Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002132.1 Hibiscus syriacus cultivar Beakdansim tig00004361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97427

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1239--1291
23
2.3
23
90
0
79
18
26
24
30
1.98
1239--1305
23
3.0
23
86
2
73
19
22
25
32
1.97
2310--2485
58
3.0
60
84
8
220
22
18
22
36
1.95
4735--4782
22
2.0
25
84
11
66
45
10
6
37
1.64
37300--37541
121
2.0
121
97
0
457
40
13
7
38
1.73
39059--39093
17
2.1
17
94
0
61
54
25
11
8
1.64
42709--42811
51
2.0
51
100
0
206
39
1
11
46
1.51
44050--44110
13
4.5
13
76
13
61
47
1
1
49
1.21
44806--44889
22
3.7
22
96
3
141
38
3
11
46
1.58
52054--52121
22
3.1
21
80
15
84
51
16
11
20
1.75
57431--57478
2
24.0
2
100
0
96
50
0
0
50
1.00
58369--58791
140
3.0
140
99
0
830
32
14
11
41
1.82
66474--66735
128
2.1
123
95
4
463
40
0
0
59
0.97
66470--66733
133
2.0
131
91
7
437
40
0
0
59
0.97
66470--66728
5
53.4
5
88
11
398
40
0
0
59
0.97
67090--67186
3
32.0
3
93
2
167
32
2
0
64
1.05
77947--78267
160
2.0
159
95
4
576
29
14
21
34
1.93
79902--79941
8
4.6
9
84
15
57
85
0
15
0
0.61
79901--79942
16
2.6
16
92
3
66
83
0
16
0
0.65
79900--79941
9
4.6
9
90
3
66
85
0
14
0
0.59
81081--81843
83
9.2
83
93
0
1204
28
13
21
36
1.92
82626--83478
113
7.5
113
89
3
1234
35
14
18
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83731--83812
3
27.0
3
92
2
137
32
2
0
64
1.07
84097--84135
19
2.1
19
100
0
78
17
20
41
20
1.91
91265--91652
184
2.1
184
91
2
629
45
9
3
42
1.52
96099--96204
45
2.3
45
85
4
133
30
20
20
28
1.98
96145--96290
65
2.3
63
81
11
163
25
18
23
32
1.97

Tables:   1

The End!