Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000213.1 Hibiscus syriacus cultivar Beakdansim tig00000376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 150623
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Found at i:1061 original size:21 final size:21
Alignment explanation
Indices: 1037--1084 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1027 GGCTAATTGG
*
1037 GCCCAAGACCAACCCAATTAA
1 GCCCAAGACCAACACAATTAA
1058 GCCCAAGACCAACACAATTAA
1 GCCCAAGACCAACACAATTAA
1079 GCCCAA
1 GCCCAA
1085 CAACTTGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.44, C:0.38, G:0.10, T:0.08
Consensus pattern (21 bp):
GCCCAAGACCAACACAATTAA
Found at i:2781 original size:225 final size:223
Alignment explanation
Indices: 2388--3251 Score: 710
Period size: 225 Copynumber: 3.9 Consensus size: 223
2378 GAATTCTCCG
* * * * * ** * * *
2388 TCGTGAAGTTAAGAGTTGGTCTGAGAACATCAACTAAAAACTAGCTCATCGC--TAAGTTAAGCT
1 TCGTGAAGTTGAGACTTGGCCTGAAAACTTTGACTAGAAACTAGCTCATCACTGTTAGTTAAGCT
* * * * * *
2451 AGACT-ACAATCGATTTGGATTGGTTTTTGAACCCAATATCC-TCCGTCGTGGAGTTGATATCGA
66 AGATTGA-AGTCGATTTGGATTGGTTTTCGAACCCAATATCCTTCTGTCGTGGAGTTGAGATTGA
* * * * * * ** * * *
2514 CTTCAATGAGATTTGATTGGAAAATTGTTCCTCGGAGCTGAGTTAAACCAAAATGCAGTAGGTTC
130 CTTCAAAGAGATTTGACTAGAAGATGGCTCCTCGCCGCTGAGTTAAGCCAAAATACAGTCGGTTC
* *
2579 TAGATGCGTCTCCTGGTCAAGAATCATCTT
195 TAGATGAGT-TCCTGGTCAAGAATCTTCTT
* * *
2609 TCGTGAAGTTGAAACTTGGCATGAAAACTTTGACTGGAAACTAGCTCATCACTGTTGAGTTAAGC
1 TCGTGAAGTTGAGACTTGGCCTGAAAACTTTGACTAGAAACTAGCTCATCACTGTT-AGTTAAGC
* ** *
2674 TAGATTGAAG-CTGATTCTGGATTGGTTTTCGAACCTAATATCCTTC-ACCGTAGAGTTGAGATT
65 TAGATTGAAGTC-GATT-TGGATTGGTTTTCGAACCCAATATCCTTCTGTCGTGGAGTTGAGATT
* * * * * *
2737 GACTTTAAAGAGATTTAACTGGAAGATGGCTCCTCGTCGCTGAGTTAATCCAAAATATAGTCGGT
128 GACTTCAAAGAGATTTGACTAGAAGATGGCTCCTCGCCGCTGAGTTAAGCCAAAATACAGTCGGT
* * * *
2802 TCTAGATAAGTTTCCGGGTCAATAATCCTTCGT
193 TCTAGATGAG-TTCCTGGTCAAGAAT-CTTCTT
* * * * * * * * *
2835 T-GTAAAATTGAGACTTGGCCTGAAAAC-TTGATTAGAAACTAGCTCCTTGTAAT-TAATTTAAA
1 TCGTGAAGTTGAGACTTGGCCTGAAAACTTTGACTAGAAACTAGCT-CAT-CACTGTTAGTTAAG
* * * ** * *
2897 CTAGATTGCAGTCGATTTTGGATTGGTTTTTGGACTTAATAT-CATCTGTCGTGGAGTTGAAATT
64 CTAGATTGAAGTCGA-TTTGGATTGGTTTTCGAACCCAATATCCTTCTGTCGTGGAGTTGAGATT
* * * * * *
2961 GACTTCAAAGATATTTGACTAGAAGATAGCTCATCACCGATGAGTTAAGCCAAAATACAGTCGAT
128 GACTTCAAAGAGATTTGACTAGAAGATGGCTCCTCGCCGCTGAGTTAAGCCAAAATACAGTCGGT
* * * * *
3026 TCTGGATGTGTTTCTGGGTCAAGAATTTTTTT
193 TCTAGATGAGTTCCT-GGTCAAGAATCTTCTT
* * * * * *
3058 TCATGAAGTTGAGATTTGGCCTGAAAACTTCGACTATAAACTAGCTTATCACCGCTTAGTTAAGC
1 TCGTGAAGTTGAGACTTGGCCTGAAAACTTTGACTAGAAACTAGCTCATCACTG-TTAGTTAAGC
* * * * *
3123 TAGACT-ATATTCGATTGTGGATTAGTTTTCAAACCCAATATCC-TCTGTCATGGAGTTGAGATT
65 TAGATTGA-AGTCGATT-TGGATTGGTTTTCGAACCCAATATCCTTCTGTCGTGGAGTTGAGATT
* * * *
3186 GACTTCGAAA-AGATTTGTCTAGAAGATGGCTCCTCGCCGTTGAGTTATGCCAAAATGCAGTCGG
128 GACTTC-AAAGAGATTTGACTAGAAGATGGCTCCTCGCCGCTGAGTTAAGCCAAAATACAGTCGG
3250 TT
192 TT
3252 TCGAATCTTT
Statistics
Matches: 502, Mismatches: 118, Indels: 42
0.76 0.18 0.06
Matches are distributed among these distances:
221 40 0.08
223 13 0.03
224 178 0.35
225 257 0.51
226 14 0.03
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (223 bp):
TCGTGAAGTTGAGACTTGGCCTGAAAACTTTGACTAGAAACTAGCTCATCACTGTTAGTTAAGCT
AGATTGAAGTCGATTTGGATTGGTTTTCGAACCCAATATCCTTCTGTCGTGGAGTTGAGATTGAC
TTCAAAGAGATTTGACTAGAAGATGGCTCCTCGCCGCTGAGTTAAGCCAAAATACAGTCGGTTCT
AGATGAGTTCCTGGTCAAGAATCTTCTT
Found at i:4342 original size:43 final size:41
Alignment explanation
Indices: 4271--4395 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 41
4261 ATCTTGAACC
* * * * *
4271 TTTTTCCTAGAGTGCCCTTTGTGGGTTTTCACTATAAGTTT
1 TTTTTCTTAGAGCGCCCTTTATGAGTTTTCACTCTAAGTTT
* *
4312 TTTTTGGCTTAGGGCGCCCTTTTTGAGTTTTCACTCTAA--TT
1 TTTTT--CTTAGAGCGCCCTTTATGAGTTTTCACTCTAAGTTT
*
4353 TTTTTCTTAGAGCGCCCTTTACGAG-TTTCACTCTAAGTTT
1 TTTTTCTTAGAGCGCCCTTTATGAGTTTTCACTCTAAGTTT
4393 TTT
1 TTT
4396 AACTTTAGGC
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
38 11 0.15
39 17 0.24
40 5 0.07
41 12 0.17
43 26 0.37
ACGTcount: A:0.14, C:0.19, G:0.18, T:0.49
Consensus pattern (41 bp):
TTTTTCTTAGAGCGCCCTTTATGAGTTTTCACTCTAAGTTT
Found at i:6002 original size:15 final size:15
Alignment explanation
Indices: 5947--6002 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
5937 AATGGTAGAC
5947 ATATCCGAATAACATT
1 ATATCCGAATAACA-T
*
5963 ATATCCGAATAACAC
1 ATATCCGAATAACAT
*
5978 ATA-CTCGAATATCAT
1 ATATC-CGAATAACAT
*
5993 ATATCTGAAT
1 ATATCCGAAT
6003 TTTGATCTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.03
15 18 0.53
16 15 0.44
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (15 bp):
ATATCCGAATAACAT
Found at i:16801 original size:21 final size:21
Alignment explanation
Indices: 16762--16801 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16752 CTTTTTTCAT
* **
16762 TTTATTTTCTTTTCGAATTAA
1 TTTAATTTCTTTTAAAATTAA
16783 TTTAATTTCTTTTAAAATT
1 TTTAATTTCTTTTAAAATT
16802 CTAAGCATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTAATTTCTTTTAAAATTAA
Found at i:17432 original size:16 final size:16
Alignment explanation
Indices: 17407--17440 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17397 ACTCTCTTTA
*
17407 TTTTTCTTTCAAATCT
1 TTTTTATTTCAAATCT
*
17423 TTTTTATTTCAACTCT
1 TTTTTATTTCAAATCT
17439 TT
1 TT
17441 AAAATCCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTATTTCAAATCT
Found at i:31830 original size:32 final size:32
Alignment explanation
Indices: 31794--31878 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 32
31784 AACCGATCTG
*
31794 ATATTGATCCGACCCCAAAATCAA-CTGATCCA
1 ATATTGATCCGACCCAAAAATCAACCT-ATCCA
* *
31826 ATATTGATCCGAACCGAAAAA-CAACCTATCCG
1 ATATTGATCCG-ACCCAAAAATCAACCTATCCA
* *
31858 ATAATCATCCGACCCAAAAAT
1 ATATTGATCCGACCCAAAAAT
31879 TGACCTCACC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
31 8 0.18
32 27 0.61
33 9 0.20
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.20
Consensus pattern (32 bp):
ATATTGATCCGACCCAAAAATCAACCTATCCA
Found at i:35451 original size:12 final size:12
Alignment explanation
Indices: 35434--35488 Score: 92
Period size: 12 Copynumber: 4.5 Consensus size: 12
35424 AGGAAATTAT
35434 TTTTTAAAAATA
1 TTTTTAAAAATA
35446 TTTTTAAAAATA
1 TTTTTAAAAATA
35458 TTTTTTAAAAATA
1 -TTTTTAAAAATA
*
35471 TTTTTAATAATA
1 TTTTTAAAAATA
35483 TTTTTA
1 TTTTTA
35489 TTTTTTTAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
12 29 0.71
13 12 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTTAAAAATA
Found at i:35459 original size:25 final size:25
Alignment explanation
Indices: 35431--35487 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
35421 AAAAGGAAAT
35431 TATTTTTTAAAAATATTTTTAAAAA
1 TATTTTTTAAAAATATTTTTAAAAA
*
35456 TATTTTTTAAAAATATTTTTAATAA
1 TATTTTTTAAAAATATTTTTAAAAA
35481 TATTTTT
1 TATTTTT
35488 ATTTTTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTTTTTAAAAATATTTTTAAAAA
Found at i:41282 original size:74 final size:75
Alignment explanation
Indices: 41167--41331 Score: 251
Period size: 74 Copynumber: 2.2 Consensus size: 75
41157 AGTTTAGGGA
* * *
41167 GGTACCGATACCCCTCATAGGGTCTATCGATACCCCTATGCCAATTTTGGCTATGAGAAAAACAT
1 GGTACCGATACCCCTCATAAGG-CTACCGATAACCCTATGCCAATTTTGGCTATGAGAAAAACAT
*
41232 AATGCTAAATG
65 AATGCCAAATG
* *
41243 GGTACCGATACCCCTCATAAGG-TACCGATAACCCTATGCCAATTTTGGCTCTGAGAAAAACGTA
1 GGTACCGATACCCCTCATAAGGCTACCGATAACCCTATGCCAATTTTGGCTATGAGAAAAACATA
*
41307 ATGCCCAATG
66 ATGCCAAATG
41317 GGTACCGATACCCCT
1 GGTACCGATACCCCT
41332 GATCATTTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
74 61 0.74
76 21 0.26
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (75 bp):
GGTACCGATACCCCTCATAAGGCTACCGATAACCCTATGCCAATTTTGGCTATGAGAAAAACATA
ATGCCAAATG
Found at i:47158 original size:44 final size:44
Alignment explanation
Indices: 47082--47183 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 44
47072 TTATGCTAAG
* * *
47082 TGCATCGATACACTATGAAAGTTTACTTATGCATTCCTTGAATA
1 TGCATCGATACACTATGAAAGTCTACTGATGCATTCATTGAATA
*
47126 TGCATCGATACACTATG-AAGATGCT-CTGATGCATTCATTGAATG
1 TGCATCGATACACTATGAAAG-T-CTACTGATGCATTCATTGAATA
* *
47170 TGTACCGATACACT
1 TGCATCGATACACT
47184 CTGTAGTGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
43 3 0.06
44 46 0.92
45 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TGCATCGATACACTATGAAAGTCTACTGATGCATTCATTGAATA
Found at i:47685 original size:14 final size:13
Alignment explanation
Indices: 47668--47704 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
47658 CTACATATTG
47668 ATTTTTCAAACAT
1 ATTTTTCAAACAT
47681 CATTTTTCAAACAT
1 -ATTTTTCAAACAT
*
47695 AGTTTTCAAA
1 ATTTTTCAAA
47705 ATTTTCCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (13 bp):
ATTTTTCAAACAT
Found at i:54390 original size:20 final size:20
Alignment explanation
Indices: 54335--54391 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
54325 TGTTACAACG
* *
54335 AATTTGACAAAACCGATTGG
1 AATTTGACAAAACCGGTTGC
* *
54355 AAATTGACAAAACCGGTTTC
1 AATTTGACAAAACCGGTTGC
54375 AATTTGACAAAACCGGT
1 AATTTGACAAAACCGGT
54392 AAAGAGCTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (20 bp):
AATTTGACAAAACCGGTTGC
Found at i:54720 original size:198 final size:195
Alignment explanation
Indices: 54354--54958 Score: 804
Period size: 197 Copynumber: 3.1 Consensus size: 195
54344 AAACCGATTG
* * *
54354 GAAA-TTGACAAAACCGGTTTCAATTTGACAAAACCGGTAAAGAGCTACCGGAATTATTAAAATT
1 GAAATTTGACAAAAACGGTTTCAATTTGACAAAACCGGTAAAGAGCTACCAGAATTGTTAAAATT
* * * * *
54418 TCTATCGATACGTTTGTAAGTATATGTACCAAAGTATCGGTACTGTAGGAATTTAAAAGAATTAC
66 TGTATCGATA-TTTTATAAGTATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGC
* * * * *
54483 AATAAT-TGCGGCC-ATAAAGTATCGATACCTTACACACATGTATCGCTAGATGAAAATATAGCA
130 AATAATAT-C-GCCTATAAAGTATCAATA-CTTAGACACATGTATCGCTACATGACAATATAACA
54546 GGTT
192 GGTT
* * * * *
54550 GAAATTTGATAAAAATCGGTTTTAATTTGACAAAACCGATAAAAAGCTACCAGAATTGTTGAAAT
1 GAAATTTGACAAAAA-CGGTTTCAATTTGACAAAACCGGTAAAGAGCTACCAGAATTGTTAAAAT
54615 TTGTATCGATATATTTATAAGTATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTG
65 TTGTATCGATAT-TTTATAAGTATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTG
**
54680 CAATAATATCGTTTATAAAGTATCAATACGTTAGACACATGTATCGAC-ACATGACAATATAACA
129 CAATAATATCGCCTATAAAGTATCAATAC-TTAGACACATGTATCG-CTACATGACAATATAACA
54744 GGTT
192 GGTT
* * * * *
54748 TAAATTTGAGAAAAACAGTTTCAATTTGACAAAACCGGTAAAGAGCTACCAGAATGGCTAAAATT
1 GAAATTTGACAAAAACGGTTTCAATTTGACAAAACCGGTAAAGAGCTACCAGAATTGTTAAAATT
* * *
54813 TGTATCGATACTTTTATAAGTATATGAACCAAAGTATCAGTACTTTAGGAATTTAAAAGAATTGT
66 TGTATCGATA-TTTTATAAGTATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGC
** * *
54878 AATAATAGAGCCTATAAAGTATCAACAACTTAGACACATGTATCGATACATGACAATATAACAGG
130 AATAATATCGCCTATAAAGTATCAA-TACTTAGACACATGTATCGCTACATGACAATATAACAGG
54943 TT
194 TT
54945 GAAATTTGACAAAA
1 GAAATTTGACAAAA
54959 CCGGGAAATC
Statistics
Matches: 359, Mismatches: 40, Indels: 19
0.86 0.10 0.05
Matches are distributed among these distances:
196 4 0.01
197 182 0.51
198 171 0.48
199 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (195 bp):
GAAATTTGACAAAAACGGTTTCAATTTGACAAAACCGGTAAAGAGCTACCAGAATTGTTAAAATT
TGTATCGATATTTTATAAGTATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGCA
ATAATATCGCCTATAAAGTATCAATACTTAGACACATGTATCGCTACATGACAATATAACAGGTT
Found at i:54773 original size:20 final size:21
Alignment explanation
Indices: 54731--54781 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
54721 TATCGACACA
54731 TGACAATATAACAGGTTTAAATT
1 TGACAA-A-AACAGGTTTAAATT
* *
54754 TGAGAAAAACA-GTTTCAATT
1 TGACAAAAACAGGTTTAAATT
54774 TGACAAAA
1 TGACAAAA
54782 CCGGTAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 15 0.60
21 4 0.16
22 1 0.04
23 5 0.20
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (21 bp):
TGACAAAAACAGGTTTAAATT
Found at i:57056 original size:18 final size:18
Alignment explanation
Indices: 57033--57083 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
57023 AAGTTACAAC
*
57033 AAATTTTGTATGTGAGTG
1 AAATTTTGTATGTGAATG
57051 AAATTTTGTATGTGAATG
1 AAATTTTGTATGTGAATG
*
57069 AAATTATGTATGTGA
1 AAATTTTGTATGTGA
57084 TTACCAAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (18 bp):
AAATTTTGTATGTGAATG
Found at i:57595 original size:20 final size:20
Alignment explanation
Indices: 57550--57587 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
57540 GTAAATACCA
57550 AGTATCGATACTCTTTATAT
1 AGTATCGATACTCTTTATAT
*
57570 AGGTATGGATACT-TTTAT
1 A-GTATCGATACTCTTTAT
57588 TTCAGTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (20 bp):
AGTATCGATACTCTTTATAT
Found at i:58302 original size:15 final size:15
Alignment explanation
Indices: 58269--58324 Score: 67
Period size: 16 Copynumber: 3.6 Consensus size: 15
58259 AACCAAATCA
*
58269 AAAGTAACTCGAACCG
1 AAAGTAAC-CGAACTG
*
58285 AAAGCAACCGAACTG
1 AAAGTAACCGAACTG
*
58300 AAAGTAACCTTAACTG
1 AAAGTAACC-GAACTG
58316 AAAGTAACC
1 AAAGTAACC
58325 CAATTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 14 0.40
16 21 0.60
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.14
Consensus pattern (15 bp):
AAAGTAACCGAACTG
Found at i:65546 original size:9 final size:9
Alignment explanation
Indices: 65532--65559 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
65522 ATTAATGGGG
65532 TAATTTTAT
1 TAATTTTAT
65541 TAATTTTAT
1 TAATTTTAT
65550 TAATTTTAT
1 TAATTTTAT
65559 T
1 T
65560 TAGCTTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TAATTTTAT
Found at i:65631 original size:34 final size:36
Alignment explanation
Indices: 65588--65658 Score: 101
Period size: 34 Copynumber: 2.0 Consensus size: 36
65578 CTAAAAATTT
65588 AACATATAAACAAAAAC-TAAATGAACAT-TAAATG
1 AACATATAAACAAAAACGTAAATGAACATATAAATG
* **
65622 AACATATAAACAAATACGTTCATGAACATATAAATG
1 AACATATAAACAAAAACGTAAATGAACATATAAATG
65658 A
1 A
65659 GTACATTCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 16 0.50
35 9 0.28
36 7 0.22
ACGTcount: A:0.58, C:0.13, G:0.07, T:0.23
Consensus pattern (36 bp):
AACATATAAACAAAAACGTAAATGAACATATAAATG
Found at i:65667 original size:24 final size:24
Alignment explanation
Indices: 65619--65674 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
65609 TGAACATTAA
*
65619 ATGAACATATAAACAAATACGTTC
1 ATGAACATATAAACAAATACATTC
** *
65643 ATGAACATATAAATGAGTACATTC
1 ATGAACATATAAACAAATACATTC
*
65667 ACGAACAT
1 ATGAACAT
65675 TAAGCGAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.25
Consensus pattern (24 bp):
ATGAACATATAAACAAATACATTC
Found at i:67214 original size:20 final size:19
Alignment explanation
Indices: 67172--67241 Score: 86
Period size: 20 Copynumber: 3.6 Consensus size: 19
67162 CAAATATTTT
67172 TATGAATAGTACTATAATG
1 TATGAATAGTACTATAATG
*
67191 TATGAATAGTACTGATATTG
1 TATGAATAGTACT-ATAATG
*
67211 TATGAATAGTACATATACTG
1 TATGAATAGTAC-TATAATG
* *
67231 TGTGAACAGTA
1 TATGAATAGTA
67242 ATGAACAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
19 13 0.29
20 31 0.69
21 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.36
Consensus pattern (19 bp):
TATGAATAGTACTATAATG
Found at i:67942 original size:31 final size:31
Alignment explanation
Indices: 67855--67942 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
67845 CCTGAAGGAC
* * *
67855 CAGTCCATAGGTCCCAAAGAACTTAGGTAAT
1 CAGTCCATATGTCCCGAAGAACATAGGTAAT
* *
67886 CAGTCCATATATCCCGAAGATCATAGGTAAT
1 CAGTCCATATGTCCCGAAGAACATAGGTAAT
* *
67917 CAGTCCATATGTCTCGAATAACATAG
1 CAGTCCATATGTCCCGAAGAACATAG
67943 ATAACCCTTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAT
Found at i:69305 original size:23 final size:23
Alignment explanation
Indices: 69279--69326 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
69269 ATAAAGTACA
*
69279 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
69302 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
69325 AT
1 AT
69327 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:70004 original size:330 final size:330
Alignment explanation
Indices: 69366--70026 Score: 1222
Period size: 330 Copynumber: 2.0 Consensus size: 330
69356 TTATACCGAT
*
69366 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTTCATACTTTTTATAAAAAGGA
1 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
*
69431 TCGATATTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
66 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
69496 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
131 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
* *
69561 TAAAATATTATTTAGAATTTTAATTTAATAATAATATCGTAACGTAAAAAATAAATCATTAGACG
196 TAAAATAATATTTAGAATTTTAATTTAATAATAATATCGTAACGAAAAAAATAAATCATTAGACG
69626 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
261 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
69691 CAGTG
326 CAGTG
69696 AGCATTGCAAATTTACCTATTACA-T-TATTATATTGAAAGTGTCCATACTTTTTATAAAAA-GA
1 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
69758 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTC
66 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
69822 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
131 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
69887 TAAAATAATATTTAGAATTTTTAATTTAATAATATATATATCGTAACGAAAAAAATAAATCATTA
196 TAAAATAATATTTAGAA-TTTTAATTTAAT-A-ATA-ATATCGTAACGAAAAAAATAAATCATTA
69952 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTT
257 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTT
70017 TCCACAGTG
322 TCCACAGTG
70026 A
1 A
70027 AAAAAGTATG
Statistics
Matches: 323, Mismatches: 4, Indels: 8
0.96 0.01 0.02
Matches are distributed among these distances:
326 107 0.33
327 51 0.16
328 35 0.11
329 4 0.01
330 126 0.39
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (330 bp):
AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
TAAAATAATATTTAGAATTTTAATTTAATAATAATATCGTAACGAAAAAAATAAATCATTAGACG
CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
CAGTG
Found at i:70105 original size:23 final size:23
Alignment explanation
Indices: 70079--70141 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
70069 ATATAACCAC
70079 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
70102 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
70125 TACCTATTACATCATAT
1 TACCTATTACATTATAT
70142 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:70596 original size:39 final size:39
Alignment explanation
Indices: 70545--70628 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
70535 AAGTTGTAGA
*
70545 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
1 TTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGGAT
*
70584 TTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGGAT
1 TTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGGAT
70623 TTTGAT
1 TTTGAT
70629 GAGCATCGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.17, C:0.14, G:0.20, T:0.49
Consensus pattern (39 bp):
TTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGGAT
Found at i:70909 original size:18 final size:18
Alignment explanation
Indices: 70886--70922 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70876 GCCGAAATAT
70886 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
70904 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
70922 A
1 A
70923 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:71344 original size:25 final size:25
Alignment explanation
Indices: 71310--71360 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
71300 TTTTTCCAAA
*
71310 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
71335 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
71360 T
1 T
71361 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:71613 original size:25 final size:25
Alignment explanation
Indices: 71556--71621 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
71546 CACTCAAAAG
*
71556 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
71581 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
71606 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
71622 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:74396 original size:183 final size:181
Alignment explanation
Indices: 74083--74423 Score: 574
Period size: 183 Copynumber: 1.9 Consensus size: 181
74073 TTAAAATTAC
* *
74083 CGACACTTTTTAAATGGTATCGACACATTTTCTTCCAATCTGGACATAAAGTACCGACACAATAT
1 CGACACTTTTTAAATCGTATCGACACATTTTCTTCCAATATGGACATAAAGTACCGACACAATAT
* *
74148 TATAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATATCGGTTAT
66 TAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
*
74213 ATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
74264 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACAC-TTTTTAAATCGTATCGACACA-TTTTCTTCCAATATGGACATAAAGTACCGACACAAT
*
74329 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACTGGTATATTTATACCGGTT
64 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * **
74394 ATATTGCAAATTTACCTATTTTATTATAAT
129 ATATTACAAAATTACCTATTACATTATAAT
74424 ATGTTGAAAG
Statistics
Matches: 148, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
181 6 0.04
182 20 0.14
183 122 0.82
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (181 bp):
CGACACTTTTTAAATCGTATCGACACATTTTCTTCCAATATGGACATAAAGTACCGACACAATAT
TAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
ATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:74757 original size:20 final size:20
Alignment explanation
Indices: 74728--74765 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74718 TCCACAGTGG
*
74728 AAAAGTATAGACACTTTATA
1 AAAAGGATAGACACTTTATA
*
74748 AAAAGGATAGATACTTTA
1 AAAAGGATAGACACTTTA
74766 CAATATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (20 bp):
AAAAGGATAGACACTTTATA
Found at i:75855 original size:3 final size:3
Alignment explanation
Indices: 75847--75921 Score: 69
Period size: 3 Copynumber: 25.0 Consensus size: 3
75837 ACTTGTTTGG
* * * **
75847 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * *
75895 AGC TTC ATC GTC ATC ATC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
75922 TTTATCGTCA
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.24, C:0.35, G:0.07, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:75864 original size:12 final size:12
Alignment explanation
Indices: 75851--75939 Score: 79
Period size: 12 Copynumber: 7.4 Consensus size: 12
75841 GTTTGGATCA
* *
75851 TCATCTTCATCA
1 TCATCGTCATCT
* *
75863 TCATCATCATCA
1 TCATCGTCATCT
* *
75875 TCGTCATCATCT
1 TCATCGTCATCT
* *
75887 TCATCGCCAGCT
1 TCATCGTCATCT
*
75899 TCATCGTCATCA
1 TCATCGTCATCT
75911 TCATCGTCATCT
1 TCATCGTCATCT
* *
75923 TTATCGTCAGCT
1 TCATCGTCATCT
75935 TCATC
1 TCATC
75940 TTCTGCGACC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 63 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:75870 original size:18 final size:18
Alignment explanation
Indices: 75851--75942 Score: 67
Period size: 18 Copynumber: 5.1 Consensus size: 18
75841 GTTTGGATCA
* *
75851 TCATCTTCATCATCATCA
1 TCATCATCATCATCATCT
*
75869 TCATCATCGTCATCATCT
1 TCATCATCATCATCATCT
** * * *
75887 TCATCGCCAGCTTCATCG
1 TCATCATCATCATCATCT
*
75905 TCATCATCATCGTCATCT
1 TCATCATCATCATCATCT
* * * *
75923 TTATCGTCAGCTTCATCT
1 TCATCATCATCATCATCT
75941 TC
1 TC
75943 TGCGACCGCT
Statistics
Matches: 55, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.38
Consensus pattern (18 bp):
TCATCATCATCATCATCT
Found at i:75903 original size:36 final size:36
Alignment explanation
Indices: 75863--75939 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
75853 ATCTTCATCA
*
75863 TCATCATCATCATCGTCATCATCTTCATCGCCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
* * * *
75899 TCATCGTCATCATCATCGTCATCTTTATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
75935 TCATC
1 TCATC
75940 TTCTGCGACC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGCCAGCT
Found at i:77934 original size:197 final size:196
Alignment explanation
Indices: 77399--78555 Score: 2135
Period size: 196 Copynumber: 5.9 Consensus size: 196
77389 TTTAAATTAG
77399 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
77464 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
77529 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCA-CCTG-TTTCCATTCATTCTGGAAAA
131 CGACAC-TTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
77592 AAA
194 AAA
77595 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
77660 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACATTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
77725 CGACACTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
131 CGACACTTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
77790 AA
195 AA
77792 TATCGACACAAACTATATTAGTGTCGACACATTA-TTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
77856 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
77921 CGACACTTTTTATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCA-TCATTCTGGAAAAAA
131 CGACACTTTTTATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAAA
77985 A
196 A
*
77986 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
78051 ATTGTACCGGTTAGATTGAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
66 ATTGTACCGGTTAGATTG-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
* *
78116 TTGACACTTTTTATATGGATCGACACTTTATGAGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
130 TCGACACTTTTTATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
78181 AA
195 AA
* *
78183 TATCGACACAAACTATATTAGTGTTGACATATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
78248 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
78313 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACAC-TTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
78378 AAA
194 AAA
78381 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
78446 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
78510 TTGACACTTTTTTATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATGGATCGACACTTTATGGGTGCACCCTGTT
78556 GGCCATATTG
Statistics
Matches: 939, Mismatches: 14, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
194 50 0.05
195 118 0.13
196 389 0.41
197 191 0.20
198 184 0.20
199 7 0.01
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (196 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAAA
A
Found at i:78713 original size:19 final size:18
Alignment explanation
Indices: 78674--78721 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
78664 TTATATTCAC
*
78674 ATACAAAAATATAATCGT
1 ATACAAAATTATAATCGT
*
78692 ATACAAAATTATAAATCTT
1 ATACAAAATTAT-AATCGT
78711 ATACAAAATTA
1 ATACAAAATTA
78722 ACCCTACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.31
Consensus pattern (18 bp):
ATACAAAATTATAATCGT
Found at i:80545 original size:32 final size:32
Alignment explanation
Indices: 80509--80572 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
80499 CATCTTAATA
*
80509 TCACCCCTTAACACCCCAACTTCTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTCACCACT
* *
80541 TCACCCCTCAACACCTCTACTTCTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTCACCACT
80573 CCATCTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.27
Consensus pattern (32 bp):
TCACCCCTCAACACCCCAACTTCTTCACCACT
Found at i:80646 original size:21 final size:21
Alignment explanation
Indices: 80606--80670 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
80596 CCCCTTATGC
* *
80606 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
80627 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
80648 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
80669 CT
1 CT
80671 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:82920 original size:17 final size:18
Alignment explanation
Indices: 82898--82940 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
82888 ATATATCCGG
82898 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
82915 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
82935 TATCAT
1 TATCAT
82941 ATTTTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:83105 original size:19 final size:20
Alignment explanation
Indices: 83072--83116 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
83062 CACTTTTAAA
83072 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
83091 TGTTACCGG-TTTATCATATT
1 T-TTACCGGTTTTATCATATT
83111 TTTACC
1 TTTACC
83117 TGGTATCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.53
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:83581 original size:229 final size:228
Alignment explanation
Indices: 83180--83628 Score: 790
Period size: 229 Copynumber: 2.0 Consensus size: 228
83170 TTAAAACTGC
83180 TTTGAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATATTTTCCACCTACAATA
1 TTTGAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATATTTTCCACCTACAATA
**
83245 TTAATTTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTAT
66 TTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTAT
* *
83310 TTAGAATTTAAATTTAACAATATTAACCAAATATAATAATAAATATGTTTTCAACAGTGAAATAA
131 TTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTC-ACAGTGAAATAA
* *
83375 GTATGGACACTTTTATAAAAATGATATATACTTT
195 GTATGAACACTTTTATAAAAAGGATATATACTTT
* *
83409 TTTGAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATA
1 TTTGAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATATTTTCCACCTACAATA
*
83474 TTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTAT
66 TTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTAT
* *
83539 TTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTCACAGTGAAATAAG
131 TTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATAAG
83604 TATGAACACTTTTATAAAAAGGATA
196 TATGAACACTTTTATAAAAAGGATA
83629 GATAATTTAC
Statistics
Matches: 209, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
228 36 0.17
229 173 0.83
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (228 bp):
TTTGAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATATTTTCCACCTACAATA
TTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTAT
TTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATAAG
TATGAACACTTTTATAAAAAGGATATATACTTT
Found at i:84458 original size:23 final size:23
Alignment explanation
Indices: 84406--84464 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
84396 TTAACATGTC
*
84406 ACATTATTAAATTAATAATATTTA
1 ACATT-TTAAATTAATAATATTAA
84430 ACATTTTAAATATAATAATA-TAA
1 ACATTTTAAAT-TAATAATATTAA
* *
84453 ATATTTAAAATT
1 ACATTTTAAATT
84465 TAATTTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 1 0.03
23 17 0.55
24 13 0.42
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
ACATTTTAAATTAATAATATTAA
Found at i:84985 original size:22 final size:20
Alignment explanation
Indices: 84954--84995 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
84944 ATTTTTTTGA
84954 GAAATTAAGAATTTATGGATT
1 GAAATTAAGAATTT-TGGATT
84975 GAAATGTAAGAATTTTGGATT
1 GAAAT-TAAGAATTTTGGATT
84996 TTGAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (20 bp):
GAAATTAAGAATTTTGGATT
Found at i:84993 original size:21 final size:21
Alignment explanation
Indices: 84954--85004 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 21
84944 ATTTTTTTGA
84954 GAAATTAAGAATTTATGGATT
1 GAAATTAAGAATTTATGGATT
84975 GAAATGTAAGAATTT-TGGATTTT
1 GAAAT-TAAGAATTTATGGA--TT
84998 GAAATTA
1 GAAATTA
85005 TAGTAAGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 9 0.33
22 11 0.41
23 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (21 bp):
GAAATTAAGAATTTATGGATT
Found at i:85733 original size:21 final size:21
Alignment explanation
Indices: 85685--85735 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
85675 CAATACGAAG
* *
85685 ACGTTTCGGTACTCGTTGGGG
1 ACGTTTCGGTACTCGCTGGGA
**
85706 ATATTTCGGTACTCGCTGGGA
1 ACGTTTCGGTACTCGCTGGGA
85727 ACGTTTCGG
1 ACGTTTCGG
85736 GGACAACATG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.14, C:0.20, G:0.33, T:0.33
Consensus pattern (21 bp):
ACGTTTCGGTACTCGCTGGGA
Found at i:86714 original size:40 final size:38
Alignment explanation
Indices: 86595--86726 Score: 116
Period size: 40 Copynumber: 3.4 Consensus size: 38
86585 AATTTGACAC
86595 TTTAATATTATGGTTTGATTATAAATTTTATTATTCTAGAA
1 TTTAATATTAT-GTTTG-TTATAAATTTTATTATTCTA-AA
* *
86636 -TTAATATTATG---GTT-TAAATATTGA-GATT-TAACA
1 TTTAATATTATGTTTGTTATAAAT-TTTATTATTCTAA-A
86669 TTTTAATATTATGATTTGTTTATAAATTTTATTATTCTAAA
1 -TTTAATATTATG-TTTG-TTATAAATTTTATTATTCTAAA
86710 TTTAATATTATAGTTTG
1 TTTAATATTAT-GTTTG
86727 AGTCTTGATA
Statistics
Matches: 74, Mismatches: 4, Indels: 27
0.70 0.04 0.26
Matches are distributed among these distances:
32 1 0.01
33 3 0.04
34 8 0.11
35 16 0.22
36 1 0.01
39 2 0.03
40 30 0.41
41 10 0.14
42 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (38 bp):
TTTAATATTATGTTTGTTATAAATTTTATTATTCTAAA
Found at i:86740 original size:75 final size:75
Alignment explanation
Indices: 86561--86742 Score: 231
Period size: 75 Copynumber: 2.4 Consensus size: 75
86551 TTTTCTATAC
* * * * *
86561 TTAATATTATTGTTTTAGTCTTAAAATTTGACACTTTAATATTATGGTTTGATTATAAATTTTAT
1 TTAATATTATAGTTTAAGTCTTGAAATTTAACACTTTAATATTATGATTTGATTATAAATTTTAT
86626 TATTCTAGAA
66 TATTCTAGAA
* * * * * *
86636 TTAATATTATGGTTTAAATATTGAGATTTAACATTTTAATATTATGATTTGTTTATAAATTTTAT
1 TTAATATTATAGTTTAAGTCTTGAAATTTAACACTTTAATATTATGATTTGATTATAAATTTTAT
86701 TATTCTA-AA
66 TATTCTAGAA
* *
86710 TTTAATATTATAGTTTGAGTCTTGATATTTAAC
1 -TTAATATTATAGTTTAAGTCTTGAAATTTAAC
86743 TTTATATATA
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
74 2 0.02
75 89 0.98
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.52
Consensus pattern (75 bp):
TTAATATTATAGTTTAAGTCTTGAAATTTAACACTTTAATATTATGATTTGATTATAAATTTTAT
TATTCTAGAA
Found at i:88351 original size:2 final size:2
Alignment explanation
Indices: 88344--88371 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
88334 GGCACAATTA
88344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
88372 GCAGATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93024 original size:23 final size:23
Alignment explanation
Indices: 92997--93046 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
92987 ATACTTTATA
*
92997 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATC
93020 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATC
93043 ATAT
1 ATAT
93047 TTTTACCTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATC
Found at i:93090 original size:22 final size:22
Alignment explanation
Indices: 93065--93109 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
93055 GATATATTGT
* *
93065 AAAGTATCGATCCTTTTTATAA
1 AAAGGATCGATACTTTTTATAA
*
93087 AAAGGATCGATACTTTTTTTAA
1 AAAGGATCGATACTTTTTATAA
93109 A
1 A
93110 GTTGTGTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (22 bp):
AAAGGATCGATACTTTTTATAA
Found at i:93500 original size:23 final size:23
Alignment explanation
Indices: 93465--93537 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
93455 ATACTTTACA
*
93465 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
93488 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
93511 ATATAAGCGCTACATATTACATC
1 ATATAAGCGCTACCTATTACATT
93534 ATAT
1 ATAT
93538 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:93992 original size:23 final size:23
Alignment explanation
Indices: 93956--94028 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
93946 ATACTTTACA
93956 ATATAAGCA-CTACCTATTACATT
1 ATATAAG-AGCTACCTATTACATT
*
93979 ATATAA-ACGTTACCTATTACATT
1 ATATAAGA-GCTACCTATTACATT
*
94002 ATATAAGAGCTACCTATTACATC
1 ATATAAGAGCTACCTATTACATT
94025 ATAT
1 ATAT
94029 TTTTACATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.02
23 42 0.95
24 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGAGCTACCTATTACATT
Found at i:94479 original size:23 final size:23
Alignment explanation
Indices: 94444--94516 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
94434 ATACTTTACA
* *
94444 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
94467 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
94490 ATATAAACGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
94513 ATAT
1 ATAT
94517 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:94784 original size:489 final size:490
Alignment explanation
Indices: 92997--96031 Score: 5485
Period size: 488 Copynumber: 6.2 Consensus size: 490
92987 ATACTTTATA
*
92997 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTGA-TATA
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCT-ATTATA
* * * * *
93061 TTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTGTGTAATTTATGT
65 TTG-AAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGT
* * *
93126 TTCAA-ATTTTTTAATAGTATTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
129 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
* *
93190 ACAAAAAATTATTTGATTGTTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
194 ACAAAAAATTATTTGATTG-TTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAAT
*
93255 ATTAACCAAAGATAATAATCAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATAT
258 ATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATAT
* *
93320 ATATCGTAACGTAAAAAATAAATAATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
323 ATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
*
93385 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAACAGTATGGACACTTTTATAAAAAG
388 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAG
93450 GATAGATACTTTACAATATAAGCACTACCTATTACATT
453 GATAGATACTTTACAATATAAGCACTACCTATTACATT
*
93488 ATATAAACGCTACCTATTACATTATATAAGCGCTACATATTACATCATATTTTTACCTATTATAT
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
* **
93553 TGAAAGTGTCCATATTTTTTATAAAAAGGATTAATACTTTTTTTTAAAGTTATGTAATTTATGTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA-TTTTTTTTAAAGTTATGTAATTTATGTT
* *
93618 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
130 TCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
* *
93683 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
195 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
* * *
93748 TAACAAAAGATAATAATAAATATGCAATATATATGTTTATTATTTTTAATTTAATAATAATATAT
260 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
93813 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
325 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
93878 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
390 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
93943 TAGATACTTTACAATATAAGCACTACCTATTACATT
455 TAGATACTTTACAATATAAGCACTACCTATTACATT
* * *
93979 ATATAAACGTTACCTATTACATTATATAAGAGCTACCTATTACATCATATTTTTACATATTATAT
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
*
94044 TGAAAGTGTCCATACTTTTTATAAAAATGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
*
94109 CAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
131 CAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
*
94174 AAAAAATTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
196 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
*
94238 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTATTTTTAATTTAATAATAATATATA
261 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* *
94303 TCGTAACGT-AAAAATAAATCATTAAACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
326 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
94367 AAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAGGAT
391 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
94432 AGATACTTTACAATATAAGCACTACCTATTACATT
456 AGATACTTTACAATATAAGCACTACCTATTACATT
*
94467 ATATAAACGCTACCTATTACATTATATAAACGCTACCTATTACATCATATTTTTACCTATTATAT
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
94532 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
* *
94597 CAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATATCATTTACAG
131 CAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
94662 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
196 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
94727 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
261 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
94792 CCGTAACGT-CAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
326 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
94856 AAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
391 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
*
94921 AGATACTTTACAATATAAACACTACCTATTACATT
456 AGATACTTTACAATATAAGCACTACCTATTACATT
*
94956 ATATAAACACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
95021 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
* * *
95086 CAA-TTTTTTTAACAGTGTTTCATGTTTTCTACCTACAATATTAATTTAATAATTTCATTTATAG
131 CAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
95150 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
196 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
95215 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
261 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
95280 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
326 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
95345 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
391 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
95410 AGATACTTTACAATATAAGCACTACCTATTACATT
456 AGATACTTTACAATATAAGCACTACCTATTACATT
95445 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA-
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
95509 TGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATATTTTTTTTTAAA-TTATGTAATTTATGTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA-TTTTTTTTAAAGTTATGTAATTTATGTT
95572 TCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
130 TCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
95637 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
195 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
*
95702 TAACCAAAGATAATAATAATTATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
260 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
95767 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
325 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
95832 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGA
390 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
95897 TAGATACTTTACAATATAAGCACTACCTATTACATT
455 TAGATACTTTACAATATAAGCACTACCTATTACATT
* * *
95933 ATATAAATGTTACCTATTACATTATATAAGCGCTACCTATTACATTATATTTTTACCTATTATAT
1 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
*
95998 TGAAAGTGTCCATACTTTTTATAAAAAGTATCGA
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGA
96032 CACTTTATGC
Statistics
Matches: 2466, Mismatches: 69, Indels: 19
0.97 0.03 0.01
Matches are distributed among these distances:
487 40 0.02
488 991 0.40
489 747 0.30
490 155 0.06
491 458 0.19
492 75 0.03
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (490 bp):
ATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTT
CAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAAGCACTACCTATTACATT
Found at i:94963 original size:23 final size:23
Alignment explanation
Indices: 94933--95005 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
94923 ATACTTTACA
94933 ATATAAACACTACCTATTACATT
1 ATATAAACACTACCTATTACATT
94956 ATATAAACACTACCTATTACATT
1 ATATAAACACTACCTATTACATT
* * *
94979 ATATAAGCGCTACCTATTACATC
1 ATATAAACACTACCTATTACATT
95002 ATAT
1 ATAT
95006 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATAAACACTACCTATTACATT
Found at i:95027 original size:977 final size:979
Alignment explanation
Indices: 92594--96031 Score: 5950
Period size: 977 Copynumber: 3.5 Consensus size: 979
92584 TTATAATATG
* * *
92594 TTGAAAGTGTTCATATTTTTTTATAAAAATGATCGATACTTTTTTTTAAAGTTATGTAATTTATG
1 TTGAAAGTGTCCATA-CTTTTTATAAAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATG
* * * *
92659 TTTCAA--ATTTTTAATAGTGTTTCATGTTTTCCACCTATAATATTAATTTAATAATTTCATTTG
65 TTTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTA
* *
92722 CACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
130 CACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAAT
* *
92787 ATTAACCAAATATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATAT
195 ATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATAT
* ** *
92852 ATACCGTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTAATATCTTAAAACTCA
260 ATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
* * *
92917 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATTGACACTTCTAT--AAA-
325 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAG
* *
92979 -A-AG----------A-AT-AG-A-TA-CT-TT--ATAATATAAGCGCTACCTATTACATTATAT
390 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
* * *
93024 AAGCGCTACCTATTACATCATATTTTTACCTGA-TATATTGTAAAGTATCGATCCTTTTTATAAA
455 AAGCGCTACCTATTACATCATATTTTTACCT-ATTATATTG-AAAGTGTCCATACTTTTTATAAA
* * * *
93088 AAGGATCGATACTTTTTTTAAAGTTGTGTAATTTATGTTTCAAATTTTTTAATAGTATTTCATGT
518 AAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGT
93153 TTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTTGATA
583 TTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA-T-TTTTTGATA
* * *
93218 TTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATCAATATGTA
646 TTTTATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTA
*
93283 ATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATAATTA
711 ATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTA
93348 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTT
776 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTT
*
93413 TCCACAGTGAAAACAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTAC
841 TCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTAC
*
93478 CTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACATATTACATCATATTTTTA
906 CTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTA
93543 CCTATTATA
971 CCTATTATA
* **
93552 TTGAAAGTGTCCATATTTTTTATAAAAAGGATTAATACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGT
* *
93617 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
66 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
* *
93682 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
131 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
* * *
93747 TTAACAAAAGATAATAATAAATATGCAATATATATGTTTATTATTTTTAATTTAATAATAATATA
196 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
*
93812 TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
261 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
93877 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
326 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
*
93942 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACCTATTACATTATATA
391 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
* * *
94007 AGAGCTACCTATTACATCATATTTTTACATATTATATTGAAAGTGTCCATACTTTTTATAAAAAT
456 AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
94072 GATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTT
521 GATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTT
*
94137 TCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTT
585 TCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTTTTTGATATTTT
94202 ATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
650 ATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
* *
94267 ATATGTTTATTATTTTTAATTTAATAATAATATATATCGTAACGT-AAAAATAAATCATTAAACG
715 ATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACG
94331 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
780 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
*
94396 CAATGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
845 CAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
*
94461 TACATTATATAAACGCTACCTATTACATTATATAAACGCTACCTATTACATCATATTTTTACCTA
910 TACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTA
94526 TTATA
975 TTATA
94531 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA-TTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGT
*
94595 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATATCATTTAC
66 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
*
94660 AGAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
131 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
94725 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
196 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
*
94790 TACCGTAACGT-CAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
261 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
*
94854 TCAAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
326 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
* *
94919 ATAGATACTTTACAATATAAACACTACCTATTACATTATATAAACACTACCTATTACATTATATA
391 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
94984 AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
456 AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
*
95049 GATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTT
521 GATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTT
* * *
95114 CTACCTACAATATTAATTTAATAATTTCATTTATAGAAAAAATTATTTGATTGTTTTGATATTTT
586 CCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATT-TTTTGATATTTT
95179 ATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
650 ATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
*
95244 ATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACG
715 ATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACG
95309 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
780 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
95374 CAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
845 CAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
95439 TACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTA
910 TACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTA
95504 TTATA
975 TTATA
*
95509 -TGAAAGTGTCCATAC-TTTTATAAAAAGGATCGATATTTTTTTTTAAA-TTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGT
95571 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
66 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
95636 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
131 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
*
95701 TTAACCAAAGATAATAATAATTATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
196 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
95766 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
261 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
*
95831 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATG
326 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
* *
95896 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAATGTTACCTATTACATTATATA
391 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
*
95961 AGCGCTACCTATTACATTATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
456 AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
*
96026 TATCGA
521 GATCGA
96032 CACTTTATGC
Statistics
Matches: 2363, Mismatches: 86, Indels: 43
0.95 0.03 0.02
Matches are distributed among these distances:
957 52 0.02
958 14 0.01
959 296 0.13
961 3 0.00
963 1 0.00
964 2 0.00
974 1 0.00
975 2 0.00
976 313 0.13
977 671 0.28
978 441 0.19
979 249 0.11
980 120 0.05
981 62 0.03
982 136 0.06
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (979 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGT
TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
GATCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTT
CCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTTTTTGATATTTTA
TAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATA
TATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGC
CTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCAC
AGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATT
ACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTAT
TATA
Found at i:95457 original size:23 final size:23
Alignment explanation
Indices: 95422--95494 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
95412 ATACTTTACA
*
95422 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
95445 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
95468 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
95491 ATAT
1 ATAT
95495 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:95946 original size:23 final size:23
Alignment explanation
Indices: 95910--95982 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
95900 ATACTTTACA
* *
95910 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
95933 ATATAAATGTTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
95956 ATATAAGCGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
95979 ATAT
1 ATAT
95983 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:96294 original size:187 final size:188
Alignment explanation
Indices: 96065--97237 Score: 1002
Period size: 200 Copynumber: 6.0 Consensus size: 188
96055 GTTTTAATAT
* *
96065 TTCATTCTGGA-CAAAAATATCGACACAAACTAAAAAAGTGTCGATACATGATTTAGACCTATTC
1 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
* * * **
96129 TCTCATAAAACCGATATAATTATACCGGTTTCATTGA-ACATTATACTTATGGGTTTCGATGTTT
66 TCTCATAAAACCGGTATACTTGTACCGGTTAAATTGATACATTATACTTATGGGTTTCGATGTTT
*
96193 ATGGGATCGATACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCA
131 ATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCA
*
96251 TTCATTTTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
1 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
* *
96316 TCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTATATTATACTTATAG
66 TCTCATAAAACCGGTATACTTGTACCGGTTAAATTG----A-TA-C------ATTATACTTATGG
*
96381 GTTTCGATGTTTATCGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTT
119 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTT
96446 TGCCA
184 TGCCA
*
96451 TTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
1 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
* * * *
96516 TCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGA
66 TCTCATAAAACCGGTATACTTGTACCG----G-TT---AAATT---GA-TACATTATACTTATGG
*
96581 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
119 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTT
96646 TGCCA
184 TGCCA
* *
96651 TTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGACACATTATTTAGACCTATTC
1 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
*
96716 TCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATGG
66 TCTCATAAAACCGGTATACTTGTACC-G---G-TT---AAATT---GA-TACATTATACTTATGG
* * * * **
96781 GTTTCGATGTTTATGGGATCGACAC--TTTAT-TGT-TA-C-ACCCTGT-TTGCCATT-CATTCT
119 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTG---TTGCACCCT
96838 G---GACCA
181 GTTTG-CCA
*** * * * * * * ** *
96844 AAAATATC--GA-CACAAACT-T---CA-AAAGTGTCGATACATTATTTATACCTATTCTCTCAT
1 TTCAT-TCTGGACCA-AAAATATCGACACAAACT-AC-A-AAAGTGTCGATA-C-ATTAT-T--T
* * * * **** **
96901 AAAACCGGTATACT-T-GT---ACCGGT-TAGATTG-AAAAATT-ACCT-ATTACATTATACTTA
56 -AGACC--TATTCTCTCATAAAACCGGTATA-CTTGTACCGGTTAAATTGA-TACATTATACTTA
** * *
96957 TGGGTTTCGATGTTTATCCGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCAT
116 TGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCT
97022 GTTTGCCA
181 GTTTGCCA
*
97030 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTC
1 TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
* *
97095 TCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGG
66 TCTCATAAAACCGGTATACTTGTACCG----G-TT---AAATT---GA-TACATTATACTTATGG
* *
97160 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGTACCCTGTT
119 GTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTT
*
97225 TTCCA
184 TGCCA
97230 TTCATTCT
1 TTCATTCT
97238 CGCACATGAT
Statistics
Matches: 806, Mismatches: 98, Indels: 152
0.76 0.09 0.14
Matches are distributed among these distances:
179 41 0.05
181 10 0.01
182 3 0.00
183 9 0.01
184 6 0.01
185 7 0.01
186 28 0.03
187 102 0.13
188 7 0.01
189 8 0.01
190 7 0.01
191 8 0.01
192 20 0.02
193 18 0.02
194 7 0.01
195 7 0.01
196 10 0.01
197 3 0.00
198 10 0.01
200 482 0.60
201 1 0.00
204 1 0.00
205 2 0.00
206 1 0.00
207 4 0.00
208 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (188 bp):
TTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTC
TCTCATAAAACCGGTATACTTGTACCGGTTAAATTGATACATTATACTTATGGGTTTCGATGTTT
ATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCA
Found at i:96402 original size:200 final size:200
Alignment explanation
Indices: 96166--96808 Score: 1169
Period size: 200 Copynumber: 3.2 Consensus size: 200
96156 GTTTCATTGA
*
96166 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGATACTTTTTATATATGGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
*
96231 TTGTTGCACCCTGTTTGCCATTCATTTTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
96296 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
96361 CTATT
196 CTATT
* * *
96366 ATATTATACTTATAGGTTTCGATGTTTATCGGATCGACACTTTTTATATATGGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
* *
96431 TTGTTGCACCCTGTTTGCCATTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
* *
96496 TACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
96561 CTATT
196 CTATT
* *
96566 ACATTATACTTTTGAGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
*
96631 TGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
*
96696 CACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
96761 CTATT
196 CTATT
96766 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTT
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTT
96809 ATTGTTACAC
Statistics
Matches: 422, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
200 422 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (200 bp):
ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
CTATT
Found at i:96849 original size:379 final size:379
Alignment explanation
Indices: 96166--97187 Score: 1657
Period size: 379 Copynumber: 2.6 Consensus size: 379
96156 GTTTCATTGA
*
96166 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGATACTTTTTATATATGGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
*
96231 TTGTTGCACCCTGTTTGCCATTCATTTTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
96296 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
* *
96361 CTATTATATTATACTTATAGGTTTCGATGTTTATCGGATCGACACTTTTTATATATGGATCGACA
196 CTATTACATTATACTTAT--G----G--G-TT-TC-GAT-G-------TT-TAT-GGGATCGACA
*
96426 CTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGT
240 CTTTATTGTTACACCCTGTTTGCCATTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGT
*
96491 GTCGATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAAA
305 GTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAA
96556 ATTACCTATT
370 ATTACCTATT
* *
96566 ACATTATACTTTTGAGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
*
96631 TGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
*
96696 CACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
96761 CTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTATTGTTACACCCTGTTT
196 CTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTATTGTTACACCCTGTTT
* * *
96826 GCCATTCATTCTGGACCAAAAATATCGACACAAACTTCAAAAGTGTCGATACATTATTTATACCT
261 GCCATTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCT
*
96891 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATT
326 ATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
** *
96945 ACATTATACTTATGGGTTTCGATGTTTATCCGATCGACACTTTTTATATATAGATCGACACTTTA
1 ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
* *
97010 TTGTTGCACCATGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
66 TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
* *
97075 TACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTAC
131 TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
*
97140 CTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTT
196 CTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTT
97188 TTATATATGG
Statistics
Matches: 596, Mismatches: 26, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
379 374 0.63
380 3 0.01
381 2 0.00
388 1 0.00
389 3 0.01
390 2 0.00
391 2 0.00
392 1 0.00
394 1 0.00
398 1 0.00
400 206 0.35
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (379 bp):
ACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTA
TTGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGA
TACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTAC
CTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTATTGTTACACCCTGTTT
GCCATTCATTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCT
ATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATT
Found at i:96917 original size:179 final size:179
Alignment explanation
Indices: 96617--97187 Score: 746
Period size: 179 Copynumber: 3.1 Consensus size: 179
96607 TTTTATATAT
* * *
96617 GGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAAC
1 GGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
*
96682 TACAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTA
66 TACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTA
96747 GATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATG
131 GATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATG
96796 GGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
1 GGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
* *
96861 TTCAAAAGTGTCGATACATTATTTATACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTA
66 TACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTA
*
96926 GATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATC
131 GATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATG
* * ** * *****
96975 CGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCATGTTTGCCATTCATTCTGG
1 GGATCGACAC---TT-TAT-T-G-T-TACACCCT-GT-TTG--CCA---TT--CATTC-TGGACC
** * *
97040 ACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTCTCTCATAAAA
48 AAAAAT---ATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAA
* *
97105 CCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGGGTTTCGATGT
110 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
97170 TTATG
175 TTATG
97175 GGATCGACACTTT
1 GGATCGACACTTT
97188 TTATATATGG
Statistics
Matches: 344, Mismatches: 27, Indels: 25
0.87 0.07 0.06
Matches are distributed among these distances:
179 181 0.53
182 2 0.01
183 3 0.01
184 1 0.00
185 1 0.00
186 1 0.00
187 5 0.01
188 1 0.00
189 3 0.01
191 3 0.01
194 2 0.01
196 6 0.02
197 6 0.02
200 129 0.38
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (179 bp):
GGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
TACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTA
GATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATG
Found at i:97027 original size:579 final size:583
Alignment explanation
Indices: 96065--97235 Score: 1931
Period size: 579 Copynumber: 2.0 Consensus size: 583
96055 GTTTTAATAT
* *
96065 TTCATTCTGGACAAAAATATCGACACAAACTAAAAAAGTGTCGATACATGATTTAGACCTATTCT
1 TTCATTATGGACAAAAATATCGACACAAACTAAAAAAGTGTCGACACATGATTTAGACCTATTCT
* * * * *** **
96130 CTCATAAAACCGATATAATTATACCGGTTTCATTGAACATTATACTTATGGGTTTCGATGTTTAT
66 CTCATAAAACCGATATAATTATACCGGTTACATTGAAAAATATACCTATGACATTC-ATACTTAT
* * * *
96195 GGGATCGATACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTTTG
130 GGGATCGA-AC-TGTTATATAGGGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTG
96260 GACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAA
193 GACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAA
*
96325 ACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTATATTATACTTATAGGTTTCGATG
258 ACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATAGGTTTCGATG
* * *
96390 TTTATCGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCA
323 TTTATCCGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCATGTTTGCCATTCA
*
96455 TTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTC
388 TTCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTCTCTC
*
96520 ATAAAACTGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGAGTTT
453 ATAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGAGTTT
96585 CGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCC
518 CGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCC
96650 A
583 A
* *
96651 TTCATTATGGACCAAAAATATCGACACAAACTACAAAAGTGTCGACACATTATTTAGACCTATTC
1 TTCATTATGGA-CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATGATTTAGACCTATTC
* * * * *
96716 TCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAAT-TACCTATTACATT-ATACTTAT
65 TCTCATAAAACCGATATAATTATACCGGTTACATTGAAAAATATACCTATGACATTCATACTTAT
*
96779 GGGTTTCG-A-TGTT-TAT-GGGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGG
130 GGG-ATCGAACTGTTATATAGGGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGG
* *
96840 ACCAAAAATATCGACACAAACTTCAAAAGTGTCGATACATTATTTATACCTATTCTCTCATAAAA
194 ACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAA
*
96905 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
259 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATAGGTTTCGATGT
96970 TTATCCGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCATGTTTGCCATTCAT
324 TTATCCGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCATGTTTGCCATTCAT
*
97035 TCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTCTCTCA
389 TCTGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTCTCTCA
*
97100 TAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGGGTTTC
454 TAAAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGAGTTTC
* *
97165 GATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGTACCCTGTTTTCCA
519 GATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCA
97230 TTCATT
1 TTCATT
97236 CTCGCACATG
Statistics
Matches: 547, Mismatches: 36, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
579 425 0.78
580 3 0.01
581 3 0.01
583 1 0.00
584 9 0.02
585 3 0.01
586 18 0.03
587 85 0.16
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (583 bp):
TTCATTATGGACAAAAATATCGACACAAACTAAAAAAGTGTCGACACATGATTTAGACCTATTCT
CTCATAAAACCGATATAATTATACCGGTTACATTGAAAAATATACCTATGACATTCATACTTATG
GGATCGAACTGTTATATAGGGATCGACACTTTATTGTTACACCCTGTTTGCCATTCATTCTGGAC
CAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACC
GGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTTATAGGTTTCGATGTTT
ATCCGATCGACACTTTTTATATATAGATCGACACTTTATTGTTGCACCATGTTTGCCATTCATTC
TGGACAAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACATATTCTCTCATA
AAACCGGTATACTTGTACCGATTAGATTGAAAAATTACCTATTACATTATACTTTTGAGTTTCGA
TGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCA
Found at i:97416 original size:19 final size:19
Alignment explanation
Indices: 97388--97436 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
97378 TTATATTCAC
97388 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
* *
97407 ATATAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
97426 ATACAAAATTA
1 ATACAAAATTA
97437 ACCCTACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:99263 original size:32 final size:32
Alignment explanation
Indices: 99221--99281 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
99211 TTAATATCAC
*
99221 CCCTTAACACCCCAACTTCTTTCACCACTTCA
1 CCCTCAACACCCCAACTTCTTTCACCACTTCA
* *
99253 CCCTCAACACCTCTACTTCTTTCACCACT
1 CCCTCAACACCCCAACTTCTTTCACCACT
99282 CCATCTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.30
Consensus pattern (32 bp):
CCCTCAACACCCCAACTTCTTTCACCACTTCA
Found at i:99340 original size:21 final size:21
Alignment explanation
Indices: 99315--99379 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
99305 CCCCTTATAC
* *
99315 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
99336 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
99357 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
99378 CT
1 CT
99380 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:101659 original size:20 final size:19
Alignment explanation
Indices: 101604--101650 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
101594 TCCGGTATCG
101604 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
101623 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
101644 TTTTACC
1 TTTTACC
101651 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:101831 original size:20 final size:19
Alignment explanation
Indices: 101785--101831 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
101775 TCCGGTAACG
101785 TTTTACCGATTTTATCATT
1 TTTTACCGATTTTATCATT
* *
101804 TTGATACCGGTTTTATCATAT
1 TT-TTACCGATTTTATCAT-T
101825 TTTTACC
1 TTTTACC
101832 TGGTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (19 bp):
TTTTACCGATTTTATCATT
Found at i:101894 original size:181 final size:181
Alignment explanation
Indices: 101571--102045 Score: 709
Period size: 181 Copynumber: 2.6 Consensus size: 181
101561 CGTACTTGCG
*
101571 AAAGTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * * *
101636 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATTTTTTTTTAAAGTATCGACACACTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATA-CTTTTTTAAAAGTATCAACACACTAT
* *
101701 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
130 AGGAGCTAAAACTGCTTATCTTTTAAATTCACAAAGTGTCGATCCTTATATT
*
101752 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGATTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* **
101817 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCAACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATAC-TTTTTTAAAAGTATCAACACACTAT
** *
101882 AGGATTTAAAACTGCTTATCTTTTAAATTCACGAAGTGTCGATCCTTATATT
130 AGGAGCTAAAACTGCTTATCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * **
101934 AAAGTACCGACACTTTAAATATATCCGATAGCGCTTTACCGGTTTTATCATTTCAATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
101999 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACTTTTTTAA
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACTTTTTTAA
102046 TTTGGATCGA
Statistics
Matches: 266, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
181 173 0.65
182 93 0.35
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (181 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACTTTTTTAAAAGTATCAACACACTATA
GGAGCTAAAACTGCTTATCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:102212 original size:11 final size:11
Alignment explanation
Indices: 102196--102221 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
102186 TATCCGATAA
102196 AACCGTATATT
1 AACCGTATATT
102207 AACCGTATATT
1 AACCGTATATT
102218 AACC
1 AACC
102222 CACAATCCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (11 bp):
AACCGTATATT
Found at i:103569 original size:16 final size:16
Alignment explanation
Indices: 103548--103578 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103538 ATTTTGAACC
103548 GAATTAACCATTAACT
1 GAATTAACCATTAACT
*
103564 GAATTAACCGTTAAC
1 GAATTAACCATTAAC
103579 CGACTATTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (16 bp):
GAATTAACCATTAACT
Found at i:104144 original size:182 final size:182
Alignment explanation
Indices: 103936--104595 Score: 970
Period size: 182 Copynumber: 3.6 Consensus size: 182
103926 GATCCAAATA
* * *
103936 AAAAATGTATCGATCCATATCAATATAACAGGTAAAAATATGAAAAAATCGGT-T-TAATTATGA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAAAAAACCGGTCTCGAA--ATGA
* * * *
103999 CAAAACCGGTAAAGCGCTATCGGATATGTTGAAAGTGTCGATTAGATTGAA-ATAAGTATCGAC-
64 CAAAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGA-TA-CTTTAATATAAGTATCGACA
* *
104062 CTTTGGAAATTTAAAAGAGAAGCCGTAATAGCGCCTATAAAGTGTCGATACTTTAT
127 CTTTGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* ** *
104118 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATAAAAAAATTGGTCTCGAAAAGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAAAAAACCGGTCTCGAAATGACA
* * * *
104183 AAATCGGTAAAGCACTACCGAATATATTGAAAGTGACGATACTTTAATATAAGTATCGACACTTT
66 AAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* *
104248 GGGAATTTAAAAGAGAAGCAATAATAGTGCCTATAAAGTGTCGATACTTTAT
131 GGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
** * *
104300 AAAAATGTATCGATCCATAATGATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAAAAAACCGGTCTCGAAATGACA
* *
104365 AAACTGATAAAGCGCTA-CTGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
66 AAACCGGTAAAGCGCTATC-GAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
104429 TGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
130 TGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* * * *
104482 AAAAATGTATCGATCCATAACGATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGATA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAAAAAACCGGTCTCGAAATGACA
*
104547 AAACCGGTGAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATA
66 AAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATA
104596 AGTACGCGTC
Statistics
Matches: 434, Mismatches: 38, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
180 4 0.01
181 15 0.03
182 411 0.95
183 2 0.00
184 2 0.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAAAAAACCGGTCTCGAAATGACA
AAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
GGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
Found at i:106595 original size:22 final size:24
Alignment explanation
Indices: 106551--106599 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
106541 TTTATTTTTA
*
106551 ATATAAAATGATAGTATAGTTATT
1 ATATAAAATGATAGAATAGTTATT
*
106575 ATATAAAATGATA-AAT-TTTATT
1 ATATAAAATGATAGAATAGTTATT
106597 ATA
1 ATA
106600 AATACAGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 8 0.35
23 2 0.09
24 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (24 bp):
ATATAAAATGATAGAATAGTTATT
Found at i:107099 original size:33 final size:33
Alignment explanation
Indices: 107055--107121 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
107045 AAATAGATGG
*
107055 AGTGGTGAAAGAAGTTGAGGTATTGAGGGGTGA
1 AGTGGTAAAAGAAGTTGAGGTATTGAGGGGTGA
*
107088 AGTGGTAAAAGAAGTTGAGGTGTTGAGGGGTGA
1 AGTGGTAAAAGAAGTTGAGGTATTGAGGGGTGA
107121 A
1 A
107122 CTTAAGATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTAAAAGAAGTTGAGGTATTGAGGGGTGA
Found at i:107293 original size:18 final size:18
Alignment explanation
Indices: 107270--107308 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
107260 GAAAAAATAT
107270 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
107288 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
107306 GAA
1 GAA
107309 ATGAGGAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:108889 original size:19 final size:19
Alignment explanation
Indices: 108865--108909 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
108855 TAGGGTTAAT
108865 TTTGTATAAGATTTATAAA
1 TTTGTATAAGATTTATAAA
* *
108884 TTTGTATACGATTTATAAT
1 TTTGTATAAGATTTATAAA
108903 TTTGTAT
1 TTTGTAT
108910 GTGAATGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATAAGATTTATAAA
Found at i:109802 original size:190 final size:193
Alignment explanation
Indices: 109358--110113 Score: 916
Period size: 201 Copynumber: 3.8 Consensus size: 193
109348 GTAAACATAT
*
109358 GTGTCGATACATTTATAAAACGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * *
109423 GGTAATTTTTCAATATAACCGGTATAAATATACCGGTTTTATGTGAAAACATGTCTACATAATGT
66 GGTAATTTTTCAA-CT-A----TAT-AATATA-CGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
109488 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACG
123 ATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACA
109553 CATAAA
188 CATAAA
* *
109559 GTGTCGATACATTTATGAAAAGTATCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
*
109624 GGTAATTTTTCAA-T-T-T-A-AT-CGGTATATAAGAGAGAATAGGTCTACATAATGTATCGACA
66 GGTAATTTTTCAACTATATAATATACGGT-TTTAAGAGAGAATAGGTCTACATAATGTATCGACA
* * * *
109683 CTTTTTAAGTTTGTGTCGATATTTTTTTTGTCTAGAATTAATGCCCAAACTAGGTGCACACATAA
130 CTTTTTAAATTTGTGTCGATA--CTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACACATAA
109748 A
193 A
*
109749 GTGTCGATACATTTATAAAAAGTATCGATCCCAAGAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
109814 GGTAATTTTTCAATGTAACCAATATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATAT
66 GGTAATTTTTC-----AA-CTATAT-AATATA-CGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
109879 ATCGACACTTTTTAAATTTGTGTCGATACTTTTCGTCCAGAATGAATGCCTAAACTAGGTGCA-A
123 ATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACA
109943 GCATAAA
188 -CATAAA
* * * *
109950 GTGTCGATACATTTATAAAAAATATCGATCCCAAAAACATCAAAACCGATAATTAAAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
** * *
110015 CTTAAATTTCCAATGT-AACTGGTATAAATATACCGGTTTTAAGAGAGAATAGGTATACATAATG
66 GGT-AATTT----T-TCAACT-ATAT-AATATA-CGGTTTTAAGAGAGAATAGGTCTACATAATG
*
110079 TATCGACACTTTTTAAATTTGTGTCGATATTTTTT
122 TATCGACACTTTTTAAATTTGTGTCGATACTTTTT
110114 TTTTAAATTT
Statistics
Matches: 490, Mismatches: 40, Indels: 50
0.84 0.07 0.09
Matches are distributed among these distances:
187 4 0.01
188 50 0.10
189 2 0.00
190 113 0.23
192 1 0.00
193 1 0.00
195 2 0.00
198 1 0.00
199 2 0.00
200 2 0.00
201 247 0.50
202 7 0.01
203 52 0.11
204 4 0.01
206 1 0.00
207 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (193 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTTCAACTATATAATATACGGTTTTAAGAGAGAATAGGTCTACATAATGTATCGACAC
TTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACACATAAA
Found at i:110438 original size:15 final size:15
Alignment explanation
Indices: 110418--110446 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
110408 ATCTTTCTCA
110418 AAGCTCTTCTCAACC
1 AAGCTCTTCTCAACC
110433 AAGCTCTTCTCAAC
1 AAGCTCTTCTCAAC
110447 AAAAACCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.38, G:0.07, T:0.28
Consensus pattern (15 bp):
AAGCTCTTCTCAACC
Found at i:111643 original size:6 final size:6
Alignment explanation
Indices: 111606--111639 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
111596 CAATCGGTCA
* *
111606 ATGAAG ATGACG ATGAAG ATGAAG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
111640 TGATCCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:112973 original size:18 final size:18
Alignment explanation
Indices: 112952--112988 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
112942 GTAATTGGAG
112952 TTTGAGTTTAAATTTCAA
1 TTTGAGTTTAAATTTCAA
*
112970 TTTGAGTTTGAATTTCAA
1 TTTGAGTTTAAATTTCAA
112988 T
1 T
112989 ATAAATTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (18 bp):
TTTGAGTTTAAATTTCAA
Found at i:112995 original size:24 final size:24
Alignment explanation
Indices: 112944--112996 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
112934 TTTCATATGT
* * * *
112944 AATTGGAGTTTGAGTTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
*
112968 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTAAATATA
112992 AATTT
1 AATTT
112997 CGGCTCCACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:117339 original size:198 final size:200
Alignment explanation
Indices: 116628--117820 Score: 1566
Period size: 198 Copynumber: 6.0 Consensus size: 200
116618 TTAAGTAATA
* * * *
116628 TCCAGAATGAATGTCCAACCGAGGTACACAAATAAAGTGTCGATACATTTATTAAAAGTATTGAT
1 TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGAT
* * *
116693 CCCAAAAACACCGAATAAGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAGATAT
66 CCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAAT
* * * *
116758 ATATCGGTTAATTAGAAAATAGGTCTACATAATATATCGACACTTTTTAAA-TTATGACGATACT
131 ATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACT
116822 TTTTG
196 TTTTG
* * *
116827 TCCAGAATGAATGACCAACCGAGGTGCACGAATAAAGTGTCGATATATTTATAAAAAGTATTGAT
1 TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGAT
* * * * * *
116892 CCTAAAAACATCGAATAAGATAATTATAATGTAATAGATCAATTTCCAATGTAATCGATAAAAAT
66 CCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAAT
* * *
116957 ATACGGGTTAATTAGAAAATAGGTTTACATAATGTATCGACACTTTTTAAATTTGTGTGGATACT
131 ATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACT
117022 TTTTG
196 TTTTG
* * * *
117027 TCCAGAATAAATGACTAACCGAGGTGCACGAATAAAGTGTCGATACATTTATAAAAAGTATCAAT
1 TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGAT
* *
117092 CCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTCAATTTCCAATGTAACCGTTAGAAAT
66 CCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAAT
* *
117157 ATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACATTTTTTAAATTTGTGTCGATACG
131 ATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACT
117222 TTTTG
196 TTTTG
* *
117227 AT-CAGAATGAATG-CCAA-CGAGGTGCACAAATAAAGTGTCAATACATTTATAAAACGTATCGA
1 -TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGA
* * * *
117289 TCCCAAAAACATCGAA-ACTGATAAATATAATGTAATAGCTAAATTTCCAATGTAACCGTTAGAA
65 TCCCAAAAACATCGAATA-AGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAA
* * * * **
117353 ATATACCGGTTAATTAGAGAATAGCTCTACATCATGTATCGACACTTGTGGAATTTGTGTCGATA
129 ATATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATA
117418 CTTTTTG
194 CTTTTTG
** * **
117425 TCCAGAATGAATG-CCTAAAGGA-GTGCACACATAAAGTGTCGATACATTTA-AAATTGTATCGA
1 TCCAGAATGAATGACC-AACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGA
* * * *
117487 TCCCAAAAACATC-AA-AACCGATAATTATAATGTAATAGGTAACTTTACAATATAACCAGTAGA
65 TCCCAAAAACATCGAATAA--GATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGA
* * * *
117550 AATATACCGCTTAATTAGAAAATAAGTATACATAATGTAACGACACTTTTTAAATTTGTGTCGAT
128 AATATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGAT
*
117615 ACGTTTTG
193 ACTTTTTG
* * * * * * * * *
117623 ACTAGAAGGAATGCCCAA-CGGGGTGTACGAATAAAGTGTCGATACATTTATAAAATGTATCAAT
1 TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGAT
* * * * *
117687 CCCATAAACAT--AAAAACCGATAAATATAATGTAATAGGTAAATTTTCAATGTAAACGGTAGAA
66 CCCAAAAACATCGAATAA--GATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAA
* * *
117750 ATATACCGGTTAATTAGAAAATAAGTCTACATAATGTATCAACACTTTTTAAAGTTGTGTCGATA
129 ATATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATA
117815 CTTTTT
194 CTTTTT
117821 TAAATTACGC
Statistics
Matches: 881, Mismatches: 101, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
197 6 0.01
198 337 0.38
199 325 0.37
200 212 0.24
201 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (200 bp):
TCCAGAATGAATGACCAACCGAGGTGCACAAATAAAGTGTCGATACATTTATAAAAAGTATCGAT
CCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAAT
ATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACT
TTTTG
Found at i:119406 original size:19 final size:19
Alignment explanation
Indices: 119382--119429 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
119372 ATATAGGGGA
119382 AATTTTGTATACGATTCAT
1 AATTTTGTATACGATTCAT
*
119401 AATTTTGTATACGATTTAT
1 AATTTTGTATACGATTCAT
119420 AATTTTGTAT
1 AATTTTGTAT
119430 GTGAATGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (19 bp):
AATTTTGTATACGATTCAT
Found at i:121009 original size:58 final size:59
Alignment explanation
Indices: 120926--121129 Score: 222
Period size: 58 Copynumber: 3.5 Consensus size: 59
120916 ATGACACTTT
* *
120926 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTGA
1 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTAA
* *** * *
120985 GTGTGCT-AAATGATAAGGAAATCATATTGAAAATATGGATTTCCGGATA-GG-GCATTTTA
1 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCC--ATATGGAGCA-CTAA
* * **
121044 -TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCATATAAAGCACTAA
1 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTAA
121102 G-GTGCTACAAA-GATAAGGAAATCATACT
1 GTGTGCTA-AAATGATAAGGAAATCATACT
121130 AATGATATGA
Statistics
Matches: 118, Mismatches: 19, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
57 3 0.03
58 64 0.54
59 48 0.41
60 3 0.03
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (59 bp):
GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTAA
Found at i:121138 original size:117 final size:117
Alignment explanation
Indices: 120927--121176 Score: 351
Period size: 117 Copynumber: 2.1 Consensus size: 117
120917 TGACACTTTG
* ** *
120927 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTGAGTGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATAAAGCACTAAGTGTGCT
* * * **
120992 AAATGATAAGGAAATCATATTGAAAATATGGATTTCCGGATAGGGCATTTTA
66 AAAAGATAAGGAAATCATACTGAAAATATGAATTTCCACATAGGGCATTTTA
* *
121044 TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCATATAAAGCACTAAG-GTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATAAAGCACTAAGTGTGCT
* *
121108 ACAAAGATAAGGAAATCATACT-AATGATATGAATTTTCACATAGGGCATTTTA
66 A-AAAGATAAGGAAATCATACTGAA-AATATGAATTTCCACATAGGGCATTTTA
121161 TGTGCTAAAATGGTAA
1 TGTGCTAAAATGGTAA
121177 CAAGATCATA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
116 8 0.07
117 110 0.93
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (117 bp):
TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATAAAGCACTAAGTGTGCT
AAAAGATAAGGAAATCATACTGAAAATATGAATTTCCACATAGGGCATTTTA
Found at i:123451 original size:9 final size:9
Alignment explanation
Indices: 123437--123461 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
123427 AAAGACTAAA
123437 GATGATCGG
1 GATGATCGG
123446 GATGATCGG
1 GATGATCGG
123455 GATGATC
1 GATGATC
123462 CGGAGATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (9 bp):
GATGATCGG
Found at i:137738 original size:59 final size:59
Alignment explanation
Indices: 137675--137937 Score: 281
Period size: 58 Copynumber: 4.5 Consensus size: 59
137665 ATGGCACTTT
137675 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAACACTGA
1 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAACACTGA
*
137734 GTGTGCT-AAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTGA
1 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAACACTGA
* * * * *
137792 GTGTGCT-AAATGATAAGGAAATCATATTGAAAT-TATGGATTTCCAGATATGG--CATTTTA
1 GTGTGCTAAAATGATAAGGAAATCATACTG-AGTGTATAGATTTCC--ATATGGAACA-CTGA
* * * * ** * *
137851 -TGTACTAAAATGGTAAAGG-AATCATACTGAGTGTATGGATTTCCAGATAAAATACTAA
1 GTGTGCTAAAATGAT-AAGGAAATCATACTGAGTGTATAGATTTCCATATGGAACACTGA
*
137909 GGGTGCTACAAA-GATAAGGAAATCATACT
1 GTGTGCTA-AAATGATAAGGAAATCATACT
137938 AATGATATGA
Statistics
Matches: 173, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
57 3 0.02
58 103 0.60
59 54 0.31
60 13 0.08
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (59 bp):
GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAACACTGA
Found at i:137765 original size:30 final size:30
Alignment explanation
Indices: 137675--137767 Score: 79
Period size: 30 Copynumber: 3.1 Consensus size: 30
137665 ATGGCACTTT
137675 GTGTGCTAAAATGATAAGGAAATCATACTGA
1 GTGTGCT-AAATGATAAGGAAATCATACTGA
* * * *
137706 GTGT-ATAGATTTCCATATGG-AA-C--ACTGA
1 GTGTGCTA-A-AT-GATAAGGAAATCATACTGA
137734 GTGTGCTAAATGATAAGGAAATCATACTGA
1 GTGTGCTAAATGATAAGGAAATCATACTGA
137764 GTGT
1 GTGT
137768 ATAGATTTCC
Statistics
Matches: 46, Mismatches: 8, Indels: 17
0.65 0.11 0.24
Matches are distributed among these distances:
26 5 0.11
27 3 0.07
28 11 0.24
29 3 0.07
30 12 0.26
31 7 0.15
32 5 0.11
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (30 bp):
GTGTGCTAAATGATAAGGAAATCATACTGA
Found at i:137977 original size:118 final size:118
Alignment explanation
Indices: 137735--137996 Score: 295
Period size: 118 Copynumber: 2.2 Consensus size: 118
137725 GAACACTGAG
* * ** * * *
137735 TGTGCT-AAATGAT-AAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTGAGTGTGC
1 TGTGCTAAAATGGTAAAGGAAATCATACTGAGTGTATAGATTTCCAGATAAAACACTAAGGGTGC
* * * * *
137798 TAAATGATAAGGAAATCATATTGAAATTATGGATTTCCAGATATGGCATTTTA
66 TAAAAGATAAGGAAATCATACTGAAATTATGAATTTCCACATAGGGCATTTTA
* * *
137851 TGTACTAAAATGGTAAAGG-AATCATACTGAGTGTATGGATTTCCAGATAAAATACTAAGGGTGC
1 TGTGCTAAAATGGTAAAGGAAATCATACTGAGTGTATAGATTTCCAGATAAAACACTAAGGGTGC
*
137915 TACAAAGATAAGGAAATCATACT--AATGATATGAATTTTCACATAGGGCATTTTA
66 TA-AAAGATAAGGAAATCATACTGAAAT--TATGAATTTCCACATAGGGCATTTTA
137969 TGTGCTAAAATGGTAACA--AAATCATACT
1 TGTGCTAAAATGGTAA-AGGAAATCATACT
137997 AATGGTATGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
116 8 0.07
117 45 0.37
118 68 0.56
119 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (118 bp):
TGTGCTAAAATGGTAAAGGAAATCATACTGAGTGTATAGATTTCCAGATAAAACACTAAGGGTGC
TAAAAGATAAGGAAATCATACTGAAATTATGAATTTCCACATAGGGCATTTTA
Found at i:138032 original size:59 final size:59
Alignment explanation
Indices: 137928--138039 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 59
137918 AAAGATAAGG
* *
137928 AAATCATACTAATGATATGAATTTTCACATAGGGCATTTTATGTGCTAAAATGGTAACA
1 AAATCATACTAATGATATGAATTTTCACATAAGGCACTTTATGTGCTAAAATGGTAACA
* * *
137987 AAATCATACTAATGGTATGAATTTTTTA-ATAAGGCACTTTGTGTGCTAAAATG
1 AAATCATACTAATGATATGAA-TTTTCACATAAGGCACTTTATGTGCTAAAATG
138040 AAAGGGAAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
59 42 0.89
60 5 0.11
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (59 bp):
AAATCATACTAATGATATGAATTTTCACATAAGGCACTTTATGTGCTAAAATGGTAACA
Found at i:138226 original size:17 final size:18
Alignment explanation
Indices: 138201--138234 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
138191 ATTGTAGTAT
138201 ATTCATTGGA-ATTAAAG
1 ATTCATTGGAGATTAAAG
*
138218 ATTCCTTGGAGATTAAA
1 ATTCATTGGAGATTAAA
138235 TATCAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (18 bp):
ATTCATTGGAGATTAAAG
Found at i:138566 original size:11 final size:11
Alignment explanation
Indices: 138546--138605 Score: 84
Period size: 11 Copynumber: 5.5 Consensus size: 11
138536 CCGAAGTTTC
* *
138546 TGTAGCAGTAG
1 TGTAGTAGTAA
138557 TGTAGTAGTAA
1 TGTAGTAGTAA
*
138568 TGTAGTAGTAC
1 TGTAGTAGTAA
*
138579 TGTAGTAGTAC
1 TGTAGTAGTAA
138590 TGTAGTAGTAA
1 TGTAGTAGTAA
138601 TGTAG
1 TGTAG
138606 CAGTGCATCG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 45 1.00
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (11 bp):
TGTAGTAGTAA
Found at i:141697 original size:200 final size:200
Alignment explanation
Indices: 141310--141789 Score: 655
Period size: 200 Copynumber: 2.4 Consensus size: 200
141300 GTAAAAAGAT
* * * *
141310 GTGTCGATACATTT-TCTAAAAGTATCGACCCCAAAAACATCAAAACCAATAATTATAATGTAAT
1 GTGTCGATACATTTAT-TAAAAGTATCGATCTCAAAAACATCGAAACCGATAATTATAATGTAAT
* *
141374 AGGTAAA-TTAAAATTGTAACTGGTATAAATATACTGGTTAATTACAAAACAGGTAAACATAATG
65 AGGTAAATTTACAA-TGTAACTGGTATAAATATACTGGTTAATGACAAAACAGGTAAACATAATG
* *
141438 TATCAACACTTGTGGAATTTGTGTCGATACTTATTGTCCAAAATGAATGCCCAAACGAGGTGCAC
129 TATCAACACTTGTGAAATATGTGTCGATACTTATTGTCCAAAATGAATGCCCAAACGAGGTGCAC
141503 GCATAAA
194 GCATAAA
* *
141510 GTGTCGATACATTTATTAAAAGTATCGATCTCAAAAACATTGAAACCGATAATTATGATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCTCAAAAACATCGAAACCGATAATTATAATGTAATA
* * * * * *
141575 GGTAAATTTACAATGTAACTGGTATAAATATATTGGTTTTATGAGAAAATATGTCAACATAATGT
66 GGTAAATTTACAATGTAACTGGTATAAATATACTGG-TTAATGACAAAACAGGTAAACATAATGT
* * * * * *
141640 ATCAACACTTTTTAAATATGTGTCGATATTTTTTTTCCAGAATGAATGCCC-AACGAGGTGCACG
130 ATCAACACTTGTGAAATATGTGTCGATACTTATTGTCCAAAATGAATGCCCAAACGAGGTGCACG
141704 CATAAA
195 CATAAA
* * *
141710 GTGTCGATACATTTA--AAATTGTATCGATCTCAAAAATATCGAAACCGATAATTATAATGTATT
1 GTGTCGATACATTTATTAAA-AGTATCGATCTCAAAAACATCGAAACCGATAATTATAATGTAAT
*
141773 AGGTAAATTTGCAATGT
65 AGGTAAATTTACAATGT
141790 TATCGGCATA
Statistics
Matches: 248, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
198 3 0.01
199 55 0.22
200 119 0.48
201 71 0.29
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (200 bp):
GTGTCGATACATTTATTAAAAGTATCGATCTCAAAAACATCGAAACCGATAATTATAATGTAATA
GGTAAATTTACAATGTAACTGGTATAAATATACTGGTTAATGACAAAACAGGTAAACATAATGTA
TCAACACTTGTGAAATATGTGTCGATACTTATTGTCCAAAATGAATGCCCAAACGAGGTGCACGC
ATAAA
Found at i:142349 original size:29 final size:29
Alignment explanation
Indices: 142315--142381 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
142305 TGCTATGTTA
* **
142315 TTTATTTCAAATTAACTGCTAACTTTTAT
1 TTTATTGCAAATTAACCACTAACTTTTAT
* *
142344 TTTATTGCACATTAACCACTGACTTTTAT
1 TTTATTGCAAATTAACCACTAACTTTTAT
*
142373 TTTTTTGCA
1 TTTATTGCA
142382 TTCTAACCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (29 bp):
TTTATTGCAAATTAACCACTAACTTTTAT
Found at i:142503 original size:5 final size:5
Alignment explanation
Indices: 142493--142521 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
142483 ACCACTAACT
142493 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
142522 TATATTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:142715 original size:123 final size:123
Alignment explanation
Indices: 142422--142715 Score: 423
Period size: 123 Copynumber: 2.4 Consensus size: 123
142412 CTCTTATTAC
* *** * * *
142422 TCGATCTTGTGGTGACCCGATCCGATTTAAGATCCACATTATTATGGATCGGACTCTTCTAACCA
1 TCGACCTTGTGGTGACCCGATCCGGGATAAGATCCACATTATTATGGTTCGGACTATGCTAACCA
* *
142487 CTAACTTTTTATTTTATTTTATTTTATTTTATTTTTATATTTGTTTGCATTATTCTAT
66 CTAACTTTTTATTTTATTTTATTTCATTTTATTTTTATATTTGTTTGCATTATTCGAT
**
142545 TCGACCTTGTGGTGACCCGATCCGGGATAAGATATACATTATTATGGTTCGGACTATGCTAACCA
1 TCGACCTTGTGGTGACCCGATCCGGGATAAGATCCACATTATTATGGTTCGGACTATGCTAACCA
142610 -TAAACTTTTTTATTTTA-TTTATTTCATTTTATTTTTATATTTGTTTGCATTATTCGAT
66 CT-AAC-TTTTTATTTTATTTTATTTCATTTTATTTTTATATTTGTTTGCATTATTCGAT
* *
142668 TCGACCTTTTGGTGACTCGATCCAGGG-TAAGATCCACATTATTATGGT
1 TCGACCTTGTGGTGACCCGATCC-GGGATAAGATCCACATTATTATGGT
142716 CCAGACTCGG
Statistics
Matches: 153, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
122 1 0.01
123 138 0.90
124 14 0.09
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46
Consensus pattern (123 bp):
TCGACCTTGTGGTGACCCGATCCGGGATAAGATCCACATTATTATGGTTCGGACTATGCTAACCA
CTAACTTTTTATTTTATTTTATTTCATTTTATTTTTATATTTGTTTGCATTATTCGAT
Found at i:142829 original size:45 final size:44
Alignment explanation
Indices: 142763--142850 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
142753 ACATTCTAAC
*
142763 TTTTATTTTATTGTTCATACTAA-TATACTGACTTTTTATTTTAT
1 TTTTATTTTATTGTTCATACTAACT-TACTAACTTTTTATTTTAT
*
142807 TTTTATTTTTATTGTTCTTACTAACTTACTAACTTTTTATTTTA
1 TTTTA-TTTTATTGTTCATACTAACTTACTAACTTTTTATTTTA
142851 CTGCACAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
44 5 0.12
45 34 0.85
46 1 0.03
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.62
Consensus pattern (44 bp):
TTTTATTTTATTGTTCATACTAACTTACTAACTTTTTATTTTAT
Found at i:143642 original size:24 final size:26
Alignment explanation
Indices: 143587--143647 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 26
143577 TGTTTTACAT
*
143587 TTTTA-TTTTATTATTTTTAATCTCG
1 TTTTATTTTTATTATTTTTAATCTCA
* *
143612 TTCTATTTTTATT-TTTTT-ATTTCA
1 TTTTATTTTTATTATTTTTAATCTCA
143636 TTTTATTTTTAT
1 TTTTATTTTTAT
143648 CTTTGACATC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 15 0.48
25 9 0.29
26 7 0.23
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTTATTTTTATTATTTTTAATCTCA
Found at i:144613 original size:116 final size:118
Alignment explanation
Indices: 144426--144657 Score: 290
Period size: 117 Copynumber: 2.0 Consensus size: 118
144416 TAGGGTTTTC
* * ** *
144426 AATTTTTTATATTTATAATTAGATCTCTTAATATTTATAATCTCATAATTTTTTTAGTTTTTGAC
1 AATTTTTTATATTTATAATTAGAGCTCCTAATATTTATAATCTCATAAAATGTTTAGTTTTTGAC
**
144491 CATCTTTTT-CATTTCACTTATTAATTCATCCAAATTTAAATTAAATTTAACA
66 CATCTTTTTCCATTTCACCCATTAATTCATCCAAATTTAAATTAAATTTAACA
* * * *
144543 AATTTTTTATATTTATGATTAGGGC-CCTAATTTTTATAATTTCATAAAATGTTTAGTTTTTGAC
1 AATTTTTTATATTTATAATTAGAGCTCCTAATATTTATAATCTCATAAAATGTTTAGTTTTTGAC
* * * * *
144607 GC-TCTTTTTCCATTTCCCCCATTTATTCATTCAATTTTGAATTAAATTTAA
66 -CATCTTTTTCCATTTCACCCATTAATTCATCCAAATTTAAATTAAATTTAA
144658 TCATGTTTTT
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
116 40 0.41
117 57 0.59
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (118 bp):
AATTTTTTATATTTATAATTAGAGCTCCTAATATTTATAATCTCATAAAATGTTTAGTTTTTGAC
CATCTTTTTCCATTTCACCCATTAATTCATCCAAATTTAAATTAAATTTAACA
Found at i:148622 original size:31 final size:30
Alignment explanation
Indices: 148584--148691 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 30
148574 CCCGAAGGAC
*
148584 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAG-ACATAGGTAAA
*
148615 CAGTCCATATGTCCCGACGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGACATAGGTAAA
* *
148645 C-GTCTATATGTCCCAAAGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGACATAGGTAAA
* *
148674 -AATCCATATGTCTCGAAG
1 CAGTCCATATGTCCCGAAG
148692 GACCACATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
29 38 0.58
30 11 0.17
31 16 0.24
32 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (30 bp):
CAGTCCATATGTCCCGAAGACATAGGTAAA
Found at i:149605 original size:64 final size:63
Alignment explanation
Indices: 149452--149607 Score: 158
Period size: 64 Copynumber: 2.5 Consensus size: 63
149442 CAATAAGGGT
* * **
149452 ATGCATCGATGCACTA-CTGATGCATCGGTGCATAAATACATTCGATGTTGTATTATTATTGAG
1 ATGCATCGATGCACTACCTG-TGCATCGATGCATAAATACATTCGATGTTCTATTATTAAAGAG
* * * * *
149515 ATGCATCGATGCA-TGCCTTATTCATCGATGCACTAATTGCATTCGATGTTTCTATT-TTAAA-A
1 ATGCATCGATGCACTACC-TGTGCATCGATGCA-TAAATACATTCGATG-TTCTATTATTAAAGA
149577 G
63 G
149578 AGTGCATCGATGCACTACCTGTGCATCGAT
1 A-TGCATCGATGCACTACCTGTGCATCGAT
149608 ACACCTTCAA
Statistics
Matches: 75, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 27 0.36
64 38 0.51
65 9 0.12
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (63 bp):
ATGCATCGATGCACTACCTGTGCATCGATGCATAAATACATTCGATGTTCTATTATTAAAGAG
Done.