Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002135.1 Hibiscus syriacus cultivar Beakdansim tig00004368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145433

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1173--1220
19
2.5
20
86
6
71
41
20
22
14
1.89
5599--5694
7
13.6
7
70
12
54
75
0
16
8
1.04
5606--5646
10
3.9
10
90
9
64
78
0
14
7
0.96
7881--8061
36
5.0
36
86
5
258
33
21
22
22
1.97
8387--8488
42
2.5
41
81
1
123
24
21
22
31
1.98
8065--9763
205
8.2
205
91
3
2573
31
16
20
31
1.95
8810--8907
42
2.3
42
85
0
133
23
26
20
29
1.99
9011--9112
42
2.5
41
81
1
123
25
22
21
30
1.99
8065--9763
624
2.7
623
92
2
2745
31
16
20
31
1.95
9224--9317
42
2.3
41
84
1
125
23
22
23
30
1.99
9421--9533
42
2.7
42
81
2
138
24
23
22
29
1.99
9636--9708
20
3.5
20
66
14
58
21
23
21
32
1.98
9640--9737
42
2.3
42
96
0
178
21
24
21
32
1.98
15721--15886
57
2.9
58
87
3
221
24
9
20
45
1.81
21167--21215
24
2.1
24
96
3
91
24
4
14
57
1.55
23721--23783
2
31.5
2
100
0
126
50
0
0
49
1.00
24034--24068
16
2.2
16
94
0
61
34
22
0
42
1.54
26746--26785
17
2.2
20
86
13
59
25
0
2
72
0.97
28175--28321
64
2.3
64
75
11
140
36
19
17
25
1.94
28706--28786
29
2.8
29
88
3
128
46
16
19
17
1.84
32813--32951
29
4.8
29
92
1
235
45
15
21
17
1.85
34624--34817
105
1.9
104
93
1
334
36
23
20
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47407--47481
30
2.6
30
93
4
127
49
10
9
30
1.69
48227--48276
25
2.0
25
100
0
100
28
12
12
48
1.76
51151--51187
2
18.5
2
100
0
74
51
0
0
48
1.00
54162--54186
3
8.3
3
100
0
50
0
32
0
68
0.90
54279--54308
11
2.7
11
94
0
51
13
26
13
46
1.80
58309--58333
11
2.3
11
100
0
50
24
28
20
28
1.99
59783--59823
5
8.2
5
97
0
55
12
60
0
26
1.31
66042--66090
16
2.9
17
79
11
57
53
2
0
44
1.12
82057--82096
20
2.0
20
100
0
80
25
15
10
50
1.74
82464--82509
21
2.2
20
88
3
65
34
0
0
65
0.93
82461--82513
11
4.8
12
78
17
53
35
0
0
64
0.94
101003--101035
15
2.2
15
100
0
66
24
9
33
33
1.87
101230--101266
2
18.5
2
100
0
74
48
0
0
51
1.00
102677--102741
33
2.0
33
96
0
121
46
18
6
29
1.73
107337--107381
18
2.5
18
85
0
63
37
4
13
44
1.64
112716--112765
24
2.1
24
88
7
75
58
14
2
26
1.47
116951--116990
21
1.9
21
89
0
62
10
25
40
25
1.86
123518--123559
18
2.4
18
88
4
59
2
14
0
83
0.75
124712--124754
14
3.0
15
83
10
54
76
6
0
16
0.99
127929--127978
24
2.1
24
88
7
75
58
14
2
26
1.47
131271--131319
2
24.5
2
100
0
98
51
0
0
48
1.00
132863--132924
30
2.1
30
90
0
97
37
24
9
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145289--145431
71
2.0
71
80
9
157
52
10
11
25
1.69

Tables:   1

The End!