genome.fa.s2142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002142.1 Hibiscus syriacus cultivar Beakdansim tig00004378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103386

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802--849	23	2.1	23	88	0	69	35	12	18	33	1.89
1233--1294	22	2.7	23	85	5	81	38	17	6	37	1.76
1223--1294	23	3.2	23	82	4	83	40	19	5	34	1.75
1692--1778	39	2.2	39	95	0	156	17	13	20	48	1.81
2032--2068	18	2.1	18	89	0	56	51	10	5	32	1.60
2315--2365	25	2.0	25	92	0	84	39	19	7	33	1.81
2641--2703	23	2.7	23	90	0	90	38	19	6	36	1.77
3066--3122	22	2.7	20	75	20	53	38	19	7	35	1.79
2397--3223	428	1.9	425	95	3	1506	39	12	8	39	1.74
5728--6695	198	4.9	199	97	1	1842	30	16	16	36	1.91
5728--6695	397	2.5	395	98	1	1852	30	16	16	36	1.91
6811--6858	19	2.6	19	93	3	80	56	10	2	31	1.45
8745--8809	21	3.1	21	80	6	69	15	29	15	40	1.88
11040--11086	20	2.3	20	89	10	78	17	17	10	55	1.69
11208--11253	20	2.3	20	89	10	76	17	17	10	54	1.70
14443--14483	5	8.2	5	91	0	55	2	56	36	4	1.34
14487--14549	6	10.5	6	98	0	108	3	15	50	30	1.60
20017--20070	5	10.8	5	93	0	54	11	40	38	9	1.73
20015--20070	10	5.6	10	89	0	67	10	41	37	10	1.75
20015--20070	15	3.7	15	85	0	67	10	41	37	10	1.75
20042--20073	5	6.4	5	100	0	64	0	40	40	18	1.51
20071--20161	6	15.2	6	95	0	164	2	16	48	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436--20490	22	2.5	22	75	0	56	29	9	23	38	1.85
23008--23041	15	2.3	15	89	0	50	55	2	0	41	1.15
25570--25626	22	2.6	23	72	8	55	29	10	19	40	1.85
25625--25692	23	3.0	23	82	0	82	19	26	23	30	1.98
30394--30461	23	3.0	23	80	0	82	19	26	23	30	1.98
31934--32004	16	4.1	16	70	24	54	71	1	4	22	1.11
31920--31965	23	2.0	22	83	4	56	71	0	4	23	1.03
41030--41062	14	2.4	14	94	0	57	33	6	6	54	1.50
41036--41104	35	2.0	34	88	8	104	42	1	10	46	1.46
41050--41091	21	2.0	20	90	4	66	42	0	11	45	1.41
41070--41104	14	2.5	14	85	0	52	42	0	11	45	1.40
41253--41300	14	3.4	14	76	2	51	45	0	0	54	0.99
41375--41426	23	2.2	24	82	3	61	48	1	0	50	1.12
41421--41504	26	3.2	26	77	15	84	51	2	1	45	1.22
41417--41536	53	2.3	52	83	9	147	48	2	0	48	1.20
41562--41628	23	3.0	22	80	10	64	47	0	2	49	1.16
41527--41723	83	2.4	82	76	15	176	48	1	2	48	1.22
50478--50517	17	2.4	17	100	0	80	22	5	40	32	1.76
53205--53922	106	6.8	106	93	0	1183	33	24	18	23	1.96
54010--54461	84	5.4	84	85	0	526	29	25	20	25	1.99
58893--58926	16	2.1	16	94	0	59	32	8	26	32	1.87
59677--59708	15	2.1	16	94	5	57	50	18	25	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64493--64527	13	2.7	13	90	0	61	22	34	0	42	1.54
64692--64737	21	2.1	22	88	11	69	32	4	0	63	1.14
70548--70613	28	2.3	29	84	5	80	18	15	16	50	1.79
71251--71310	29	2.1	29	87	6	86	53	18	13	15	1.73
71380--71493	50	2.2	53	83	7	137	44	9	9	35	1.70
88223--88283	20	2.9	21	80	11	54	24	31	26	18	1.97
88266--88305	21	1.9	21	89	0	62	25	40	25	10	1.86
89928--89961	12	2.8	12	90	4	50	32	29	38	0	1.58
91789--91846	21	2.8	21	97	0	107	24	17	36	22	1.95
91928--91987	30	2.0	30	96	0	111	45	20	5	30	1.72
93264--93311	19	2.5	20	82	3	62	29	12	6	52	1.63
94786--94844	30	2.0	30	96	0	109	45	18	5	30	1.71
102938--103014	37	2.1	37	85	4	102	48	1	2	48	1.23

Tables:   1

The End!