
57988--58080
24
4.0
23
74
21
79
40
1
2
55
1.19
57995--58080
23
3.8
22
77
11
93
40
1
2
55
1.20
58174--58212
19
2.1
19
85
4
53
58
0
2
38
1.12
58088--58232
57
2.6
57
76
13
149
55
1
5
37
1.32
58187--58224
19
2.0
20
85
15
53
57
0
2
39
1.12
58177--58286
25
4.2
25
74
5
69
56
0
2
40
1.20
58223--58261
20
2.0
20
94
0
69
53
0
0
46
1.00
59096--59127
15
2.1
15
94
0
55
34
0
40
25
1.56
59410--59438
14
2.0
15
93
6
51
55
0
0
44
0.99

Tables:   1

The End!