genome.fa.s2141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002141.1 Hibiscus syriacus cultivar Beakdansim tig00004375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209361

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553--611	24	2.4	26	76	18	63	27	1	6	64	1.28
841--931	43	2.1	43	86	8	123	58	3	5	32	1.37
5789--5813	2	12.5	2	100	0	50	52	0	0	48	1.00
12395--12427	15	2.1	16	88	5	50	69	0	0	30	0.88
16284--16409	55	2.3	55	91	0	207	40	16	14	28	1.88
21083--21115	14	2.3	15	89	5	50	54	0	0	45	0.99
21080--21117	15	2.5	16	83	12	53	52	0	0	47	1.00
20988--21192	113	1.8	114	82	10	269	46	9	6	38	1.62
21159--21200	20	2.0	21	86	4	59	54	0	2	42	1.13
21156--21203	20	2.5	19	80	6	53	56	0	2	41	1.11
22643--22701	3	19.3	3	75	3	55	62	1	0	35	1.05
51044--51093	14	3.2	16	72	13	50	38	4	0	58	1.17
51105--51147	18	2.4	18	81	18	54	58	2	4	34	1.32
56015--56046	15	2.1	15	100	0	64	50	12	15	21	1.77
56422--56451	11	2.6	11	94	5	51	50	0	0	50	1.00
57572--57639	20	3.4	20	72	6	66	32	17	23	26	1.97
64059--64106	23	2.1	23	84	7	62	62	0	0	37	0.95
64941--64995	27	2.0	27	82	10	67	41	14	12	30	1.83
65493--65535	19	2.3	19	91	0	68	18	20	27	32	1.96
65499--65539	19	2.2	19	100	0	82	14	21	34	29	1.93
73956--74069	24	4.8	24	85	2	113	30	20	21	27	1.98
74029--74071	11	3.8	11	80	17	52	23	20	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74004--74079	23	3.3	23	86	1	89	25	21	23	30	1.99
74029--74079	12	4.5	11	80	7	57	23	21	21	33	1.97
75461--75560	7	14.4	7	85	2	121	20	0	35	45	1.51
76032--76071	21	1.9	21	85	10	55	40	0	2	57	1.12
76024--76079	30	1.9	29	82	7	69	39	1	1	57	1.20
76076--76105	14	2.1	14	93	0	51	43	0	6	50	1.28
77467--77535	20	3.5	20	89	0	102	42	17	20	20	1.90
84507--84581	38	2.0	38	86	0	105	52	10	10	26	1.69
85253--85355	35	3.0	35	92	4	165	22	12	17	47	1.81
87665--88118	228	2.0	225	97	1	863	32	18	17	32	1.94
89503--89544	21	2.0	22	90	4	68	28	38	26	7	1.82
90762--90885	30	4.1	30	94	2	205	20	22	26	29	1.99
96241--96570	162	2.0	162	92	0	561	33	17	24	23	1.96
106401--106447	19	2.3	21	85	10	71	31	0	8	59	1.27
106536--106572	17	2.1	18	95	5	67	56	0	0	43	0.99
107753--107781	14	2.0	15	93	6	51	55	0	0	44	0.99
115502--115574	38	2.0	37	92	7	123	19	31	32	16	1.94
118473--118543	31	2.3	32	80	7	83	19	11	16	52	1.74
119740--119818	31	2.5	31	89	0	122	51	12	11	24	1.72
123158--123204	23	2.0	23	95	0	85	57	6	8	27	1.53
127025--127064	21	1.9	21	90	10	64	52	7	0	40	1.30
136125--136234	35	3.1	34	87	5	148	33	1	22	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138297--138327	2	15.5	2	100	0	62	48	0	0	51	1.00
158249--158275	6	4.5	6	100	0	54	18	14	51	14	1.76
158344--158434	27	3.3	27	82	11	112	24	4	42	28	1.73
158348--158467	27	4.1	28	73	18	102	25	5	40	28	1.76
158509--158624	39	3.0	39	93	0	187	21	8	43	25	1.81
174076--174115	12	3.7	12	75	25	52	30	0	20	50	1.49
174076--174123	20	2.4	20	96	0	87	31	0	16	52	1.45
174545--174642	21	4.7	21	72	15	78	37	21	19	21	1.94
174610--174802	20	9.6	20	84	5	246	34	27	19	18	1.95
175181--175251	33	2.2	33	94	0	124	11	23	16	47	1.79
175331--175407	21	3.7	21	81	6	102	48	16	22	12	1.80
175392--175448	14	3.7	14	75	20	60	43	22	24	8	1.81
175385--175464	33	2.4	33	95	0	142	47	22	21	8	1.78
175509--175573	21	3.1	21	80	4	87	12	26	13	47	1.78
175465--175571	19	5.7	20	75	15	95	12	23	17	46	1.82
177254--177476	93	2.4	93	97	0	428	22	13	18	44	1.85
177592--177647	14	3.7	14	78	17	58	42	25	23	8	1.82
177574--177695	32	3.7	33	90	4	176	45	27	18	9	1.79
177638--177695	19	3.4	19	73	26	74	46	31	15	6	1.72
177691--177849	19	8.6	19	80	7	166	10	19	23	46	1.81
179768--179803	14	2.6	14	95	0	63	33	0	22	44	1.53
179910--179988	19	4.4	19	80	16	105	45	17	22	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180003--180293	53	5.5	53	96	1	523	14	22	16	46	1.84
182588--182612	12	2.1	12	100	0	50	0	28	0	72	0.86
182787--182833	24	2.0	24	87	8	69	38	21	14	25	1.92
183525--183753	20	11.4	20	84	1	226	19	17	25	37	1.93
187925--187969	14	2.9	16	83	12	58	37	0	4	57	1.19
188184--188303	42	2.9	42	89	0	195	17	19	18	45	1.86
188495--188542	22	2.1	22	84	7	60	52	0	0	47	1.00
188651--188695	23	2.0	23	86	0	63	53	2	2	42	1.25
189016--189059	15	3.0	15	76	6	54	31	15	6	45	1.73
189016--189073	29	2.0	28	80	12	64	34	17	5	43	1.71
190075--190149	38	2.0	37	82	5	89	49	4	1	45	1.29
195750--195774	7	3.6	7	100	0	50	0	12	0	88	0.53
200575--200600	2	13.0	2	100	0	52	50	0	50	0	1.00
206439--206485	18	2.5	20	86	13	80	51	0	6	42	1.27
206978--207037	31	1.9	31	96	0	111	23	13	38	25	1.91
207046--207088	22	2.0	22	95	0	77	25	25	32	16	1.96

Tables:   1

The End!