genome.fa.s2149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002149.1 Hibiscus syriacus cultivar Beakdansim tig00004390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58788

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831--869	20	2.0	20	95	5	71	51	10	0	38	1.36
1052--1094	13	3.3	13	76	0	50	48	9	0	41	1.35
1052--1102	26	2.0	26	84	0	66	49	7	3	39	1.51
2365--2435	23	3.1	23	70	0	70	43	16	12	26	1.84
2365--2453	46	1.9	46	83	0	115	44	14	12	28	1.81
2449--2516	24	2.8	24	88	4	82	61	14	2	20	1.46
2464--2516	24	2.2	24	96	0	97	62	13	0	24	1.31
2973--3043	32	2.2	31	85	9	90	56	1	1	40	1.17
2965--3191	117	1.9	117	100	0	454	46	4	4	44	1.44
3090--3160	32	2.2	31	85	9	90	56	1	1	40	1.17
6650--6684	18	1.9	18	88	0	52	22	14	34	28	1.93
11994--12077	42	2.0	42	80	0	96	35	10	21	32	1.88
26252--26293	20	2.1	20	82	8	50	38	11	7	42	1.69
26452--26492	17	2.4	17	100	0	82	29	36	17	17	1.92
26486--26549	21	3.3	19	71	24	53	21	26	23	28	1.99
26469--26562	38	2.5	38	83	0	134	24	27	21	26	1.99
31963--32011	23	2.1	23	84	0	62	16	16	12	55	1.70
34956--35191	20	11.8	19	67	16	79	33	23	17	25	1.97
35018--35190	20	8.6	20	73	8	145	32	24	18	24	1.97
35018--35169	40	3.8	40	86	3	198	33	23	18	24	1.97
35357--35407	22	2.3	22	93	0	84	19	43	15	21	1.88
35788--35831	19	2.3	19	92	0	70	13	13	25	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35836--35884	20	2.5	20	89	0	71	18	18	26	36	1.94
43831--43877	24	2.0	23	88	12	69	55	4	4	36	1.39
47380--47448	20	3.5	20	89	0	102	33	27	21	17	1.96
47511--47606	34	2.8	34	92	3	149	18	18	25	37	1.94
47544--47614	20	3.8	20	73	21	82	22	18	23	35	1.96
47785--47827	12	3.6	12	87	0	59	16	4	25	53	1.62
47792--47825	6	5.7	6	85	0	50	17	2	20	58	1.51
50085--50138	24	2.2	24	90	0	81	40	20	16	22	1.91
50795--50829	17	2.1	17	88	0	52	25	5	34	34	1.80
50955--51043	41	2.2	41	87	4	126	23	14	26	34	1.94
50977--51044	20	3.3	20	72	11	75	20	16	27	35	1.94
51601--51628	4	7.0	4	100	0	56	0	25	0	75	0.81
58222--58269	23	2.1	23	84	7	62	45	4	0	50	1.21

Tables:   1

The End!