genome.fa.s2134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002134.1 Hibiscus syriacus cultivar Beakdansim tig00004367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129190

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24730--24833	52	2.0	52	100	0	208	38	7	19	34	1.80
31292--31330	18	2.2	18	85	0	51	33	0	0	66	0.92
37227--37350	62	2.0	62	100	0	248	33	22	9	33	1.87
40709--40741	17	1.9	17	88	11	50	45	3	0	51	1.16
44323--44430	41	2.6	42	80	2	128	19	9	14	56	1.65
44642--44697	23	2.4	23	80	17	62	50	1	1	46	1.22
44668--44778	29	3.8	29	77	16	106	43	0	1	54	1.17
44668--44778	58	1.9	57	80	12	129	43	0	1	54	1.17
45158--45198	14	2.8	15	77	7	57	31	12	7	48	1.68
45158--45224	15	4.5	15	78	10	57	38	13	4	43	1.64
45158--45230	30	2.5	30	88	2	103	35	13	4	46	1.63
45966--46044	36	2.2	35	86	2	104	17	39	13	29	1.89
49438--49475	20	2.0	19	90	10	60	47	10	23	18	1.79
49437--49481	20	2.6	16	80	19	54	44	11	22	22	1.84
53416--53471	22	2.5	22	97	0	103	53	17	23	5	1.64
63563--63615	26	2.1	26	85	3	72	37	1	1	58	1.20
63994--64138	71	2.1	71	90	3	231	39	4	22	34	1.73
64461--64535	37	2.1	36	85	7	98	46	1	4	48	1.29
65113--65146	14	2.4	14	90	9	52	32	8	2	55	1.45
65071--65120	2	25.5	2	91	4	84	48	2	0	50	1.12
72117--72163	23	2.0	23	100	0	94	25	4	12	57	1.54
83785--83843	29	2.0	29	83	6	73	32	10	20	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83737--83958	113	2.0	113	98	0	426	33	9	21	35	1.86
83898--83956	29	2.0	29	83	6	73	32	10	20	37	1.86
83997--84056	24	2.5	25	76	20	65	58	5	1	35	1.30
90375--90470	35	2.7	36	88	4	149	38	3	3	55	1.32
90448--90487	17	2.4	17	87	8	55	32	2	2	62	1.22
103415--103513	52	1.9	51	93	2	171	26	13	14	46	1.80
103410--103523	52	2.2	53	85	6	169	28	14	12	45	1.80
104135--104186	21	2.8	17	76	20	59	48	1	5	44	1.38
110600--110685	43	2.0	43	90	0	136	44	11	15	29	1.81
116296--116337	23	1.9	23	85	9	61	54	0	2	42	1.13
116431--116463	2	16.5	2	100	0	66	48	0	0	51	1.00
116996--117088	21	4.5	21	75	4	91	39	17	24	18	1.91
116996--117088	41	2.3	41	96	0	177	39	17	24	18	1.91
117669--117749	19	4.5	19	71	16	64	48	24	16	11	1.78
117745--117853	19	5.7	19	93	2	173	10	18	22	48	1.78
117836--117923	33	2.6	33	90	1	131	12	25	23	38	1.90
117888--117948	20	3.1	19	76	17	61	14	24	16	44	1.85
120005--120071	21	3.2	21	66	6	55	23	35	20	19	1.95
119949--120071	42	2.9	42	80	4	115	23	36	17	22	1.94
121428--121464	14	2.6	14	86	0	56	32	0	21	45	1.52
122995--123019	12	2.1	12	100	0	50	0	28	0	72	0.86
124305--124361	20	2.8	20	94	0	96	38	22	22	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124381--124448	19	3.8	19	83	12	92	13	20	17	48	1.80
126434--126555	19	6.6	19	77	11	101	41	23	20	13	1.88
126568--126623	14	3.6	14	74	21	58	10	16	23	50	1.76
126581--126639	19	3.4	19	73	22	74	13	18	20	47	1.82
126568--126639	33	2.2	33	100	0	144	12	18	22	47	1.81
126624--126678	20	2.8	19	83	8	65	16	23	23	36	1.94
127160--127204	18	2.5	18	88	0	72	13	15	44	26	1.83
128504--128556	20	2.7	19	80	5	61	47	22	16	13	1.82
128787--128829	21	2.0	21	90	0	68	20	16	41	20	1.90
129023--129068	19	2.4	19	92	0	74	23	19	28	28	1.98
129054--129115	20	3.0	21	73	4	63	19	17	19	43	1.88
129121--129190	20	3.5	20	78	0	86	12	24	21	41	1.88
129099--129190	40	2.2	42	92	3	152	14	26	19	40	1.89

Tables:   1

The End!