genome.fa.s2143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002143.1 Hibiscus syriacus cultivar Beakdansim tig00004382_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103223

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11362--11437	38	2.0	38	92	0	125	46	11	14	27	1.80
21965--22037	36	2.1	35	84	2	92	28	23	21	26	1.99
24213--24237	3	8.3	3	100	0	50	32	0	68	0	0.90
37689--37723	3	11.7	3	93	0	61	31	0	2	65	1.07
56241--56283	21	2.0	21	86	8	61	2	34	18	44	1.63
61178--61240	31	2.3	26	73	23	65	55	0	4	39	1.21
61186--61417	30	7.8	30	74	11	156	55	1	6	36	1.35
61446--61507	28	2.5	23	78	17	61	53	0	4	41	1.22
61456--61540	31	2.8	31	82	10	104	56	1	7	35	1.34
61446--61519	28	3.0	23	71	21	60	54	0	6	39	1.27
61467--61537	28	2.4	28	86	6	88	56	1	7	35	1.35
61731--61835	47	2.2	47	94	0	183	48	14	6	30	1.69
62386--62443	24	2.4	24	91	2	89	63	1	0	34	1.04
62709--62772	27	2.4	28	76	5	69	67	3	0	29	1.06
62727--62776	21	2.3	21	86	13	66	64	0	0	36	0.94
63192--63282	41	2.2	42	86	2	130	27	8	17	46	1.78
69608--70182	143	4.0	141	81	4	595	36	9	17	36	1.82
69602--70182	284	2.0	285	81	4	672	36	9	17	36	1.82
77912--77965	21	2.6	21	93	0	99	20	14	16	48	1.81
80417--80462	21	2.2	21	84	0	56	26	26	17	30	1.97
80447--80551	40	2.6	41	85	8	137	42	24	15	17	1.87
80472--80663	20	9.6	19	74	13	163	40	25	17	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80483--80664	60	3.0	58	81	6	211	41	24	17	17	1.90
80484--80664	40	4.5	40	82	5	195	40	24	17	17	1.90
80447--80663	100	2.2	100	91	0	353	41	24	16	17	1.90
80774--80824	22	2.3	22	93	0	84	21	41	13	23	1.89
81210--81258	20	2.5	20	86	3	64	12	22	20	44	1.84
83409--83462	21	2.4	24	78	18	78	24	27	12	35	1.92
83418--83470	21	2.5	21	96	0	97	26	26	18	28	1.98
83418--83532	21	5.5	21	83	4	88	24	33	19	23	1.97
83418--83532	42	2.8	41	75	9	97	24	33	19	23	1.97
83485--83549	21	3.1	21	80	8	62	21	35	21	21	1.96
84963--84999	14	2.6	14	95	0	65	32	0	18	48	1.49
84909--85065	80	2.0	78	93	2	269	31	1	17	49	1.55
85485--85520	18	2.0	18	94	0	63	16	2	25	55	1.55
87782--87835	24	2.2	24	93	0	90	40	20	18	20	1.91
87782--87849	24	2.8	24	84	0	64	38	20	17	23	1.93
93403--93511	35	3.0	37	89	8	170	44	18	7	30	1.77
93440--93503	20	3.4	20	66	29	59	45	18	6	29	1.74

Tables:   1

The End!