genome.fa.s215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000215.1 Hibiscus syriacus cultivar Beakdansim tig00000383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166501

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9467--9498	15	2.1	15	94	0	55	9	68	0	21	1.17
9464--9500	18	2.1	18	100	0	74	10	67	0	21	1.21
14992--15030	11	3.5	11	89	0	60	10	15	64	10	1.50
16054--16102	11	4.5	11	82	5	64	14	2	20	63	1.40
16054--16102	21	2.3	22	89	3	73	14	2	20	63	1.40
18735--18820	31	2.8	31	84	7	104	29	18	13	38	1.90
23291--23382	31	3.0	31	86	0	130	26	16	21	35	1.94
23364--23413	22	2.3	21	83	10	64	26	22	26	26	2.00
25156--25193	11	3.5	11	82	7	51	15	2	21	60	1.47
25156--25201	21	2.2	21	96	0	83	13	2	23	60	1.43
26445--26482	16	2.2	18	90	9	62	50	5	0	44	1.24
27379--27557	85	2.1	85	94	0	313	27	29	6	37	1.81
28919--28960	21	2.0	21	81	9	50	28	0	42	28	1.56
31723--31780	2	29.5	2	96	3	109	48	0	0	51	1.00
32209--32991	4	195.8	4	100	0	1566	25	0	49	25	1.50
40830--40872	22	2.0	22	86	9	61	55	2	0	41	1.12
41037--41356	129	2.4	132	78	7	328	29	17	27	25	1.97
43122--43308	99	1.9	99	87	0	275	29	17	18	34	1.94
47886--47963	32	2.4	32	85	4	104	56	7	14	21	1.63
51798--51845	22	2.1	23	85	11	64	56	2	0	41	1.11
54119--54162	2	22.0	2	100	0	88	50	0	0	50	1.00
54541--54587	19	2.3	20	82	10	60	57	21	10	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54548--54593	19	2.4	19	88	0	65	56	21	8	13	1.63
55207--55276	36	1.9	37	82	2	88	35	11	14	38	1.82
66263--66344	41	2.0	41	100	0	164	34	17	12	36	1.87
66402--66432	2	15.5	2	100	0	62	51	0	0	48	1.00
81021--81131	40	2.8	40	84	2	152	33	25	16	25	1.96
81021--81146	40	3.2	39	80	4	144	32	25	15	26	1.96
82979--83061	30	2.8	30	83	8	91	33	12	7	46	1.68
87081--87112	16	2.0	16	93	0	55	53	0	0	46	1.00
87946--87975	13	2.3	13	100	0	60	66	0	0	33	0.92
98521--98585	31	2.1	31	97	0	121	24	15	12	47	1.79
100221--100277	27	2.1	27	96	0	105	19	10	36	33	1.86
100929--100957	2	14.5	2	100	0	58	51	0	0	48	1.00
105499--105571	36	2.0	36	100	0	146	39	19	21	19	1.92
109720--109809	46	2.0	44	91	4	144	42	10	7	40	1.67
110875--110918	20	2.1	21	83	4	54	59	2	9	29	1.41
114311--114353	6	6.7	6	87	12	59	32	0	0	67	0.91
114296--114353	25	2.3	26	84	3	73	32	0	5	62	1.18
114311--114353	12	3.3	13	90	9	70	32	0	0	67	0.91
117767--119887	211	10.1	211	97	0	3653	33	24	18	23	1.97
120222--120520	84	3.6	84	87	0	393	31	24	20	24	1.98
120152--120520	168	2.2	161	82	5	427	30	24	20	24	1.98
122223--122265	6	6.7	6	87	12	59	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122208--122265	25	2.3	26	84	3	73	32	0	5	62	1.18
122223--122265	12	3.3	13	90	9	70	32	0	0	67	0.91
125325--125404	42	1.9	42	100	0	160	22	12	23	41	1.88
134903--134944	21	2.0	21	95	0	75	26	28	21	23	1.99
135049--135097	19	2.6	19	83	0	71	38	10	8	42	1.68
135162--135221	29	2.0	31	90	6	97	41	16	6	35	1.75
140932--141051	32	3.8	31	80	6	134	35	18	15	31	1.91
140914--141069	64	2.5	64	77	5	181	33	18	16	32	1.93
140883--141069	32	5.9	32	77	8	127	33	19	17	29	1.95
141247--141287	5	8.2	5	100	0	82	41	19	0	39	1.52
141444--141475	10	3.1	11	86	13	50	43	6	0	50	1.27
143805--144189	192	2.0	192	98	0	752	36	13	17	32	1.88
145634--145769	39	3.5	38	79	9	132	20	23	22	33	1.97
148815--148906	39	2.4	39	78	7	98	21	23	21	32	1.98
148843--148954	39	2.9	39	81	4	102	20	23	23	33	1.98
154483--157779	950	3.5	951	93	1	5449	33	17	20	28	1.95
160928--160994	23	2.9	23	77	4	73	19	20	25	34	1.96
161251--161307	28	2.0	28	96	0	105	28	3	15	52	1.59

Tables:   1

The End!