Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002136.1 Hibiscus syriacus cultivar Beakdansim tig00004370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124423
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:5288 original size:2 final size:2
Alignment explanation
Indices: 5281--5305 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5271 ACTGTTCCAG
5281 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
5306 TCATTTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6816 original size:22 final size:22
Alignment explanation
Indices: 6789--6833 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
6779 TTATATATAT
6789 TATATATATATATATTAATATTTG
1 TATATATATAT-TATTAA-ATTTG
*
6813 TATATATTTATTATTAAATTT
1 TATATATATATTATTAAATTT
6834 AAGCTAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TATATATATATTATTAAATTTG
Found at i:11865 original size:17 final size:17
Alignment explanation
Indices: 11834--11868 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11824 CCTGAGTCAT
11834 AATATAATAATTATTTA
1 AATATAATAATTATTTA
11851 AATA-AATAATATATTTA
1 AATATAATAAT-TATTTA
11868 A
1 A
11869 TATCTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AATATAATAATTATTTA
Found at i:11870 original size:16 final size:16
Alignment explanation
Indices: 11833--11871 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
11823 CCCTGAGTCA
11833 TAATATAATAATTATT
1 TAATATAATAATTATT
11849 TAA-ATAAATAATATATT
1 TAATAT-AATAAT-TATT
11866 TAATAT
1 TAATAT
11872 CTAAATTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 2 0.10
16 9 0.45
17 7 0.35
18 2 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATATAATAATTATT
Found at i:11876 original size:24 final size:24
Alignment explanation
Indices: 11832--11877 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
11822 ACCCTGAGTC
*
11832 ATAATATAATAATTATTTAAATAA
1 ATAATATAATAATTATCTAAATAA
*
11856 ATAATATATTTAA-TATCTAAAT
1 ATAATATA-ATAATTATCTAAAT
11878 TATCAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATAATATAATAATTATCTAAATAA
Found at i:13804 original size:95 final size:95
Alignment explanation
Indices: 13699--13873 Score: 341
Period size: 95 Copynumber: 1.8 Consensus size: 95
13689 GTTTTATTAA
*
13699 ATTTTAAATATAATTAGGTTTATATATGAATGGAATAATTATATGGTTTTTATCTAGATATGTAT
1 ATTTTAAATATAATTAGGTTTATATATGAATGGAATAATTATATGGTTTTCATCTAGATATGTAT
13764 CATTTGAAATAATTTTTTAATGTCACATTT
66 CATTTGAAATAATTTTTTAATGTCACATTT
13794 ATTTTAAATATAATTAGGTTTATATATGAATGGAATAATTATATGGTTTTCATCTAGATATGTAT
1 ATTTTAAATATAATTAGGTTTATATATGAATGGAATAATTATATGGTTTTCATCTAGATATGTAT
13859 CATTTGAAATAATTT
66 CATTTGAAATAATTT
13874 ATCATTTGAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 79 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (95 bp):
ATTTTAAATATAATTAGGTTTATATATGAATGGAATAATTATATGGTTTTCATCTAGATATGTAT
CATTTGAAATAATTTTTTAATGTCACATTT
Found at i:14637 original size:12 final size:12
Alignment explanation
Indices: 14620--14648 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14610 TGTCAATCCA
14620 TCTAATTTTGCT
1 TCTAATTTTGCT
14632 TCTAATTTTGCT
1 TCTAATTTTGCT
14644 TCTAA
1 TCTAA
14649 AATTATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (12 bp):
TCTAATTTTGCT
Found at i:17059 original size:4 final size:4
Alignment explanation
Indices: 17050--17085 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
17040 TTTGCTTTGC
17050 TTCT TTCT TTCT TTCT TTCT TTCT TT-T TT-T TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
17086 TTGTAGAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 6 0.19
4 25 0.81
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (4 bp):
TTCT
Found at i:21577 original size:15 final size:17
Alignment explanation
Indices: 21550--21582 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
21540 TTTCTTCATT
21550 TTTCAACATTAGT-AAA
1 TTTCAACATTAGTCAAA
21566 TTTCAA-ATTAGTCAAA
1 TTTCAACATTAGTCAAA
21582 T
1 T
21583 AATAATAGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (17 bp):
TTTCAACATTAGTCAAA
Found at i:24872 original size:15 final size:15
Alignment explanation
Indices: 24850--24886 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
24840 AGACATTACC
*
24850 CCCGCCCCGCATCCG
1 CCCGCCCCACATCCG
*
24865 CTCGCCCCACATCCG
1 CCCGCCCCACATCCG
24880 CCCGCCC
1 CCCGCCC
24887 AGCTAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.68, G:0.16, T:0.08
Consensus pattern (15 bp):
CCCGCCCCACATCCG
Found at i:32573 original size:20 final size:19
Alignment explanation
Indices: 32537--32578 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
32527 CCAGCCATTC
32537 ATATTTTAAATTAAATAAAT
1 ATATTTTAAATTAAAT-AAT
*
32557 ATATTTTGAA-TATAATAAT
1 ATATTTTAAATTA-AATAAT
32576 ATA
1 ATA
32579 ACAATATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATATTTTAAATTAAATAAT
Found at i:47596 original size:185 final size:189
Alignment explanation
Indices: 47239--47619 Score: 533
Period size: 198 Copynumber: 2.0 Consensus size: 189
47229 AATTTTAAAT
* *
47239 ATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTAATAATTTA
1 ATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACTCAATTAATAATTTA
* *
47304 AGATCCAATAAATTTTAAACCTAAATCAATATTAATTAATTAAAAATTTTATATAAATTTTTTTT
66 AGATCCAATAAATTTTAAACATAAATCAATATTAATTAATT--AAA---TATATAAA----TTTA
47369 ATATAAAAAATTTATTTTATAATATATATTATTTAAATTAATT-GTAAA-TATTTTTTTGAATTA
122 ATATAAAAAATTTATTTTATAATATATATTATTTAAATTAATTAG-AAACTATTTTTTT-AATTA
47432 AAAAA
185 AAAAA
47437 ATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACTCAATTAATAATTTA
1 ATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACTCAATTAATAATTTA
* * *
47502 AGATTCAATAACTTTTAAACATAAATCAATATTAATTAATT-AA-A-A-AAA-TTAATATAAAAT
66 AGATCCAATAAATTTTAAACATAAATCAATATTAATTAATTAAATATATAAATTTAATATAAAAA
*
47562 TTTTATTTTATAATTATATATTATTTAAATTAATTAGAAACTATTTTTTTAATTAAAA
131 ATTTATTTTATAA-TATATATTATTTAAATTAATTAGAAACTATTTTTTTAATTAAAA
47620 GCATTTAATT
Statistics
Matches: 172, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
184 22 0.13
185 32 0.19
186 10 0.06
189 3 0.02
190 1 0.01
191 1 0.01
195 2 0.01
198 101 0.59
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.42
Consensus pattern (189 bp):
ATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACTCAATTAATAATTTA
AGATCCAATAAATTTTAAACATAAATCAATATTAATTAATTAAATATATAAATTTAATATAAAAA
ATTTATTTTATAATATATATTATTTAAATTAATTAGAAACTATTTTTTTAATTAAAAAA
Found at i:48814 original size:17 final size:17
Alignment explanation
Indices: 48771--48822 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
48761 GATACAGTAG
*
48771 AAACTCTTTAAATTAAT
1 AAACTCTATAAATTAAT
**
48788 --ACTCGGTAAATTAAT
1 AAACTCTATAAATTAAT
*
48803 AAACTCTATAAAATAAT
1 AAACTCTATAAATTAAT
48820 AAA
1 AAA
48823 TTTGTCCGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (17 bp):
AAACTCTATAAATTAAT
Found at i:50513 original size:16 final size:16
Alignment explanation
Indices: 50487--50529 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
50477 ATGAGCAATG
* *
50487 AGCATCGAGTTTAATT
1 AGCAACGAGTTTAATA
* *
50503 AGTAACGAGTTTTATA
1 AGCAACGAGTTTAATA
50519 AGCAACGAGTT
1 AGCAACGAGTT
50530 GAGCAACAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (16 bp):
AGCAACGAGTTTAATA
Found at i:54008 original size:55 final size:55
Alignment explanation
Indices: 53924--54034 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
53914 CCGCTTCTTG
*
53924 GAATTGGAAACAGATAATCTCGAGGTCCGCTTCGTAGCCTCATCTAACTAGACAA
1 GAATTGGAAACAGATAATCTCGAGGTCCGCTTCGTAGCCTCATCTAACAAGACAA
*
53979 GAATTGGAAACAGATAATCTCGAGGTCCGCTTCGTGGCCTCATCTAACAAGACAA
1 GAATTGGAAACAGATAATCTCGAGGTCCGCTTCGTAGCCTCATCTAACAAGACAA
54034 G
1 G
54035 CTGATTACTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (55 bp):
GAATTGGAAACAGATAATCTCGAGGTCCGCTTCGTAGCCTCATCTAACAAGACAA
Found at i:59440 original size:43 final size:43
Alignment explanation
Indices: 59386--59471 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
59376 CTGAAAAATA
* *
59386 TACATATAAGAGGATGCCTCTACAAATTTTAATGCAATATTAG
1 TACATAAAAGAGGATGCCTCTACAAATTTAAATGCAATATTAG
59429 TACATAAAAGAGGATGCCTCTACAAATTTAAATGCAATATTAG
1 TACATAAAAGAGGATGCCTCTACAAATTTAAATGCAATATTAG
59472 CTTTTTGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (43 bp):
TACATAAAAGAGGATGCCTCTACAAATTTAAATGCAATATTAG
Found at i:63308 original size:2 final size:2
Alignment explanation
Indices: 63298--63346 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
63288 ACACACACAC
*
63298 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63340 AG AG AG A
1 AG AG AG A
63347 ATAATTTATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:64023 original size:42 final size:44
Alignment explanation
Indices: 63957--64045 Score: 137
Period size: 42 Copynumber: 2.1 Consensus size: 44
63947 AATGCATTTT
*
63957 GGGAAATAGCAAGGAGAAGAGAAAATGAAGGAAAATGCGAGAAA
1 GGGAAATAGCAAGGAGAAGAGAAAATGAAAGAAAATGCGAGAAA
* *
64001 GGGAAATAGTAA-GA-AAGAGAAAATGAAAGAAAATGCGTGAAA
1 GGGAAATAGCAAGGAGAAGAGAAAATGAAAGAAAATGCGAGAAA
64043 GGG
1 GGG
64046 CAATGGATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
42 29 0.69
43 2 0.05
44 11 0.26
ACGTcount: A:0.54, C:0.03, G:0.34, T:0.09
Consensus pattern (44 bp):
GGGAAATAGCAAGGAGAAGAGAAAATGAAAGAAAATGCGAGAAA
Found at i:64508 original size:17 final size:18
Alignment explanation
Indices: 64480--64515 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
64470 CACCCTTAAA
*
64480 ATTTTAAAATTTTTATAT
1 ATTTTAAAATTTATATAT
64498 ATTTT-AAATTTATATAT
1 ATTTTAAAATTTATATAT
64515 A
1 A
64516 AATTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTAAAATTTATATAT
Found at i:69868 original size:23 final size:23
Alignment explanation
Indices: 69842--69889 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
69832 ATAAAGTACA
*
69842 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
69865 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
69888 AT
1 AT
69890 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:70296 original size:21 final size:20
Alignment explanation
Indices: 70266--70319 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
70256 GATAGACACT
*
70266 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
70287 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
70310 TTACATTATA
1 TTACATTATA
70320 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:70307 original size:23 final size:23
Alignment explanation
Indices: 70281--70343 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
70271 ATATAACCAT
70281 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
70304 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
70327 TACCTATTACATCATAT
1 TACCTATTACATTATAT
70344 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:70725 original size:21 final size:20
Alignment explanation
Indices: 70695--70748 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
70685 GATAGACACT
*
70695 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
70716 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
70739 TTACATTATA
1 TTACATTATA
70749 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:70736 original size:23 final size:23
Alignment explanation
Indices: 70710--70772 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
70700 ATATAACCAT
70710 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
70733 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
70756 TACCTATTACATCATAT
1 TACCTATTACATTATAT
70773 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:71165 original size:23 final size:23
Alignment explanation
Indices: 71139--71200 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
71129 ATATAACCAT
71139 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
71162 TACCTATTACA-TATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
71184 TACCTATTACATCATAT
1 TACCTATTACATTATAT
71201 GTTTACCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 19 0.56
23 15 0.44
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.35
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:71233 original size:428 final size:430
Alignment explanation
Indices: 70001--71615 Score: 3193
Period size: 429 Copynumber: 3.8 Consensus size: 430
69991 GGATCGATAC
70001 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
70066 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
70131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
70196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
70261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
70326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
70391 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATAC-TTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
70432 TTTAACAGTGTTTCATG-TTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
70496 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAAT-ATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
70560 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
70625 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
70690 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
70755 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
70820 GATACTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
70860 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
70925 ATTTGATTGTTTTGATATTTTAT-AAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
70989 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
71054 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
71119 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACA-TATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
71183 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
71248 GATACTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
71288 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
71353 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
71418 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
71483 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
71548 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
71613 CTA
326 CTA
71616 ATAGAAAACT
Statistics
Matches: 1180, Mismatches: 0, Indels: 9
0.99 0.00 0.01
Matches are distributed among these distances:
428 286 0.24
429 762 0.65
430 115 0.10
431 17 0.01
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (430 bp):
TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
GATACTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
Found at i:71583 original size:21 final size:20
Alignment explanation
Indices: 71553--71606 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
71543 GATAGACACT
*
71553 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
71574 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
71597 TTACATTATA
1 TTACATTATA
71607 TAAGGGCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:72294 original size:184 final size:184
Alignment explanation
Indices: 71985--72847 Score: 1591
Period size: 184 Copynumber: 4.7 Consensus size: 184
71975 TTTTAAATGG
*
71985 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
*
72050 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
* *
72115 GATGTGTAAAATGTCGACACTTTTTTAAATTGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
72169 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
72234 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
72299 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
72353 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
72418 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
72483 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
72537 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
72602 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
* *
72667 GATGTGTAAAATGTCGACACTTTTTTAAATTGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
72721 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGGTTGTAGACCTAT
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCG--ATA-----TAGGTTGTAGACCTAT
**
72786 TCGCGCATAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTTTATTATAAT
59 TCGCGCATAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAT
72848 ATGTTGAAAG
Statistics
Matches: 664, Mismatches: 8, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
184 585 0.88
186 3 0.00
191 76 0.11
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (184 bp):
TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
GATGTGTAAAATGTCGACACTTTTTTAAATTATATCGACACAATTTTCTTCCAA
Found at i:75004 original size:20 final size:19
Alignment explanation
Indices: 74958--75004 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
74948 TCCGGTATCA
*
74958 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
74977 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
74998 TTTTACC
1 TTTTACC
75005 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:76321 original size:30 final size:29
Alignment explanation
Indices: 76251--76326 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
76241 ATTTTTTATT
*
76251 TAAGTATTTAAAGTATTTTTTAATCAAAA
1 TAAGTATTTAAAGTATTTTTTAACCAAAA
** * *
76280 TAAACACTTAAAGTTATTTTTTAACCAAGA
1 TAAGTATTTAAAG-TATTTTTTAACCAAAA
*
76310 TAAGTATTTAAACTATT
1 TAAGTATTTAAAGTATT
76327 CAAATATTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 14 0.38
30 23 0.62
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (29 bp):
TAAGTATTTAAAGTATTTTTTAACCAAAA
Found at i:79255 original size:24 final size:24
Alignment explanation
Indices: 79201--79257 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
79191 CTGATCTGAA
*
79201 TTCTGATATGGATTTCGTTATGAT
1 TTCTGATATGAATTTCGTTATGAT
* * *
79225 ATATGATATGAA-TTCTGTTTTGAT
1 TTCTGATATGAATTTC-GTTATGAT
79249 TTCTGATAT
1 TTCTGATAT
79258 CTTCGTTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 3 0.12
24 23 0.88
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.51
Consensus pattern (24 bp):
TTCTGATATGAATTTCGTTATGAT
Found at i:88367 original size:50 final size:50
Alignment explanation
Indices: 88309--88435 Score: 150
Period size: 50 Copynumber: 2.5 Consensus size: 50
88299 TTAGCAAGAA
* *
88309 AGCGTGCCCCCTGCACCGCGCTATATGCTGATTTGACGCCACGTGAGTAT
1 AGCGTGCCCCCTGCACCGCGCTATACGCTGATCTGACGCCACGTGAGTAT
* * * *
88359 AGCGTGCCCCCTGTC-CCGCGATATACGGTGATCTGGCGCCACGTGGGTAT
1 AGCGTGCCCCCTG-CACCGCGCTATACGCTGATCTGACGCCACGTGAGTAT
*
88409 AGCGCGCCCCCCTG-ATCCGCGCTATAC
1 AGCGTG-CCCCCTGCA-CCGCGCTATAC
88436 ACCACGTAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
50 47 0.72
51 18 0.28
ACGTcount: A:0.16, C:0.35, G:0.28, T:0.21
Consensus pattern (50 bp):
AGCGTGCCCCCTGCACCGCGCTATACGCTGATCTGACGCCACGTGAGTAT
Found at i:92147 original size:111 final size:111
Alignment explanation
Indices: 91953--92174 Score: 399
Period size: 111 Copynumber: 2.0 Consensus size: 111
91943 ATTACAAAAA
* *
91953 TTAATTCTTAATCTAATAATCATGCAATAAATGAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCAATAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
92018 AATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
*
92064 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCAATAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
92129 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
92175 ATGATTTTCA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.35
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCAATAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:92266 original size:13 final size:14
Alignment explanation
Indices: 92250--92278 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
92240 AAAATATTAA
92250 ATAA-AGTAAAAAC
1 ATAATAGTAAAAAC
92263 ATAATAGTAAAAAC
1 ATAATAGTAAAAAC
92277 AT
1 AT
92279 TATAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
ATAATAGTAAAAAC
Found at i:93209 original size:24 final size:24
Alignment explanation
Indices: 93182--93227 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
93172 ATTTTATGTT
*
93182 AAGA-GATTAATTTTTATAATTTAA
1 AAGACGATTAATTTATA-AATTTAA
*
93206 AAGACGTTTAATTTATAAATTT
1 AAGACGATTAATTTATAAATTT
93228 TTATGAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (24 bp):
AAGACGATTAATTTATAAATTTAA
Found at i:97922 original size:6 final size:6
Alignment explanation
Indices: 97911--97936 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97901 TGTAAAAAAT
97911 AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
97937 AATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:99067 original size:204 final size:204
Alignment explanation
Indices: 98717--99128 Score: 590
Period size: 204 Copynumber: 2.0 Consensus size: 204
98707 TTAAGTTTAG
* * * *
98717 GTGATTACAAAATATTATTGGTTTTAATTACTTTCAACCATTTGACAATGAACGCTCAATCACCC
1 GTGATTACAAAATAGTACTAGTTTTAACTACTTTCAACCATTTGACAATGAACGCTCAATCACCC
* * **
98782 TACTACATTTGCTAATACTCGAATTCGTGATCTCTATTAATAACAACCATTACTTTAACCATTGA
66 TACTACATTCGCTAATACTCGAATTCGTGAACTCTAGGAATAACAACCATTACTTTAACCATTGA
* * * *
98847 GATAATTTGGTTCGTGCAATTTATTAAAAATATGACTAAATTGAGAGAATGTGTAAATAATATAG
131 GATAATTTGGTTCGTGCAATATATTAAAAACATGACTAAATTGAGAGAATATGTAAATAATAAAG
*
98912 ACCAAATAT
196 ACAAAATAT
* * * *
98921 GTGATTACAAAGTAGTACTAGTTTTAACTACTTTCAATCATTTGATAATGAACGCTTAATCACCC
1 GTGATTACAAAATAGTACTAGTTTTAACTACTTTCAACCATTTGACAATGAACGCTCAATCACCC
* ** ** * *
98986 TACTACATTCGTTGGTGTTCTAATTTGTGAACTCTAGGAATAACAACCATTACTTTAACCATTGA
66 TACTACATTCGCTAATACTCGAATTCGTGAACTCTAGGAATAACAACCATTACTTTAACCATTGA
*
99051 GATAATTTGTTTCGTGCAATATATTAAAAACATGACTAAATTGAGAGAATATGTAAATAATAAAG
131 GATAATTTGGTTCGTGCAATATATTAAAAACATGACTAAATTGAGAGAATATGTAAATAATAAAG
*
99116 ACAAAATGT
196 ACAAAATAT
99125 GTGA
1 GTGA
99129 ATATACCAAA
Statistics
Matches: 182, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
204 182 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (204 bp):
GTGATTACAAAATAGTACTAGTTTTAACTACTTTCAACCATTTGACAATGAACGCTCAATCACCC
TACTACATTCGCTAATACTCGAATTCGTGAACTCTAGGAATAACAACCATTACTTTAACCATTGA
GATAATTTGGTTCGTGCAATATATTAAAAACATGACTAAATTGAGAGAATATGTAAATAATAAAG
ACAAAATAT
Found at i:99221 original size:31 final size:31
Alignment explanation
Indices: 99183--99241 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
99173 TGACCACGTC
*
99183 TTAAATAAAAACGAATGTGACCATATATTAT
1 TTAAATAAAAACGAATATGACCATATATTAT
*
99214 TTAAATAAAAACGAATATGACCTTATAT
1 TTAAATAAAAACGAATATGACCATATAT
99242 AAGACATGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.32
Consensus pattern (31 bp):
TTAAATAAAAACGAATATGACCATATATTAT
Found at i:109322 original size:18 final size:19
Alignment explanation
Indices: 109280--109323 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
109270 TTTGGTTCAC
* *
109280 GGAATATAAGATTATTAGT
1 GGAATAAAAGATTATCAGT
109299 GTGAATAAAAGATTATCAG-
1 G-GAATAAAAGATTATCAGT
109318 GGAATA
1 GGAATA
109324 GGATTACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 2 0.09
20 15 0.68
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.30
Consensus pattern (19 bp):
GGAATAAAAGATTATCAGT
Found at i:110958 original size:24 final size:24
Alignment explanation
Indices: 110898--110946 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
110888 AAACACCTTG
110898 AAATAAAAGGAATTAAATTTGCAA
1 AAATAAAAGGAATTAAATTTGCAA
110922 AAATAAAAGGAATTAAATTTGCAA
1 AAATAAAAGGAATTAAATTTGCAA
110946 A
1 A
110947 CATAGCTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.59, C:0.04, G:0.12, T:0.24
Consensus pattern (24 bp):
AAATAAAAGGAATTAAATTTGCAA
Found at i:112937 original size:317 final size:313
Alignment explanation
Indices: 112237--114484 Score: 3519
Period size: 317 Copynumber: 7.1 Consensus size: 313
112227 GTATTGTTTC
*
112237 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
112302 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
*
112367 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGG--CTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* * *
112432 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGG
193 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG
* *
112497 AAGTTGTTTTTTTTTGACAACCA--GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
258 AAGTTG---TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC--TGTCTG
* * * * *
112556 GAGTCCAATATTCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
112621 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
*
112686 GTTGAAATTGGCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
131 GTTGAAATTGGCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
112751 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
195 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
112816 GTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC-GTCTG
260 GTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCTGTCTG
* * * *
112869 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTTTTTTTTTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG----TTTGTTG
* *
112934 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAATCCAATATCCTTCGTTG
62 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
112999 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCAGTCCCTTCGTCGTGA
127 TGAAGTTGAAATTGG--CTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
113064 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
190 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
113129 GAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
255 GAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC--TGTCTG
* *
113190 GAGCCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113255 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
113320 GTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 GTTGAAATTG--GCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* *
113385 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
* *
113450 A-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
259 AGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC--TGTCTG
* * *
113506 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* *
113570 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTAGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * * *
113635 GTTGAAATTGACTCTGAAATCGAGAAATGTTCGTTGACAACCAGCAGTCCCTTCGTCGTGAAGTT
131 GTTGAAATTG--GCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
113700 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
* * *
113765 AGTTGTTTGTTGACAACCACCGGTCCCTTCGTCATGAAGTTGAACTTACGTTGTCTG
259 AGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTT--GCTGTCTG
* *
113822 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAAAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
113887 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
113952 GTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACCAGCGGTCCC-T--TCGTGAAGTT
131 GTTGAAATTG--GCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* * *
114014 GAACTTGCGTTGTCTAGAGT-CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
* * *
114078 A-ATGTTCGTTGACAACCAGCGGTCCCTTCGTAGTGAAGTTGAACTTGCGTTGTCTG
259 AGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC--TGTCTG
*
114134 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* * *
114199 CCAGCGGTCCCTTCCTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
*
114264 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGG--CTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* * *
114329 TGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG
193 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG
*
114394 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTATTGTCTTG
258 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG--CTGTC-TG
* * *
114453 GA-TTCAAGATCCTTCGTTGAGAAGTTGAAATT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
114485 TACTCTCGAG
Statistics
Matches: 1804, Mismatches: 95, Indels: 61
0.92 0.05 0.03
Matches are distributed among these distances:
310 1 0.00
312 192 0.11
313 121 0.07
314 43 0.02
315 201 0.11
316 251 0.14
317 562 0.31
318 226 0.13
319 152 0.08
321 55 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (313 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
GTTGAAATTGGCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
ACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCTGTCTG
Found at i:113081 original size:105 final size:106
Alignment explanation
Indices: 112237--114484 Score: 3688
Period size: 106 Copynumber: 21.3 Consensus size: 106
112227 GTATTGTTTC
*
112237 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
112302 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
112343 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
112408 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
112449 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTTTTTTTTGA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG---TTTGTTGA
*
112514 CAACCA--GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
63 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
112556 GAGTCCAATATTCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
112621 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
112662 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG--CTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
112725 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
112766 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
112831 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC---GTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
112869 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTTTTTTTTTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG----TTTGTTG
*
112934 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
62 ACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
112979 GAATCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113043 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
113084 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
113149 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
113190 GAGCCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113255 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
113296 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
113360 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
113401 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113465 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
113506 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* *
113570 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
113611 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTCGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113675 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
113716 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* * *
113781 CCACCGGTCCCTTCGTCATGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
113822 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAAAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
113887 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
113928 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
113992 CCAGCGGTCCC-T--TCGTGAAGTTGAACTTGCGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
114030 GAGT-CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTCGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
114093 CCAGCGGTCCCTTCGTAGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
114134 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* *
114199 CCAGCGGTCCCTTCCTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
114240 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
114305 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
114346 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
**
114411 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTATTGTCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * *
114453 GA-TTCAAGATCCTTCGTTGAGAAGTTGAAATT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
114485 TACTCTCGAG
Statistics
Matches: 2030, Mismatches: 90, Indels: 44
0.94 0.04 0.02
Matches are distributed among these distances:
101 69 0.03
102 30 0.01
103 56 0.03
104 142 0.07
105 572 0.28
106 963 0.47
107 132 0.07
109 15 0.01
110 51 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:118059 original size:6 final size:6
Alignment explanation
Indices: 118048--118074 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
118038 TAATTGCAAA
118048 AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAA
118075 AACCCGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:123117 original size:31 final size:33
Alignment explanation
Indices: 123074--123138 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
123064 ACAAACATAA
123074 ACCTTAAACACAATTATGACA-GTTAAGTACAG
1 ACCTTAAACACAATTATGACAGGTTAAGTACAG
123106 ACCTT-AACACAATTATGACAGGTTAAGTACAG
1 ACCTTAAACACAATTATGACAGGTTAAGTACAG
123138 A
1 A
123139 AAAATGACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (33 bp):
ACCTTAAACACAATTATGACAGGTTAAGTACAG
Done.