Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002133.1 Hibiscus syriacus cultivar Beakdansim tig00004366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76106

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
527--602
38
2.0
38
97
2
145
46
15
10
27
1.79
14558--14600
20
2.1
21
83
8
54
13
23
41
20
1.88
21639--21717
2
39.5
2
100
0
158
49
0
0
50
1.00
21777--21833
3
18.7
3
75
10
53
29
5
0
64
1.15
21773--21825
16
3.2
16
81
5
61
30
3
0
66
1.10
21769--21840
21
3.5
22
71
17
66
27
4
0
68
1.08
37279--37324
24
1.9
24
86
0
65
80
2
15
2
0.91
37362--37410
9
5.6
9
85
9
66
79
2
18
0
0.83
37361--37410
17
3.0
16
88
8
66
78
2
20
0
0.86
38541--38745
111
1.8
111
82
6
263
38
22
18
21
1.94
40615--40705
24
3.4
26
75
21
73
32
2
1
63
1.13
40643--40683
16
2.7
15
88
11
50
24
2
0
73
0.96
40631--40681
23
2.2
24
82
10
61
25
3
0
70
1.04
40683--40713
2
15.5
2
100
0
62
48
0
0
51
1.00
40709--40756
22
2.1
23
84
3
62
16
6
6
70
1.28
40753--40860
25
4.4
24
73
13
78
30
6
0
62
1.27
40753--40818
33
2.1
30
82
17
82
27
4
0
68
1.09
40784--40866
27
3.1
27
76
11
91
33
7
1
57
1.34
40852--40891
2
20.5
2
94
5
73
47
0
0
52
1.00
40870--40980
57
1.9
57
81
0
132
34
3
4
57
1.36
40937--40990
9
6.4
8
95
4
65
29
0
0
70
0.88
40943--40990
3
16.3
3
95
4
89
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41042--41103
23
3.0
20
73
13
61
12
4
8
74
1.21
41037--41105
21
3.2
21
71
18
61
14
5
7
72
1.25
44183--44241
22
2.7
22
92
2
93
27
37
22
13
1.91
45349--45532
89
2.1
89
97
0
350
36
19
14
28
1.91
47745--47778
3
11.3
3
100
0
68
32
0
0
67
0.91
57319--58083
379
2.0
381
96
0
1417
32
15
20
31
1.94
61725--61758
2
17.0
2
100
0
68
50
0
0
50
1.00
62159--62202
16
2.6
17
75
7
54
43
0
0
56
0.99
63118--63432
153
2.1
153
95
0
567
35
12
16
35
1.86
70297--70351
23
2.4
23
84
0
74
21
25
20
32
1.97
75699--75750
21
2.4
22
80
9
61
15
28
23
32
1.95

Tables:   1

The End!