genome.fa.s2146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002146.1 Hibiscus syriacus cultivar Beakdansim tig00004385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60365

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279--4317	19	2.2	18	86	9	53	76	2	5	15	1.06
5265--5371	36	3.0	36	95	2	198	42	11	27	19	1.85
5290--5348	20	3.2	20	63	22	56	40	10	27	22	1.85
14487--14531	21	2.1	21	95	0	81	62	0	0	37	0.96
15472--15517	20	2.2	20	81	14	58	39	2	2	56	1.24
15477--15517	19	2.1	20	90	4	66	41	0	2	56	1.13
15832--15882	17	2.9	17	83	16	68	47	5	1	45	1.38
15832--15888	17	3.2	18	77	20	57	49	5	5	40	1.48
16030--16067	17	2.2	18	85	4	51	36	0	0	63	0.95
16021--16075	20	2.7	21	73	18	53	38	0	0	61	0.96
16343--16428	35	2.5	35	84	0	100	40	20	1	37	1.61
16397--16439	21	2.0	21	100	0	86	46	13	0	39	1.44
16558--16591	16	2.0	18	88	11	54	26	2	5	64	1.30
23303--23385	21	3.8	22	81	7	89	21	36	24	18	1.95
23301--23363	21	2.9	21	88	4	90	20	34	25	19	1.96
27625--27687	19	3.3	18	71	8	54	50	1	3	44	1.27
27835--27917	23	3.6	23	78	13	82	46	1	1	50	1.16
27807--27911	52	2.0	53	85	10	144	48	0	0	49	1.14
27818--27926	29	3.9	29	72	21	90	49	0	0	48	1.13
27900--27940	11	3.7	11	83	9	57	48	0	0	51	1.00
37676--37734	13	4.7	13	76	23	72	6	6	23	62	1.44
37676--37755	24	3.2	24	87	7	99	8	8	21	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37684--37757	14	5.9	14	64	29	51	8	9	20	62	1.51
38023--38288	33	7.8	33	80	7	217	37	18	27	16	1.92
38218--38356	75	1.9	75	86	3	199	39	16	28	15	1.89
51057--51113	23	2.5	23	79	0	69	33	14	10	42	1.79
51373--51427	27	2.0	28	82	3	67	40	9	0	50	1.34
59790--59828	14	2.8	14	92	0	60	10	10	17	61	1.55
59798--59854	24	2.4	24	84	0	69	10	12	17	59	1.60

Tables:   1

The End!