genome.fa.s2147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002147.1 Hibiscus syriacus cultivar Beakdansim tig00004386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128196

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863--1893	8	3.9	8	95	0	53	64	19	0	16	1.29
1942--1990	22	2.2	22	96	0	89	38	14	2	44	1.56
1934--2059	30	4.4	30	74	21	103	46	10	0	42	1.43
1940--2020	22	3.3	22	68	23	63	41	12	1	44	1.50
7260--7332	35	2.1	35	97	2	139	41	45	0	13	1.44
13533--13593	30	2.0	30	96	0	113	45	22	13	18	1.83
21282--21309	6	4.7	6	100	0	56	35	28	17	17	1.93
31824--31869	20	2.3	19	89	10	74	56	10	15	17	1.67
31611--32083	181	2.6	182	86	0	633	42	13	15	27	1.85
32013--32055	20	2.3	19	88	11	63	51	11	16	20	1.75
34275--34339	21	3.1	21	93	0	103	41	10	30	16	1.83
34373--34438	33	2.0	33	93	0	114	30	0	46	22	1.52
35634--35658	4	6.2	4	100	0	50	24	0	28	48	1.52
36235--36283	19	2.6	19	96	0	89	32	2	10	55	1.45
36517--38079	200	7.8	200	94	0	2718	36	14	18	30	1.91
36517--38079	599	2.6	599	97	0	2912	36	14	18	30	1.91
39316--40552	183	6.8	183	95	0	2231	35	14	16	32	1.89
43013--43077	25	2.6	25	95	0	121	38	12	13	35	1.83
43362--43405	22	2.0	21	82	8	52	38	9	11	40	1.73
43423--43495	23	3.2	23	90	0	110	35	5	20	38	1.76
43913--43985	23	3.2	23	88	0	110	35	5	20	38	1.76
43077--44876	489	3.7	489	96	0	3262	41	7	10	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402--44474	23	3.2	23	84	7	94	35	4	19	41	1.70
46593--46685	21	4.5	21	78	4	100	39	18	24	17	1.91
46593--46685	41	2.3	41	100	0	186	39	18	24	17	1.91
46726--46767	20	2.1	20	90	0	66	26	26	16	30	1.97
47286--47352	19	3.5	19	81	2	80	47	23	16	11	1.80
47348--47551	19	11.1	19	78	13	203	11	21	22	44	1.84
47348--47551	33	5.6	38	80	10	203	11	21	22	44	1.84
47494--47551	20	2.9	20	80	10	64	13	24	18	43	1.87
49548--49670	42	2.9	42	80	2	122	22	36	17	22	1.95
49604--49670	21	3.2	21	66	6	55	23	35	20	19	1.95
51026--51061	14	2.6	14	95	0	63	30	0	25	44	1.54
51243--51369	33	3.9	32	81	8	166	16	22	17	43	1.88
51236--51368	66	2.0	66	92	0	221	18	22	17	42	1.89
53641--53665	12	2.1	12	100	0	50	0	28	0	72	0.86
53839--53892	24	2.2	24	90	0	81	38	20	16	24	1.92
54611--54645	18	1.9	18	94	0	61	28	22	28	20	1.98
54926--54983	20	2.9	20	92	0	89	39	22	20	17	1.92
55000--55072	14	4.5	15	74	22	60	13	20	19	46	1.83
55015--55062	19	2.6	19	96	3	89	14	20	16	47	1.82
57223--57291	19	3.5	19	74	18	68	37	24	23	14	1.92
57223--57279	22	2.8	20	80	17	64	35	24	24	15	1.95
57280--57336	14	3.9	14	79	20	71	47	26	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57264--57340	31	2.4	32	93	4	129	45	24	19	10	1.81
57280--57351	14	4.5	17	74	22	68	47	27	16	8	1.75
57347--57462	19	6.6	19	68	17	65	12	20	22	43	1.86
57369--57426	14	3.9	14	77	16	62	10	15	24	50	1.75
57352--57442	32	2.8	33	93	3	157	12	17	21	48	1.80
57427--57470	20	2.3	19	88	4	61	18	25	20	36	1.95
57436--57481	20	2.3	20	84	0	56	17	21	23	36	1.94
57954--57998	18	2.5	18	88	0	72	13	15	44	26	1.83
59288--59325	20	1.9	20	88	0	58	50	21	15	13	1.78
59352--59402	19	2.7	19	100	0	102	9	21	27	41	1.84
59608--59651	22	2.0	22	95	0	79	18	15	45	20	1.85
59839--59932	20	4.7	20	80	2	89	23	18	24	34	1.96
59819--59933	20	5.7	20	78	5	88	23	17	23	35	1.95
59922--60014	20	4.5	21	78	4	100	17	24	18	39	1.91
59861--59995	41	3.3	41	82	4	139	19	21	20	38	1.94
59922--60014	41	2.3	41	100	0	186	17	24	18	39	1.91
63597--63641	21	2.1	21	84	8	56	40	11	2	46	1.52
71229--71276	19	2.5	19	80	9	53	68	8	16	6	1.35
72020--72253	127	1.8	127	83	1	308	36	12	11	39	1.79
73196--73441	135	1.8	134	89	0	384	23	17	29	28	1.97
73197--73466	45	6.0	45	86	0	326	24	18	29	28	1.98
85689--85778	29	3.0	29	76	9	83	32	14	6	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88759--89187	143	3.0	143	92	1	709	25	15	17	41	1.89
99307--99331	4	6.2	4	100	0	50	24	0	24	52	1.48
112199--112244	24	1.9	24	90	0	74	4	39	8	47	1.54
117332--117377	24	1.9	24	90	0	74	2	41	8	47	1.46

Tables:   1

The End!