genome.fa.s2145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002145.1 Hibiscus syriacus cultivar Beakdansim tig00004384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85646

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5995--6071	40	1.9	40	84	5	102	37	16	14	31	1.89
7054--7140	25	3.4	25	69	12	61	42	21	9	26	1.83
7039--7144	51	2.1	52	89	1	160	40	19	10	29	1.85
8187--8266	34	2.4	34	97	0	151	36	5	10	48	1.58
16879--16910	16	2.0	17	88	11	50	31	12	9	46	1.73
19006--19030	2	12.5	2	100	0	50	0	48	0	52	1.00
19030--19074	2	22.5	2	100	0	90	48	0	0	51	1.00
22354--22380	3	9.0	3	100	0	54	66	0	33	0	0.92
23549--23725	56	3.2	56	91	0	275	38	11	20	29	1.87
23827--23903	33	2.4	30	80	10	73	59	0	1	38	1.06
23844--23904	15	3.9	15	72	10	50	59	0	1	39	1.08
23845--23910	18	3.9	17	74	21	59	57	0	1	40	1.08
24273--24365	21	4.5	21	78	4	100	39	18	24	17	1.91
24273--24365	41	2.3	41	100	0	186	39	18	24	17	1.91
24292--24426	41	3.3	41	82	6	132	38	20	21	19	1.94
24354--24448	20	4.7	20	80	2	91	34	24	17	23	1.96
25336--25380	21	2.1	21	87	0	63	31	28	24	15	1.96
26774--26873	30	3.3	30	91	2	148	21	22	26	31	1.98
29995--30039	21	2.1	21	87	0	63	31	28	24	15	1.96
30065--30109	22	2.0	22	86	4	63	31	33	26	8	1.87
31321--31422	31	3.3	31	80	10	118	27	18	19	34	1.95
31330--31451	30	4.0	29	74	10	109	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31433--31529	30	3.2	30	91	2	142	20	22	24	31	1.98
34654--34698	21	2.1	21	87	0	63	31	28	24	15	1.96
34724--34768	22	2.0	22	86	4	63	31	33	26	8	1.87
35983--36114	31	4.2	31	79	9	142	25	19	21	33	1.97
36069--36190	30	4.0	29	87	4	118	19	21	26	32	1.97
36096--36192	30	3.2	30	91	2	142	20	22	24	31	1.98
38561--38605	18	2.5	18	92	0	81	28	44	13	13	1.81
39087--39141	20	2.8	20	85	0	74	38	27	20	14	1.91
39126--39181	14	3.7	14	73	17	58	42	30	17	8	1.80
39106--39185	32	2.4	33	89	4	117	41	27	21	10	1.85
39136--39202	19	3.9	18	73	16	70	46	26	17	8	1.78
39183--39251	33	2.1	33	97	0	129	43	21	11	23	1.85
40356--40409	24	2.2	24	90	0	81	24	16	20	38	1.92
40584--40608	12	2.1	12	100	0	50	72	0	28	0	0.86
42904--43034	19	7.7	19	66	23	94	42	19	22	14	1.88
42904--43030	33	3.8	33	88	4	202	42	19	22	14	1.88
42905--43037	66	2.0	66	97	0	248	41	19	22	16	1.90
43030--43073	20	2.2	20	88	4	63	15	15	22	45	1.85
43035--43074	20	2.0	20	95	0	71	12	15	20	52	1.74
43212--43247	14	2.6	14	86	4	56	47	25	0	27	1.52
44293--44376	42	2.0	42	85	0	114	22	16	39	21	1.92
46405--46503	33	3.0	33	89	1	144	39	26	23	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46380--46539	20	8.8	19	74	16	133	43	22	21	11	1.85
46535--46585	19	2.7	19	90	0	75	9	17	25	47	1.78
47138--47190	20	2.7	20	93	0	88	26	20	28	24	1.99
47221--47313	20	4.5	21	78	4	100	17	24	18	39	1.91
47160--47294	41	3.3	41	83	4	139	19	21	21	37	1.94
47221--47313	41	2.3	41	100	0	186	17	24	18	39	1.91
47907--47935	3	9.7	3	100	0	58	34	31	34	0	1.58
56535--56577	20	2.1	21	86	4	61	72	0	2	25	0.97
60722--60750	14	2.1	14	100	0	58	65	0	34	0	0.93
60721--60757	19	2.1	19	90	10	60	64	0	35	0	0.94
66006--66073	34	2.0	34	97	0	127	17	13	20	48	1.80
67424--67485	21	2.9	21	72	11	63	64	0	1	33	1.03
67972--68022	15	3.2	17	71	23	56	37	19	0	43	1.51
72770--72820	21	2.4	22	83	9	70	50	13	11	23	1.74

Tables:   1

The End!