Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002139.1 Hibiscus syriacus cultivar Beakdansim tig00004373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79600

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3321--3346
13
2.0
13
100
0
52
38
0
7
53
1.30
5325--5367
18
2.4
18
80
7
52
74
4
0
20
1.00
6566--6635
24
2.8
25
77
16
74
47
0
4
48
1.21
9567--9616
25
2.0
25
84
7
66
42
0
4
54
1.19
11387--11415
12
2.3
13
94
5
51
34
0
0
65
0.93
11348--11488
67
2.1
68
89
1
212
36
4
8
49
1.55
12482--12523
10
4.2
10
76
11
50
23
38
26
11
1.90
12513--12563
23
2.2
23
85
0
66
27
27
35
9
1.88
12527--12572
23
2.0
23
91
8
76
26
23
39
10
1.88
12633--12692
23
2.6
23
83
0
75
10
35
26
28
1.89
12680--12707
14
2.0
14
100
0
56
7
28
42
21
1.79
13721--13775
12
4.6
12
88
0
83
10
16
49
23
1.77
13827--13863
12
3.0
12
92
4
56
10
16
54
18
1.71
15625--15756
60
2.2
60
82
2
167
34
12
18
34
1.89
30891--30930
21
1.9
21
89
0
62
42
2
12
42
1.56
31546--31609
30
2.1
30
100
0
128
35
12
18
32
1.89
32951--33028
25
3.2
25
76
16
67
41
3
0
55
1.18
33105--33172
19
3.5
19
85
4
82
44
0
0
55
0.99
33101--33210
55
2.0
54
81
8
125
43
0
0
55
1.06
33122--33177
21
2.8
20
89
10
87
44
0
0
55
0.99
33127--33212
21
3.5
23
78
18
86
41
0
1
56
1.06
33159--33206
17
2.8
17
75
12
53
39
0
2
58
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33138--33216
28
2.9
28
78
9
83
41
0
1
56
1.07
39231--39694
231
2.0
231
95
0
838
32
19
19
27
1.96
41298--41332
17
2.1
16
89
5
52
71
0
2
25
1.00
42057--42083
12
2.2
12
100
0
54
29
0
11
59
1.32
43634--43691
15
3.9
14
75
8
53
27
3
6
62
1.37
53283--53406
20
6.2
19
77
12
108
42
23
13
20
1.87
53420--53488
20
3.4
20
92
4
120
44
17
18
18
1.86
53844--53981
20
6.9
20
92
0
222
19
18
15
45
1.85
53868--53996
60
2.2
60
88
2
188
21
17
17
43
1.88
60448--60472
12
2.1
12
100
0
50
16
8
8
68
1.38
62195--62248
12
4.9
11
75
22
51
25
0
3
70
1.04
64775--64809
18
1.9
18
88
11
54
54
5
17
22
1.64
65737--65803
22
3.0
22
100
0
134
19
26
26
26
1.99
68930--68976
21
2.2
22
80
7
60
29
27
27
14
1.96
69561--69595
18
1.9
18
88
11
54
54
5
17
22
1.64
70524--70590
22
3.0
22
100
0
134
19
26
26
26
1.99
78202--78253
22
2.4
21
72
15
52
51
3
0
44
1.19
78644--78712
33
2.1
33
97
0
129
24
21
23
30
1.99

Tables:   1

The End!