Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002131.1 Hibiscus syriacus cultivar Beakdansim tig00004360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85506
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:8246 original size:21 final size:21
Alignment explanation
Indices: 8217--8257 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8207 ACAGTTAATT
8217 TAAAGATTAAAATTGTATAAAA
1 TAAAGATTAAAATT-TATAAAA
*
8239 TAAA-ATTATAATTTATAAA
1 TAAAGATTAAAATTTATAAA
8258 TATTCAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (21 bp):
TAAAGATTAAAATTTATAAAA
Found at i:16092 original size:13 final size:13
Alignment explanation
Indices: 16074--16101 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16064 CGTTCAGTTT
16074 AGTATAATAAAAG
1 AGTATAATAAAAG
16087 AGTATAATAAAAG
1 AGTATAATAAAAG
16100 AG
1 AG
16102 GATCACCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (13 bp):
AGTATAATAAAAG
Found at i:18936 original size:12 final size:12
Alignment explanation
Indices: 18919--18961 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
18909 AATCAAAAAA
18919 TAATATTAGAAT
1 TAATATTAGAAT
* *
18931 TAATATTAATAAA
1 TAATATT-AGAAT
*
18944 AAATATTAGAAT
1 TAATATTAGAAT
18956 TAATAT
1 TAATAT
18962 AATTAAAAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (12 bp):
TAATATTAGAAT
Found at i:18953 original size:25 final size:25
Alignment explanation
Indices: 18915--18975 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
18905 TCAAAATCAA
18915 AAAATAATATTAGAATTAATATTAA-T
1 AAAA-AATATTAGAATTAATA-TAATT
18941 AAAAAATATTAGAATTAATATAATT
1 AAAAAATATTAGAATTAATATAATT
*
18966 AAAAACTATT
1 AAAAAATATT
18976 TTAAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 3 0.09
25 26 0.79
26 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (25 bp):
AAAAAATATTAGAATTAATATAATT
Found at i:24182 original size:27 final size:26
Alignment explanation
Indices: 24152--24207 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
24142 AACTCGTCTT
* *
24152 CTCCACCGCCTCCTTCCCTGTCCTCTC
1 CTCCACCCCCTCCTTCCCTATCCT-TC
* *
24179 CTCCGCCCCCTTCTTCCCTATCCTTC
1 CTCCACCCCCTCCTTCCCTATCCTTC
24205 CTC
1 CTC
24208 TTCCTATCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.04, C:0.59, G:0.05, T:0.32
Consensus pattern (26 bp):
CTCCACCCCCTCCTTCCCTATCCTTC
Found at i:25604 original size:27 final size:27
Alignment explanation
Indices: 25572--25623 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
25562 AAAATATTCC
25572 ATAATCAGAAATCATATGCA-AAATACA
1 ATAATCAGAAATCATAT-CAGAAATACA
*
25599 ATAATCAGATATCATATCAGAAATA
1 ATAATCAGAAATCATATCAGAAATA
25624 TATGGTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (27 bp):
ATAATCAGAAATCATATCAGAAATACA
Found at i:27470 original size:16 final size:17
Alignment explanation
Indices: 27414--27471 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 17
27404 TTTCAAATAA
* *
27414 TATTAAATTCTTA-TTT
1 TATTAAATTATAATTTT
27430 TATTAATATTATAATTGTT
1 TATTAA-ATTATAATT-TT
27449 TAATTAAATT-TAATTTT
1 T-ATTAAATTATAATTTT
27466 TATTAA
1 TATTAA
27472 TATGGAAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 11 0.31
17 8 0.22
18 6 0.17
19 6 0.17
20 5 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
TATTAAATTATAATTTT
Found at i:33955 original size:5 final size:5
Alignment explanation
Indices: 33947--33971 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
33937 AGAAAAGCGG
33947 GAGCC GAGCC GAGCC GAGCC GAGCC
1 GAGCC GAGCC GAGCC GAGCC GAGCC
33972 TAGATGCAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.40, T:0.00
Consensus pattern (5 bp):
GAGCC
Found at i:37051 original size:2 final size:2
Alignment explanation
Indices: 37044--37106 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
37034 CCAGTAGCGG
37044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37086 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
37107 GGGTAAATTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37285 original size:13 final size:13
Alignment explanation
Indices: 37259--37293 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
37249 CAATCCTGGC
37259 GACATACG-GGGT
1 GACATACGAGGGT
37271 GACATACGAGGGT
1 GACATACGAGGGT
37284 GACATACGAG
1 GACATACGAG
37294 CCATATACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.31, C:0.17, G:0.37, T:0.14
Consensus pattern (13 bp):
GACATACGAGGGT
Found at i:37310 original size:33 final size:33
Alignment explanation
Indices: 37273--37346 Score: 148
Period size: 33 Copynumber: 2.2 Consensus size: 33
37263 TACGGGGTGA
37273 CATACGAGGGTGACATACGAGCCATATACGAGT
1 CATACGAGGGTGACATACGAGCCATATACGAGT
37306 CATACGAGGGTGACATACGAGCCATATACGAGT
1 CATACGAGGGTGACATACGAGCCATATACGAGT
37339 CATACGAG
1 CATACGAG
37347 CCAATGGGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.18
Consensus pattern (33 bp):
CATACGAGGGTGACATACGAGCCATATACGAGT
Found at i:37373 original size:22 final size:22
Alignment explanation
Indices: 37342--37421 Score: 79
Period size: 22 Copynumber: 3.4 Consensus size: 22
37332 TACGAGTCAT
*
37342 ACGAGCCAATGGGGAGGATGCA
1 ACGAGCCAATGGGGAGCATGCA
*
37364 ACGAGGCAATGGGGAGCATGCAGGAA
1 ACGAGCCAATGGGGAGCATGC----A
*
37390 TAGAGAGCCAATGGGGAGCATGCA
1 -A-CGAGCCAATGGGGAGCATGCA
37414 ACGAGCCA
1 ACGAGCCA
37422 TATACGAGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
22 25 0.53
23 1 0.02
24 1 0.02
26 1 0.02
27 1 0.02
28 18 0.38
ACGTcount: A:0.34, C:0.19, G:0.39, T:0.09
Consensus pattern (22 bp):
ACGAGCCAATGGGGAGCATGCA
Found at i:37402 original size:28 final size:28
Alignment explanation
Indices: 37370--37535 Score: 188
Period size: 28 Copynumber: 5.6 Consensus size: 28
37360 TGCAACGAGG
37370 CAATGGGGAGCATGCAGGAATAGAGAGC
1 CAATGGGGAGCATGCAGGAATAGAGAGC
* *
37398 CAATGGGGAGCATGCAACGAGCCATATACGAGC
1 CAATGGGGAGCATGC-A-G-G-AATAGA-GAGC
* *
37431 CCACGGGGAGCATGCAGGAATAGAGAGC
1 CAATGGGGAGCATGCAGGAATAGAGAGC
* *
37459 CAATGGGGAGCATGCAACGAGCCATATACGAGC
1 CAATGGGGAGCATGC-A-G-G-AATAGA-GAGC
37492 CAATGGGGAGCATGCAGGAATAGAGAGC
1 CAATGGGGAGCATGCAGGAATAGAGAGC
37520 CAATGGGGAGCATGCA
1 CAATGGGGAGCATGCA
37536 ACGAGCCATA
Statistics
Matches: 116, Mismatches: 12, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
28 52 0.45
29 10 0.09
30 4 0.03
31 4 0.03
32 10 0.09
33 36 0.31
ACGTcount: A:0.34, C:0.20, G:0.36, T:0.11
Consensus pattern (28 bp):
CAATGGGGAGCATGCAGGAATAGAGAGC
Found at i:37402 original size:50 final size:51
Alignment explanation
Indices: 37344--37569 Score: 213
Period size: 61 Copynumber: 4.1 Consensus size: 51
37334 CGAGTCATAC
* *
37344 GAGCCAATGGGGAGGATGCAACGAGGCA-ATGGGGAGCATGCAGGAATAGA
1 GAGCCAATGGGGAGCATGCAACGAGCCATATGGGGAGCATGCAGGAATAGA
37394 GAGCCAATGGGGAGCATGCAACGAGCCATATACGAGCCCACGGGGAGCATGCAGGAATAGA
1 GAGCCAATGGGGAGCATGCAACGAGCCATAT----------GGGGAGCATGCAGGAATAGA
37455 GAGCCAATGGGGAGCATGCAACGAGCCATATACGAGCCAATGGGGAGCATGCAGGAATAGA
1 GAGCCAATGGGGAGCATGCAACGAGCC--AT--------ATGGGGAGCATGCAGGAATAGA
**
37516 GAGCCAATGGGGAGCATGCAACGAGCCATAT-ACGAGCCATGCAGGAATAGA
1 GAGCCAATGGGGAGCATGCAACGAGCCATATGGGGAG-CATGCAGGAATAGA
37567 GAG
1 GAG
37570 GTCGCCATGC
Statistics
Matches: 150, Mismatches: 4, Indels: 43
0.76 0.02 0.22
Matches are distributed among these distances:
50 29 0.19
51 21 0.14
59 2 0.01
61 94 0.63
63 2 0.01
71 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.36, T:0.11
Consensus pattern (51 bp):
GAGCCAATGGGGAGCATGCAACGAGCCATATGGGGAGCATGCAGGAATAGA
Found at i:37459 original size:61 final size:61
Alignment explanation
Indices: 37364--37554 Score: 346
Period size: 61 Copynumber: 3.1 Consensus size: 61
37354 GGAGGATGCA
* *
37364 ACGAGGCAATGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
1 ACGAGCCAACGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
*
37425 ACGAGCCCACGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
1 ACGAGCCAACGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
*
37486 ACGAGCCAATGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
1 ACGAGCCAACGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
37547 ACGAGCCA
1 ACGAGCCA
37555 TGCAGGAATA
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 125 1.00
ACGTcount: A:0.34, C:0.21, G:0.35, T:0.10
Consensus pattern (61 bp):
ACGAGCCAACGGGGAGCATGCAGGAATAGAGAGCCAATGGGGAGCATGCAACGAGCCATAT
Found at i:37618 original size:29 final size:29
Alignment explanation
Indices: 37568--37676 Score: 184
Period size: 29 Copynumber: 3.8 Consensus size: 29
37558 AGGAATAGAG
* *
37568 AGGTCGCCATGCAG-CCTAGGCGACCTTGT
1 AGGTCGCCATGTAGTCC-CGGCGACCTTGT
37597 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
37626 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
37655 AGGTCGCCATGTAGTCCCGGCG
1 AGGTCGCCATGTAGTCCCGGCG
37677 CCATTCCATC
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
29 75 0.97
30 2 0.03
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (29 bp):
AGGTCGCCATGTAGTCCCGGCGACCTTGT
Found at i:37794 original size:36 final size:37
Alignment explanation
Indices: 37726--37799 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
37716 CATAGATTCC
37726 TTCACGTGCTCCCCGCTGCATTGCCTACACCTCCCAA
1 TTCACGTGCTCCCCGCTGCATTGCCTACACCTCCCAA
37763 TTCACGTGCTCCCCGCTGCA-TGCCTACACCTCCCAA
1 TTCACGTGCTCCCCGCTGCATTGCCTACACCTCCCAA
37799 T
1 T
37800 GCATGCATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 17 0.46
37 20 0.54
ACGTcount: A:0.16, C:0.46, G:0.14, T:0.24
Consensus pattern (37 bp):
TTCACGTGCTCCCCGCTGCATTGCCTACACCTCCCAA
Found at i:37827 original size:18 final size:18
Alignment explanation
Indices: 37804--37838 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37794 CCCAATGCAT
37804 GCATGTGAACCATTTGAG
1 GCATGTGAACCATTTGAG
37822 GCATGTGAACCATTTGA
1 GCATGTGAACCATTTGA
37839 TTATTGGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (18 bp):
GCATGTGAACCATTTGAG
Found at i:37971 original size:23 final size:23
Alignment explanation
Indices: 37943--37988 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
37933 AAAAGAAAGA
37943 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
37966 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
37989 CCGAGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.39, T:0.09
Consensus pattern (23 bp):
AAGAAAGGGAGAAGAGATTGCAG
Found at i:38001 original size:4 final size:4
Alignment explanation
Indices: 37992--38057 Score: 55
Period size: 4 Copynumber: 16.5 Consensus size: 4
37982 ATTGCAGCCG
** **
37992 AGAA AGAA AGAA AGAA AGGG AGAA AGGAA AGAA AGAA AGGG AGAA AGGAA
1 AGAA AGAA AGAA AGAA AGAA AGAA A-GAA AGAA AGAA AGAA AGAA A-GAA
*
38042 AGTA AG-A AG-A AGAA AG
1 AGAA AGAA AGAA AGAA AG
38058 GGAGATAAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
3 6 0.12
4 36 0.72
5 8 0.16
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (4 bp):
AGAA
Found at i:38003 original size:25 final size:23
Alignment explanation
Indices: 37943--38003 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
37933 AAAAGAAAGA
**
37943 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
**
37966 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
*
37989 CCGAGAAAGAAAGAA
1 --AAGAAAGAAAGAA
38004 AGAAAGGGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 23 0.70
25 10 0.30
ACGTcount: A:0.51, C:0.07, G:0.36, T:0.07
Consensus pattern (23 bp):
AAGAAAGAAAGAAGAGATTGCAG
Found at i:38023 original size:21 final size:21
Alignment explanation
Indices: 37991--38049 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
37981 GATTGCAGCC
37991 GAGAAA-GAAAGAAAGAAAGG
1 GAGAAAGGAAAGAAAGAAAGG
38011 GAGAAAGGAAAGAAAGAAAGG
1 GAGAAAGGAAAGAAAGAAAGG
*
38032 GAGAAAGGAAAGTAAGAA
1 GAGAAAGGAAAGAAAGAA
38050 GAAGAAAGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 6 0.16
21 31 0.84
ACGTcount: A:0.63, C:0.00, G:0.36, T:0.02
Consensus pattern (21 bp):
GAGAAAGGAAAGAAAGAAAGG
Found at i:38332 original size:28 final size:30
Alignment explanation
Indices: 38292--38354 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
38282 ATTTTTTATA
*
38292 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
38322 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
38350 TAATA
1 TAATA
38355 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:38361 original size:28 final size:28
Alignment explanation
Indices: 38296--38361 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
38286 TTTATATAAT
*
38296 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
38324 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
38352 ATAATTTATA
1 ATAATATATA
38362 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:38364 original size:21 final size:21
Alignment explanation
Indices: 38331--38379 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
38321 CTAATATAAT
38331 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
38352 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
38373 ATTAACT
1 A-TAACT
38380 AGATTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:38924 original size:25 final size:25
Alignment explanation
Indices: 38870--38927 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
38860 GTTCCCACGT
* *
38870 CCCATGCACAGCATGCATCTGCATG
1 CCCATGCACAGCATGCATCTCCATC
* *
38895 ACCATGCACAGCATGCATC-CCCTCC
1 CCCATGCACAGCATGCATCTCCAT-C
38920 CCCATGCA
1 CCCATGCA
38928 TTCCCACGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.24, C:0.43, G:0.16, T:0.17
Consensus pattern (25 bp):
CCCATGCACAGCATGCATCTCCATC
Found at i:39018 original size:29 final size:29
Alignment explanation
Indices: 38986--39065 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
38976 TATACCTTGG
38986 AGGTCGCCCGGATTGCATGGCGACCTCCA
1 AGGTCGCCCGGATTGCATGGCGACCTCCA
39015 AGGTCGCCCGGATTGCATGGCGACCTCCA
1 AGGTCGCCCGGATTGCATGGCGACCTCCA
*
39044 AGGTCGCCTGGATTGCATGGCG
1 AGGTCGCCCGGATTGCATGGCG
39066 TCCTATGGCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (29 bp):
AGGTCGCCCGGATTGCATGGCGACCTCCA
Found at i:39987 original size:175 final size:173
Alignment explanation
Indices: 39651--40008 Score: 465
Period size: 175 Copynumber: 2.1 Consensus size: 173
39641 CTATTTTAGT
* * * *
39651 ACTTAATTTTTTATTTTTTTAAAATCATTCTTAATGTTTATTTTTTATTTCATTTTAATACCCCG
1 ACTTAATTTTTTATTTTTTTAAAACCATTCTAAATGTTTAGTTTTTATTTCAGTTTAATACCCCG
** * * * *
39716 CCGTTAAAATTTTAATTTGTTTAGTACCTAAACTATTAATTTTGGTATGTTTTAATATCTAAACT
66 CCGTTAAAATTTTAACGTGTTTAGTA-CTAAACTATCAATTTTGATACGTTTTAATACCTAAACT
39781 TTCAATTTTTTAAAAAGACTCAACATTATTAAAATAAAACAAAA
130 TTCAATTTTTTAAAAAGACTCAACATTATTAAAATAAAACAAAA
* *
39825 ACTTAATTTTTTATTTTTTTTAAAAACCATTCTAAATGTTTAGTTTTTGTTTCAGTTTAGTA-CC
1 ACTTAATTTTTTA-TTTTTTT-AAAACCATTCTAAATGTTTAGTTTTTATTTCAGTTTAATACCC
* *
39889 TGCCGTTACAAA-TTTAACGTGTTTAGT-CTAAACTATCAATTTTGATCCGTTTTAATACCTAAA
64 CGCCGTTA-AAATTTTAACGTGTTTAGTACTAAACTATCAATTTTGATACGTTTTAATACCTAAA
* *
39952 CTTTCAAGTTTTTTTTAAAAA-ACTTAACATTATTAAAATAAAATAAAA
128 CTTTCAA---TTTTTTAAAAAGACTCAACATTATTAAAATAAAACAAAA
*
40000 A-ATAATTTT
1 ACTTAATTTT
40009 GAAAAATTAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
173 38 0.24
174 20 0.12
175 55 0.34
176 48 0.30
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (173 bp):
ACTTAATTTTTTATTTTTTTAAAACCATTCTAAATGTTTAGTTTTTATTTCAGTTTAATACCCCG
CCGTTAAAATTTTAACGTGTTTAGTACTAAACTATCAATTTTGATACGTTTTAATACCTAAACTT
TCAATTTTTTAAAAAGACTCAACATTATTAAAATAAAACAAAA
Found at i:42700 original size:59 final size:58
Alignment explanation
Indices: 42566--42700 Score: 146
Period size: 60 Copynumber: 2.3 Consensus size: 58
42556 TTAATATGGG
* * * * * *
42566 TAAAG-TATACAAATGATCCCCGACTATAAGATAATACTTTGTTGAGTCCATTGACTAT
1 TAAAGTTATA-AAATGATCCCCAACTATAAGACAATACTTTATTGAATACATCGACTAT
* * * *
42624 TAAAAGTTATAAGATGATCCCTCAACTATAGGACATTACTTTATTTAATACATCGACTAT
1 T-AAAGTTATAAAATGATCCC-CAACTATAAGACAATACTTTATTGAATACATCGACTAT
42684 TAAAGTTATAAAATGAT
1 TAAAGTTATAAAATGAT
42701 TATCTGACTA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
58 1 0.02
59 28 0.44
60 34 0.54
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (58 bp):
TAAAGTTATAAAATGATCCCCAACTATAAGACAATACTTTATTGAATACATCGACTAT
Found at i:45000 original size:29 final size:29
Alignment explanation
Indices: 44958--45029 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
44948 GTAACTCTTC
**
44958 ATAATTAGAGGACTCGATAAAAATATTTT
1 ATAATTAGAGGACTCGATAAAAATATCCT
44987 ATAATTAGAGGACTCGATAAAAATATCCT
1 ATAATTAGAGGACTCGATAAAAATATCCT
45016 ATAATTAGAGGACT
1 ATAATTAGAGGACT
45030 ATTTACATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (29 bp):
ATAATTAGAGGACTCGATAAAAATATCCT
Found at i:45808 original size:12 final size:14
Alignment explanation
Indices: 45790--45822 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
45780 CTGAGAAGAA
45790 GATATATAT-ATAT
1 GATATATATGATAT
45803 -ATATATATGATAT
1 GATATATATGATAT
45816 GATATAT
1 GATATAT
45823 TAAGAGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.44
13 4 0.22
14 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (14 bp):
GATATATATGATAT
Found at i:49097 original size:42 final size:42
Alignment explanation
Indices: 49050--49130 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
49040 TATTATGAGG
*
49050 AATTGGGTGATGGAAAAGATTATTATCAACTATTAAGAGAAC
1 AATTGGGTGATGGAAAAGATGATTATCAACTATTAAGAGAAC
49092 AATTGGGTGATGGAAAAGATGATTATCAACTATTAAGAG
1 AATTGGGTGATGGAAAAGATGATTATCAACTATTAAGAG
49131 GAATAATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.28
Consensus pattern (42 bp):
AATTGGGTGATGGAAAAGATGATTATCAACTATTAAGAGAAC
Found at i:53447 original size:21 final size:21
Alignment explanation
Indices: 53423--53485 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
53413 GCAAATTCGC
53423 GTTGCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
* **
53444 GTTGAAAATCGCGTTGCGAT-
1 GTTGCATTTCGCGTTGCGATA
* * *
53464 TTTTCATTTAGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
53485 G
1 G
53486 CCTACAGTTG
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.19, C:0.16, G:0.27, T:0.38
Consensus pattern (21 bp):
GTTGCATTTCGCGTTGCGATA
Found at i:53503 original size:22 final size:22
Alignment explanation
Indices: 53475--53568 Score: 113
Period size: 22 Copynumber: 4.4 Consensus size: 22
53465 TTTCATTTAG
*
53475 CGTTGCGATAGCCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
53497 CGTTGCGAT--TTTTCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
53516 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
*
53538 TGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
53560 CGTTGCGAT
1 CGTTGCGAT
53569 TTTGTAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
19 10 0.17
20 4 0.07
21 5 0.09
22 39 0.67
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:53520 original size:41 final size:41
Alignment explanation
Indices: 53455--53546 Score: 132
Period size: 41 Copynumber: 2.2 Consensus size: 41
53445 TTGAAAATCG
*
53455 CGTTGCGATTTTTCATTTAGCGTTGCGATAGCCTACAGTTGT
1 CGTTGCGATTTTTCAATTA-CGTTGCGATAGCCTACAGTTGT
*
53497 CGTTGCGATTTTTCAAATT-CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTTC-AATTACGTTGCGATAGCCTACAGTTGT
*
53538 TGTTGCGAT
1 CGTTGCGAT
53547 AGTCTACAGT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 29 0.63
42 14 0.30
43 3 0.07
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.41
Consensus pattern (41 bp):
CGTTGCGATTTTTCAATTACGTTGCGATAGCCTACAGTTGT
Found at i:53647 original size:33 final size:33
Alignment explanation
Indices: 53606--53726 Score: 143
Period size: 33 Copynumber: 3.4 Consensus size: 33
53596 TATCGCAAAT
53606 TCGCGTTGCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCATTTCGCGTTGCGATAGTTGAAAA
*
53639 TCGTGTTGCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCATTTCGCGTTGCGATAGTTGAAAA
*
53672 TCGCGTTGCGATTTTCCATTTCGCATTGCGATAGTTGAAAA
1 TCGCGTT--G------CATTTCGCGTTGCGATAGTTGAAAA
53713 TCGCGTTGCGATTT
1 TCGCGTTGC-ATTT
53727 TCTATTTCGT
Statistics
Matches: 76, Mismatches: 3, Indels: 17
0.79 0.03 0.18
Matches are distributed among these distances:
33 39 0.51
34 4 0.05
35 1 0.01
39 1 0.01
41 31 0.41
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (33 bp):
TCGCGTTGCATTTCGCGTTGCGATAGTTGAAAA
Found at i:53667 original size:21 final size:21
Alignment explanation
Indices: 53651--53724 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 21
53641 GTGTTGCATT
53651 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
53672 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
*
53692 TCGCATTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
53713 TCGCGTTGCGAT
1 TCGCGTTGCGAT
53725 TTTCTATTTC
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 14 0.35
21 26 0.65
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:53701 original size:41 final size:40
Alignment explanation
Indices: 53647--53745 Score: 164
Period size: 41 Copynumber: 2.5 Consensus size: 40
53637 AATCGTGTTG
53647 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGC-TTGCGATAGTTGAAAATCGCGTTGCGATTTTC
53688 CATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGC-TTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
53729 TATTTCG-TTGCGATAGT
1 CATTTCGCTTGCGATAGT
53746 CTACAGTTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
39 10 0.18
41 46 0.82
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.38
Consensus pattern (40 bp):
CATTTCGCTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:54521 original size:19 final size:19
Alignment explanation
Indices: 54497--54582 Score: 93
Period size: 19 Copynumber: 4.4 Consensus size: 19
54487 CAACGAATTT
54497 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
* * **
54516 TCGCAACGACAACTGTAGACTA
1 TCGCAACG--AA-TTTGGAAAA
54538 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
*
54557 TCGCAACGAA-ATGGAAAA
1 TCGCAACGAATTTGGAAAA
54575 TCGCAACG
1 TCGCAACG
54583 CGAAATGCAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
18 15 0.27
19 23 0.42
20 2 0.04
21 2 0.04
22 13 0.24
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (19 bp):
TCGCAACGAATTTGGAAAA
Found at i:55957 original size:20 final size:20
Alignment explanation
Indices: 55932--56024 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
55922 TTTTCCCAAT
55932 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
55952 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
55972 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
55993 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
56014 TCGCAATGCGA
1 TCGCAATGCGA
56025 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:55974 original size:41 final size:41
Alignment explanation
Indices: 55929--56024 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
55919 CGATTTTCCC
55929 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
55970 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
56011 AAATCGCAATGCGA
1 AATTCGCAATGCGA
56025 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:55978 original size:21 final size:20
Alignment explanation
Indices: 55932--56024 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
55922 TTTTCCCAAT
*
55932 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
55952 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
55972 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
55993 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
56014 TCGCAATGCGA
1 TCGCAATGCGA
56025 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:56037 original size:41 final size:41
Alignment explanation
Indices: 55951--56085 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
55941 GAATAAGTAA
* * *
55951 ATCGCAACGCGAATTGGGAAATTCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
55992 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
56033 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
56074 TTCGCAACGCGA
1 ATCGCAACGCGA
56086 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:56038 original size:20 final size:20
Alignment explanation
Indices: 56013--56106 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
56003 AATTGGGAAA
*
56013 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
56033 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
56054 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
56074 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
56094 TTCGAAACGCGAT
1 ATCGCAACGCGAT
56107 TTACTTAGCG
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 45 0.76
21 14 0.24
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:56687 original size:19 final size:19
Alignment explanation
Indices: 56663--56707 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
56653 GCAACGAGAT
*
56663 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
*
56682 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACAAA
56701 AATCGCA
1 AATCGCA
56708 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:56725 original size:19 final size:19
Alignment explanation
Indices: 56703--56906 Score: 194
Period size: 19 Copynumber: 11.1 Consensus size: 19
56693 GAAACCAAAA
*
56703 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
56722 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
56741 TGGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
56760 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
56779 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
56799 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
56815 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
56832 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
56846 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
56865 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
56885 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
56905 TC
1 TC
56907 AACCAAAAAG
Statistics
Matches: 155, Mismatches: 17, Indels: 26
0.78 0.09 0.13
Matches are distributed among these distances:
14 20 0.13
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 77 0.50
20 49 0.32
21 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:56822 original size:39 final size:38
Alignment explanation
Indices: 56708--56906 Score: 161
Period size: 33 Copynumber: 5.4 Consensus size: 38
56698 CAAAATCGCA
* *
56708 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTGGC-G
1 TTGCGATTTTCATTTCGCGTTGCGATTTTC-TTTCGCGG
*
56746 TTGCGATTTTCATTTCGCGTTGCGATTTTAATTTCGCGG
1 TTGCGATTTTCATTTCGCGTTGCGATTTT-CTTTCGCGG
*
56785 TTGCGATTTTCATTTCGCGTTGCGATTGTC--T---GG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCTTTCGCGG
* ** *
56818 TCGCGATAGTCATTTCGCGTTGCGA--TTC--TCTC-G
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCTTTCGCGG
** * *
56851 TTGCGATAGTCATTTCCGCGTTGCGATTCTCATTATCTC-G
1 TTGCGATTTTCATTT-CGCGTTGCGATTTTC-TT-TCGCGG
56891 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
56907 AACCAAAAAG
Statistics
Matches: 136, Mismatches: 13, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
31 3 0.02
33 39 0.29
34 10 0.07
36 3 0.02
38 33 0.24
39 30 0.22
40 18 0.13
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.44
Consensus pattern (38 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTCTTTCGCGG
Found at i:56883 original size:20 final size:20
Alignment explanation
Indices: 56849--56906 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
56839 GCGATTCTCT
**
56849 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
56869 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
56889 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
56907 AACCAAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:57653 original size:20 final size:20
Alignment explanation
Indices: 57628--57665 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57618 AATAGTTTCT
57628 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
57648 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
57666 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:57935 original size:22 final size:22
Alignment explanation
Indices: 57910--57953 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
57900 GATTTAGATA
57910 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
57932 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
57954 TGAGAGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:58186 original size:41 final size:42
Alignment explanation
Indices: 58140--58275 Score: 118
Period size: 41 Copynumber: 3.3 Consensus size: 42
58130 CGAAAGTCAG
* * * *
58140 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTAT
1 TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
* * *
58181 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCTCAA
1 TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
** ** * *
58223 T-TCGCGTTGCG-ATTTACTTATTCGCATTGCGAATTTCCCAA
1 TATCGCGTTGCGAAAGTAAGTA-TCGCATTGCGATTTTCTCAA
58264 T-TCGCGTTGCGA
1 TATCGCGTTGCGA
58276 TTTACTTATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
40 3 0.04
41 70 0.92
42 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (42 bp):
TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
Found at i:58191 original size:21 final size:21
Alignment explanation
Indices: 58158--58237 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 21
58148 TGCGAAAGTA
* * *
58158 AGTATCTCGTTGCGATTTTTT
1 AGTATCGCATTGCGATTTTTC
* **
58179 ATTATCGCATTGCGA-TAGTC
1 AGTATCGCATTGCGATTTTTC
58199 AGTATCGCATTGCGATTTTCTC
1 AGTATCGCATTGCGATTTT-TC
* *
58221 AAT-TCGCGTTGCGATTT
1 AGTATCGCATTGCGATTT
58238 ACTTATTCGC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 16 0.35
21 26 0.57
22 4 0.09
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (21 bp):
AGTATCGCATTGCGATTTTTC
Found at i:58214 original size:20 final size:20
Alignment explanation
Indices: 58121--58214 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
58111 CGCTTTGAAA
*
58121 ATCGCATTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
58141 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
58161 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
58182 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
58202 ATCGCATTGCGAT
1 ATCGCATTGCGAT
58215 TTTCTCAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 46 0.78
21 13 0.22
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:58247 original size:20 final size:20
Alignment explanation
Indices: 58203--58295 Score: 105
Period size: 21 Copynumber: 4.5 Consensus size: 20
58193 ATAGTCAGTA
*
58203 TCGCATTGCGATTTTCTCAAT
1 TCGCATTGCGATTTACT-AAT
* *
58224 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTAAT
* *
58244 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTAAT
* *
58265 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTAAT
58285 TCGCATTGCGA
1 TCGCATTGCGA
58296 ATTGGGAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.47
21 31 0.53
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTAAT
Found at i:58276 original size:41 final size:41
Alignment explanation
Indices: 58203--58298 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
58193 ATAGTCAGTA
* *
58203 TCGCATTGCGATTTTCTCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
58244 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
58285 TCGCATTGCGAATT
1 TCGCATTGCGAATT
58299 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:59642 original size:16 final size:15
Alignment explanation
Indices: 59615--59644 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
59605 AACTTTAATT
59615 TTATATTTAATTTTA
1 TTATATTTAATTTTA
59630 TTATATATTAATTTT
1 TTATAT-TTAATTTT
59645 GAAACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTAATTTTA
Found at i:60086 original size:18 final size:19
Alignment explanation
Indices: 60047--60088 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
60037 AAAATTGATT
*
60047 AAAATAAAAGAAAATGTAA
1 AAAACAAAAGAAAATGTAA
60066 AAAACAAAAGAAAATGTAA
1 AAAACAAAAGAAAATGTAA
60085 AAAA
1 AAAA
60089 TGATTTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAACAAAAGAAAATGTAA
Found at i:67495 original size:2 final size:2
Alignment explanation
Indices: 67488--67519 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
67478 CAAGACAACC
*
67488 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67520 CAACTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69806 original size:12 final size:12
Alignment explanation
Indices: 69786--69825 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
69776 CACATATAAG
* *
69786 ATATAAAATCTA
1 ATATTAAATATA
69798 ATATTAAATATA
1 ATATTAAATATA
69810 ATATTAAATATA
1 ATATTAAATATA
69822 ATAT
1 ATAT
69826 ACAAACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATTAAATATA
Found at i:70546 original size:14 final size:14
Alignment explanation
Indices: 70527--70553 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70517 TATTTCGAAA
70527 ACACCCACACACAC
1 ACACCCACACACAC
70541 ACACCCACACACA
1 ACACCCACACACA
70554 GACCACACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (14 bp):
ACACCCACACACAC
Found at i:71359 original size:3 final size:3
Alignment explanation
Indices: 71351--71388 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
71341 TAATTTGTAT
71351 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TTAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TA
71389 TTTATAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:71812 original size:55 final size:55
Alignment explanation
Indices: 71590--72164 Score: 603
Period size: 55 Copynumber: 10.6 Consensus size: 55
71580 CTCTCTCTTG
* * * * * * * * * *
71590 CTTCAGGGAGTATAAAACTCAAACAATCTTTATA-AAACATGTATGTTCTCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCA-ACAATCGTGTCTGCTCCCTATTT
* * * *
71645 CTTCAGAGAGTATAAGA-T--TA-AATCTTCAACAAACGTGTCCGCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* *
71696 CTTCAGAGAGTATATGACT----CAATCTTCAATCAAACGTGT-TCGCTCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAA-CAATCGTGTCT-GCTCCCTATTT
* * * * * ** * *
71748 ATTCAGAGAGTATATGACTTGAACAACCTTCAACAAACGTGTCTATTCTCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * ** *
71803 CTTCTGAGAGTATAAGACTCGAGCAATCTTCAACAATAATGTTTGCTCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * *
71858 CTTCAGAGAGTATAAGACTTGAACAATTTTCAACATTCGTGTCTGCTCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * * *
71913 CTTAAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTATGCTCCTTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * *
71968 CTTCAAAGAGTATAAGACTCGAACAATTTTCAACATTCGTGTCTGCTCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * * *
72023 CTTCAGAGAGTATTAGACTCGAACAATTTTCAACATTCGTGTATGCTCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * * **
72078 CTTCAGATAGTATGAGACTCGAACATTCTTCAACAATCGTGTCTGCTCTTTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
*
72133 CTTCAGAGAGTATAAGACTCGAACAATTTTCA
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCA
72165 TTTGCTTCAC
Statistics
Matches: 441, Mismatches: 69, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
50 1 0.00
51 48 0.11
52 39 0.09
54 1 0.00
55 342 0.78
56 10 0.02
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (55 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTT
Found at i:73293 original size:213 final size:215
Alignment explanation
Indices: 72534--73422 Score: 1160
Period size: 214 Copynumber: 4.1 Consensus size: 215
72524 ATTTTGGTGA
** * * ** * * * * *
72534 AAAACATCCTGCCCGAAGGTCTTATGGATGACCTGAAGGATTTATTC-TCTTACTCGAGAGACTC
1 AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACGTA-TCATCTTGCTCTAAAGGCTT
* * * * *
72598 ACAAAAGACCCGAAGGATTTAAGCATCATGCTTGAAAGACTTACTGATGACCCGAAGGTTTTATA
65 ACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTATA
* * * *
72663 AATTTTGAAATTTTGAAAATCGCATTATTCGTTTTCAAAAATTACATCTTTTTAAAACATCATTT
130 AATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCA-TT
72728 TTTTTATTTTCAAATTCATGTG
194 TTTTTATTTTCAAATTCATGTG
** * *
72750 AAAACATCATACCTGAAGGTTTTATGGATGACCCGAATGACGTATCATCTTGCTCTAAAGGCTTA
1 AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACGTATCATCTTGCTCTAAAGGCTTA
* * * *
72815 CAGATGACCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGGTCCGAAAGACTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTATAA
* * *
72880 ATTAT-ACAATTTTGAAAAAT-GCATTTTTCGTTTTCAAAAATTCCATCTTCTTAAATCATCA-T
131 ATTGTGA-AATTTTG-AAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATT
* *
72942 TTTTCATTTTCAAATTCATGTA
194 TTTTTATTTTCAAATTCATGTG
*
72964 AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACTTATCATCTTGCTCTAAAGGCTTA
1 AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACGTATCATCTTGCTCTAAAGGCTTA
* * * * *
73029 TAGGTGACCCGAATGATTTAAGCATCATGCTCGAAAAACTTACTGATGGCCCGAAGGTTTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTATAA
* *
73094 ATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTAAAAAATTTCATCTTCTTAAAACATCATTTT
131 ATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
* *
73159 TTTATTTCCAAATTAATGTG
196 TTTATTTTCAAATTCATGTG
* * * *
73179 AAAACATCCCACCCGAAAGTCTTATGGATGGCCCGAAGGA-GT-TCATCTTGCTCTAAACGCTTA
1 AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACGTATCATCTTGCTCTAAAGGCTTA
* * *
73242 CAGATGACCCGAAAGATTTAAGCATCATGCTCGAAAGACTTACTAATGGCCCGAAGGAGTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTATAA
* * *
73307 ATTGTGATATTTTGAAAATCACATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATAATTTT
131 ATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
*
73372 TTTCATTTTCAAATTCATTTG
196 TTT-ATTTTCAAATTCATGTG
** * * *
73393 AAATTATCCTACCTGAAGGTTTTATGGATG
1 AAAACATCCCACCCGAAGGTCTTATGGATG
73423 GTTTGCTTCA
Statistics
Matches: 588, Mismatches: 78, Indels: 16
0.86 0.11 0.02
Matches are distributed among these distances:
213 146 0.25
214 224 0.38
215 60 0.10
216 153 0.26
217 5 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (215 bp):
AAAACATCCCACCCGAAGGTCTTATGGATGACCCGAATGACGTATCATCTTGCTCTAAAGGCTTA
CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTATAA
ATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
TTTATTTTCAAATTCATGTG
Found at i:74606 original size:45 final size:44
Alignment explanation
Indices: 74539--74623 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
74529 AATTTAAAAC
* * *
74539 TCAAGCCGCCCTTTGTGGGTTTTCAACTTGAGACCTCCTTTGGTT
1 TCAAGACGCCCTTTGTGAGTTTTCAACTTGA-ACCCCCTTTGGTT
* * *
74584 TCAAGACGCCTTTTTTGAGTTTTCATCTTGAACCCCCTTT
1 TCAAGACGCCCTTTGTGAGTTTTCAACTTGAACCCCCTTT
74624 TATTCATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 8 0.24
45 26 0.76
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (44 bp):
TCAAGACGCCCTTTGTGAGTTTTCAACTTGAACCCCCTTTGGTT
Found at i:74644 original size:10 final size:11
Alignment explanation
Indices: 74621--74645 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74611 TTGAACCCCC
74621 TTTTATTCATT
1 TTTTATTCATT
74632 TTTTATTCATT
1 TTTTATTCATT
74643 TTT
1 TTT
74646 CATTTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATTCATT
Found at i:74649 original size:18 final size:18
Alignment explanation
Indices: 74626--74664 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
74616 CCCCCTTTTA
74626 TTCATTTTTTAT-TCATTT
1 TTCATTTTTT-TCTCATTT
74644 TTCATTTTTTTCTCATTT
1 TTCATTTTTTTCTCATTT
74662 TTC
1 TTC
74665 CCTTTTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 1 0.05
18 19 0.95
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
TTCATTTTTTTCTCATTT
Found at i:77579 original size:10 final size:10
Alignment explanation
Indices: 77564--77597 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
77554 TATTTCGAAA
77564 ACACCCACAC
1 ACACCCACAC
77574 ACACCCACAC
1 ACACCCACAC
*
77584 ACAGACCACAC
1 ACA-CCCACAC
77595 ACA
1 ACA
77598 TTGGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.44, C:0.53, G:0.03, T:0.00
Consensus pattern (10 bp):
ACACCCACAC
Found at i:83187 original size:22 final size:22
Alignment explanation
Indices: 83158--83212 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
83148 CTTAAATACT
**
83158 TAAAATTTCTAGTGCTTGAACA
1 TAAAATTTCTAGTAATTGAACA
* *
83180 TAAGATTTCTAGTAATTGAACC
1 TAAAATTTCTAGTAATTGAACA
83202 TAAAATTTCTA
1 TAAAATTTCTA
83213 AAAATAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (22 bp):
TAAAATTTCTAGTAATTGAACA
Done.