genome.fa.s2130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002130.1 Hibiscus syriacus cultivar Beakdansim tig00004359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74800

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3939--4047	2	55.0	2	94	5	195	49	0	0	49	1.07
4989--5057	18	3.8	18	75	5	68	21	21	28	27	1.99
5007--5074	18	3.7	18	79	14	84	20	19	30	29	1.97
4990--5075	38	2.4	35	84	7	118	23	19	29	27	1.98
8537--8596	31	1.9	31	90	6	95	41	5	10	43	1.60
9041--9089	18	2.6	19	78	18	57	63	0	0	36	0.95
9075--9126	20	2.6	20	84	6	61	57	0	1	40	1.10
9098--9252	64	2.5	62	86	10	226	56	1	0	41	1.12
9161--9318	23	5.9	28	71	22	110	56	1	0	41	1.10
9215--9274	21	2.9	20	76	13	59	60	3	0	36	1.14
9160--9365	84	2.5	85	87	9	295	55	1	0	42	1.11
9089--9427	147	2.3	142	87	9	467	54	1	0	43	1.13
9245--9460	58	3.5	61	88	11	327	56	1	0	41	1.10
9416--9468	12	4.3	12	77	17	56	66	1	0	32	1.03
9832--9892	32	1.9	32	86	6	88	34	18	19	27	1.95
10876--11037	64	2.5	63	79	4	164	27	23	18	30	1.98
21658--21690	15	2.1	17	88	11	52	54	0	6	39	1.25
23110--23154	22	2.0	23	82	4	56	37	13	6	42	1.70
26349--26396	12	3.9	12	83	2	60	25	18	0	56	1.42
26448--26545	19	5.2	19	83	0	97	30	18	7	43	1.77
31880--31923	12	3.6	12	81	3	52	29	20	0	50	1.49
31985--32042	19	3.1	19	78	9	73	29	15	8	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33181--33249	23	3.0	23	84	0	93	27	24	27	20	1.99
33265--33576	103	3.0	103	98	0	588	36	23	13	26	1.92
37537--37742	64	3.2	64	78	12	199	30	23	16	29	1.97
43548--43628	24	3.6	22	77	14	85	23	25	22	28	1.99
46289--46446	64	2.5	64	85	4	194	31	24	17	27	1.97
48363--48431	23	3.0	23	89	0	102	26	26	27	20	1.99
48447--48644	103	1.9	103	92	0	333	37	22	12	27	1.90
49334--49499	63	2.7	63	91	0	262	31	16	17	33	1.93
49325--49496	31	5.5	32	74	12	151	32	17	18	31	1.94
53828--53945	32	3.7	31	81	7	139	31	18	17	32	1.95
53809--53965	63	2.5	63	94	0	269	31	19	17	32	1.94
53772--53965	31	6.2	31	76	9	171	32	18	18	30	1.95
54883--55039	64	2.5	64	77	10	160	26	20	21	32	1.97
60321--60359	20	2.0	19	95	5	69	23	30	15	30	1.95
63218--63257	16	2.3	18	87	8	57	67	2	0	30	1.04
63749--63832	28	2.9	29	87	5	116	14	19	20	46	1.84
63742--63822	28	2.8	28	88	3	117	14	17	22	45	1.84
64316--64356	2	21.5	2	90	9	68	48	0	0	51	1.00
64316--64356	19	2.2	19	100	0	82	48	0	0	51	1.00
64481--64519	2	20.0	2	94	5	71	48	0	0	51	1.00
64242--64563	167	2.0	161	93	4	540	35	3	12	48	1.58
73663--73785	38	3.2	38	67	13	115	44	3	4	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73628--73783	78	2.0	78	98	0	303	44	3	5	46	1.41
73629--73751	40	3.1	40	65	13	110	45	3	4	47	1.38
73939--74033	28	3.2	28	76	19	95	41	10	7	41	1.67
73935--74067	60	2.2	60	78	12	141	41	9	9	39	1.70

Tables:   1

The End!