Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002148.1 Hibiscus syriacus cultivar Beakdansim tig00004389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85529

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5848--5928
21
3.9
21
73
12
76
46
17
33
2
1.61
6383--6553
43
4.0
43
78
6
186
31
22
17
28
1.97
6348--6595
129
1.9
129
80
6
288
33
23
15
28
1.95
6406--6593
86
2.2
85
83
5
236
30
21
17
30
1.96
6406--6593
43
4.4
43
78
6
175
30
21
17
30
1.96
6820--6859
20
2.0
20
85
9
55
60
2
0
37
1.11
7543--7607
10
6.5
10
73
19
55
58
0
1
40
1.07
7543--7575
12
2.5
13
85
14
50
60
0
3
36
1.12
7550--7608
28
2.0
30
83
6
77
59
0
1
38
1.08
7727--7776
7
7.3
7
81
4
66
44
38
2
16
1.59
7727--7776
14
3.7
13
87
10
73
44
38
2
16
1.59
9238--9301
11
5.6
11
74
7
56
31
25
21
21
1.98
9238--9302
23
2.8
23
92
0
112
30
26
21
21
1.98
9818--10024
61
3.5
59
77
11
219
41
14
13
30
1.84
9817--9912
20
4.8
20
73
16
90
41
16
11
30
1.84
9932--10024
20
4.6
21
77
10
77
41
15
11
31
1.83
9952--10006
21
2.7
19
88
8
74
40
16
16
27
1.89
9815--10035
115
1.9
115
88
3
338
41
14
14
29
1.85
13372--14036
200
3.3
196
78
7
678
40
13
12
33
1.82
14291--14671
118
3.3
117
73
12
340
31
15
13
40
1.85
14262--14871
226
2.8
222
83
5
740
32
14
12
40
1.83
23352--23428
32
2.2
35
82
15
90
64
0
1
33
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23367--23442
20
3.8
20
70
21
52
61
1
1
35
1.12
25577--25642
30
2.2
30
94
0
114
30
25
10
33
1.90
28983--29011
3
9.7
3
100
0
58
68
0
0
31
0.89
30374--30459
40
2.2
40
87
8
124
46
10
12
30
1.76
31904--31988
41
2.0
43
95
4
156
43
10
9
36
1.72
36859--37140
152
1.8
153
93
4
489
29
12
18
39
1.87
45234--45267
17
2.0
17
100
0
68
5
17
11
64
1.45
47774--47809
18
2.0
18
100
0
72
22
22
27
27
1.99
49320--49541
111
2.0
111
96
0
408
45
10
7
36
1.68
49603--49638
17
2.1
18
94
5
65
63
2
5
27
1.30
55632--55673
21
2.0
21
85
0
57
7
28
16
47
1.73
58541--58582
21
2.0
22
90
4
68
52
0
9
38
1.34
60847--60881
18
2.0
18
88
5
54
31
5
45
17
1.71
63841--64040
75
2.6
77
84
6
248
20
23
32
24
1.98
64655--64695
16
2.7
15
85
7
55
56
26
0
17
1.41
66646--66683
20
1.9
20
88
0
58
10
26
36
26
1.89
66666--66726
20
2.9
21
85
7
70
16
26
36
21
1.94
72488--72685
74
2.6
75
85
4
256
20
23
31
23
1.98
84115--84162
21
2.4
19
80
10
60
64
4
14
16
1.43

Tables:   1

The End!