Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002150.1 Hibiscus syriacus cultivar Beakdansim tig00004391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 133868
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:1959 original size:18 final size:18
Alignment explanation
Indices: 1933--1997 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
1923 ATATTTATCT
1933 CGAATGACCACTATGTCC
1 CGAATGACCACTATGTCC
* *
1951 CGAAGGACCACTGATTGTTC
1 CGAATGACCACT-A-TGTCC
1971 CG-A--ACCACTATGTCC
1 CGAATGACCACTATGTCC
1986 CGAATGACCACT
1 CGAATGACCACT
1998 GTTCGAAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
15 6 0.15
16 2 0.05
17 6 0.15
18 17 0.44
19 2 0.05
20 6 0.15
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (18 bp):
CGAATGACCACTATGTCC
Found at i:4803 original size:64 final size:64
Alignment explanation
Indices: 4705--4849 Score: 150
Period size: 64 Copynumber: 2.3 Consensus size: 64
4695 CGATACACAG
* * *
4705 GAAGTGCATCAATGCA-CCCCTTATTAATGGAAACATCGAATGCAATTAGCGCATCGATGCATAA
1 GAAGTGCATCGATGCACCCCCTTA-TAATGAAAACATCGAAGGCAATTAGCGCATCGATGCATAA
* ** * * * **
4769 GAAGTGCATCGATGCACCCCCTTA-AGATTAAAACATCGAAGGTGATTTGTGTATCGATGCATGG
1 GAAGTGCATCGATGCACCCCCTTATA-ATGAAAACATCGAAGGCAATTAGCGCATCGATGCATAA
*
4833 GTAGTGCATCGATGCAC
1 GAAGTGCATCGATGCAC
4850 ATGTTAAGGG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
63 1 0.01
64 59 0.88
65 7 0.10
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (64 bp):
GAAGTGCATCGATGCACCCCCTTATAATGAAAACATCGAAGGCAATTAGCGCATCGATGCATAA
Found at i:10461 original size:25 final size:25
Alignment explanation
Indices: 10419--10481 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
10409 TTAATTAACT
*
10419 TAAATATACATATTTTCTTATAATTA
1 TAAATAT-CAAATTTTCTTATAATTA
*
10445 TAAATATCAAATTTTCTTGTAATTA
1 TAAATATCAAATTTTCTTATAATTA
* *
10470 TAATTATGAAAT
1 TAAATATCAAAT
10482 AGTAATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
25 26 0.79
26 7 0.21
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (25 bp):
TAAATATCAAATTTTCTTATAATTA
Found at i:10967 original size:59 final size:60
Alignment explanation
Indices: 10883--10997 Score: 178
Period size: 59 Copynumber: 1.9 Consensus size: 60
10873 GAATAGTCGG
* * *
10883 GTGATCATTTTGTAACTTCTAATAGTCGAGAGACTCAA-AAAGTAGTACCCTATAGTTGA
1 GTGACCATTTTGTAACTTCTAATAGTCGAGAGACTCAACAAAATAGTAACCTATAGTTGA
* *
10942 GTGACCATTTTGTAACTTTTAATAGTCGAGAGATTCAACAAAATAGTAACCTATAG
1 GTGACCATTTTGTAACTTCTAATAGTCGAGAGACTCAACAAAATAGTAACCTATAG
10998 ACGAGAGACC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 35 0.70
60 15 0.30
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (60 bp):
GTGACCATTTTGTAACTTCTAATAGTCGAGAGACTCAACAAAATAGTAACCTATAGTTGA
Found at i:11020 original size:60 final size:59
Alignment explanation
Indices: 10888--11020 Score: 160
Period size: 59 Copynumber: 2.2 Consensus size: 59
10878 GTCGGGTGAT
* * * * ** *
10888 CATTTTGTAACTTCTAATAGTCGAGAGACTCAAAAAGTAGTACCCTATAGTTGAGTGAC
1 CATTGTGTAACTTTTAATAGTCGAGAGACTCAAAAAATAGTAACCTATAGACGAGAGAC
* *
10947 CATTTTGTAACTTTTAATAGTCGAGAGATTCAACAAAATAGTAACCTATAGACGAGAGAC
1 CATTGTGTAACTTTTAATAGTCGAGAGACTCAA-AAAATAGTAACCTATAGACGAGAGAC
11007 CAATTGTGT-ACTTT
1 C-ATTGTGTAACTTT
11021 ACCTTTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
59 31 0.48
60 27 0.42
61 6 0.09
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (59 bp):
CATTGTGTAACTTTTAATAGTCGAGAGACTCAAAAAATAGTAACCTATAGACGAGAGAC
Found at i:19720 original size:14 final size:16
Alignment explanation
Indices: 19701--19736 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
19691 AATATAATTC
19701 ATATTTTA-TTTT-AA
1 ATATTTTATTTTTAAA
19715 ATATTTTATTTTTAAA
1 ATATTTTATTTTTAAA
19731 ATATTT
1 ATATTT
19737 AACTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.40
15 4 0.20
16 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATATTTTATTTTTAAA
Found at i:22785 original size:351 final size:350
Alignment explanation
Indices: 22208--22908 Score: 1375
Period size: 351 Copynumber: 2.0 Consensus size: 350
22198 TTTCGATAGT
22208 AGATAGATGTTGAATTAATCTCTACAATAAAGGGGCTAAATTGATCCAAAAATAATATTGAAGAG
1 AGATAGATGTTGAATTAATCTCTACAATAAAGGGGCTAAATTGATCCAAAAATAATATTGAAGAG
22273 ACTAAATTGGTACAATAACTTAACTATATAACTAGGTTAATCTTTGTTGGAATTGGAAAAGGGTA
66 ACTAAATTGGTACAATAACTTAACTATATAACTAGGTTAATCTTTGTTGGAATTGGAAAAGGGTA
22338 ATTAAACTATTCAATCTCATGCGAAAACATAATTAAAAAAACGGTTTATAGATGGAGATGATAGG
131 ATTAAACTATTCAATCTCATGCGAAAACATAATTAAAAAAACGGTTTATAGATGGAGATGATAGG
*
22403 TACAAGCAACTAACATTAATAGCCACCTAAAAAGTGAAGAAAACTTGAAATAAATAGAAAATTGA
196 TACAAGCAACTAACATTAATAGCCACCTAAAAAGTGAAGAAAACTTGAAATAAATAGAAAATAGA
*
22468 CATGTGACAATCTCTTTCAATAGTCTTTTTCCTACTAAAGTGAAATGGAACAAACGAGATGTCGA
261 CATGTGACAATCTCTTTCAACAGTCTTTTTCCTACTAAAGTGAAATGGAACAAACGAGATGTCGA
22533 AATCGTGCAATCGATTCATCAAATA
326 AATCGTGCAATCGATTCATCAAATA
22558 AGATAGATGTTGAATTAATCTCTACAATAAAGGGGCTAAATTGATCCAAAAATAATATTGAAGAG
1 AGATAGATGTTGAATTAATCTCTACAATAAAGGGGCTAAATTGATCCAAAAATAATATTGAAGAG
22623 ACTAAATTGGTACAATAACTTAACTATATAACTAGGTTAATCTTTGTTGGAATTTGGAAAAGGGT
66 ACTAAATTGGTACAATAACTTAACTATATAACTAGGTTAATCTTTGTTGGAA-TTGGAAAAGGGT
22688 AATTAAACTATTCAATCTCATGCGAAAACATAATTAAAAAAACGGTTTATAGATGGAGATGATAG
130 AATTAAACTATTCAATCTCATGCGAAAACATAATTAAAAAAACGGTTTATAGATGGAGATGATAG
22753 GTACAAGCAACTAACATTAATAGCCACCTAAAAAGTGAAGAAAACTTGAAATAAATAGAAAATAG
195 GTACAAGCAACTAACATTAATAGCCACCTAAAAAGTGAAGAAAACTTGAAATAAATAGAAAATAG
22818 ACATGTGACAATCTCTTTCAACAGTCTTTTTCCTACTAAAGTGAAATGGAACAAACGAGATGTCG
260 ACATGTGACAATCTCTTTCAACAGTCTTTTTCCTACTAAAGTGAAATGGAACAAACGAGATGTCG
22883 AAATCGTGCAATCGATTCATCAAATA
325 AAATCGTGCAATCGATTCATCAAATA
22909 CTTATTAGAT
Statistics
Matches: 348, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
350 117 0.34
351 231 0.66
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (350 bp):
AGATAGATGTTGAATTAATCTCTACAATAAAGGGGCTAAATTGATCCAAAAATAATATTGAAGAG
ACTAAATTGGTACAATAACTTAACTATATAACTAGGTTAATCTTTGTTGGAATTGGAAAAGGGTA
ATTAAACTATTCAATCTCATGCGAAAACATAATTAAAAAAACGGTTTATAGATGGAGATGATAGG
TACAAGCAACTAACATTAATAGCCACCTAAAAAGTGAAGAAAACTTGAAATAAATAGAAAATAGA
CATGTGACAATCTCTTTCAACAGTCTTTTTCCTACTAAAGTGAAATGGAACAAACGAGATGTCGA
AATCGTGCAATCGATTCATCAAATA
Found at i:28710 original size:23 final size:23
Alignment explanation
Indices: 28675--28747 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
28665 ATACTTTACA
* *
28675 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
28698 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
28721 ATATTAACGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
28744 ATAT
1 ATAT
28748 TTTTACCTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:28748 original size:23 final size:23
Alignment explanation
Indices: 28684--28748 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
28674 AATATAAGCA
*
28684 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATTAACG
28707 CTACCTATTACATTATATTAACG
1 CTACCTATTACATTATATTAACG
*
28730 CTACCTATTACATCATATT
1 CTACCTATTACATTATATT
28749 TTTACCTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (23 bp):
CTACCTATTACATTATATTAACG
Found at i:29200 original size:23 final size:23
Alignment explanation
Indices: 29165--29237 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
29155 ATACTTTACA
*
29165 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
29188 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
29211 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
29234 ATAT
1 ATAT
29238 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:29397 original size:490 final size:490
Alignment explanation
Indices: 28274--30070 Score: 3358
Period size: 490 Copynumber: 3.7 Consensus size: 490
28264 TTATAATATG
* *
28274 TTGAAAGTGTCTATATTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATA-CTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
28339 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
28402 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
28467 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
28532 TACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCAC
260 TACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCAC
28597 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTG-AAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
28661 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATT
390 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATA-T
*
28726 AA-CGCTACCTATTACATCATATTTTTACCTAATATA
454 AAGCGCTACCTATTACATCATATTTTTACCTATTATA
* *
28762 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACATTTTTTAAAGTAATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
28827 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
28892 CAAAAAATTATTTGATTATTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
*
28957 TAACCAAAGATAATAATAAATATGTAATATATAAGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
** *
29022 AATGTAACGTAAAAAATAAATCATTAGACGTATATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACT
*
29087 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
29152 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
29217 GCGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
*
29252 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
29317 TCAATTTTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
29382 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
29447 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* *
29512 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTATTATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACT
*
29577 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
29642 TAGATACTTTACAATATAATCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
29707 GCGCTACCTATTACATCATA-TTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
29741 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
29806 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
29871 C-AAAAA--ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
29933 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
29998 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACT
30063 CAAAAGAT
326 CAAAAGAT
30071 GTACATACCT
Statistics
Matches: 1277, Mismatches: 28, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
486 193 0.15
487 50 0.04
488 20 0.02
489 430 0.34
490 584 0.46
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (490 bp):
TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
GCGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:29690 original size:23 final size:23
Alignment explanation
Indices: 29655--29727 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
29645 ATACTTTACA
* *
29655 ATATAATCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
29678 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
29701 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
29724 ATAT
1 ATAT
29728 TTTACCTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:29951 original size:979 final size:977
Alignment explanation
Indices: 28274--30070 Score: 3370
Period size: 979 Copynumber: 1.8 Consensus size: 977
28264 TTATAATATG
*
28274 TTGAAAGTGTCTATATTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATATCTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
*
28339 TTCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TTCAATTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
28404 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
28469 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
28534 CCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACTC
261 CCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACTC
28599 AAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAGTATGGACACTTTTATAAAAAGGATA
326 AAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAGTATGGACACTTTTATAAAAAGGATA
28664 GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTAAC
391 GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTAAC
28729 GCTACCTATTACATCATATTTTTACCTAATATATTGAAAGTGTCTATACTTTTTATAAAAATGAT
456 GCTACCTATTACATCATATTTTTACCTAATATATTGAAAGTGTCTATACTTTTTATAAAAATGAT
28794 CGATACATTTTTTAAAGTAATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCC
521 CGATACATTTTTTAAAGTAATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCC
28859 ACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTATTTTGATATTTTAT
586 ACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA-TATTTGATTATTTTGATATTTTAT
28924 AAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
650 AAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
* *
28989 AAGTTTATTGTTTTTAATTTAATAATAATATATAATGTAACGTAAAAAATAAATCATTAGACGTA
715 AAGTTTATTGTTTTTAATTTAATAATAATATATAACGTAACGTAAAAAATAAATCATTAGACGCA
29054 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATGAATGTTTTCCACA
780 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATGAATGTTTTCCACA
29119 GTGAAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTA
845 GTGAAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTA
29184 CATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATT
910 CATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATT
29249 ATA
975 ATA
*
29252 TTGAAAGTGTCTATA-CTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATATCTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
29316 TTCAATTTTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
66 TTCAA--TTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
29381 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
129 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
29446 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
* *
29511 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTATTATCTTAAAACTCAC
259 TACCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCAC
*
29576 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATG
324 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTG-AAAAAGTATGGACACTTTTATAAAAAGG
*
29641 ATAGATACTTTACAATATAATCACTACCTATTACATTATATAAACGCTACCTATTACATTATA-T
388 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATT
*
29705 AAGCGCTACCTATTACATCATA-TTTTACCTATTATATTGAAAGTGTCTATACTTTTTATAAAAA
453 AA-CGCTACCTATTACATCATATTTTTACCTAATATATTGAAAGTGTCTATACTTTTTATAAAAA
* *
29769 TGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTT
517 TGATCGATACATTTTTTAAAGTAATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTT
*
29834 TTCCACCTACAATATTAATTTAATAATTTCATTTGCAC-AAAAA-ATTTGATTGTTTTGATATTT
582 TTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATATTTGATTATTTTGATATTT
29897 TATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATA
647 TATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATA
* *
29962 TATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGAC
712 TATAAGTTTATTGTTTTTAATTTAATAATAATATATAACGTAACGTAAAAAATAAATCATTAGAC
*
30027 GCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGAT
777 GCATATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGAT
30071 GTACATACCT
Statistics
Matches: 799, Mismatches: 16, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
976 188 0.24
977 52 0.07
978 20 0.03
979 431 0.54
980 108 0.14
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (977 bp):
TTGAAAGTGTCTATATCTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
TTCAATTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAGTATGGACACTTTTATAAAAAGGATA
GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTAAC
GCTACCTATTACATCATATTTTTACCTAATATATTGAAAGTGTCTATACTTTTTATAAAAATGAT
CGATACATTTTTTAAAGTAATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCC
ACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATATTTGATTATTTTGATATTTTATA
AAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATA
AGTTTATTGTTTTTAATTTAATAATAATATATAACGTAACGTAAAAAATAAATCATTAGACGCAT
ATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATGAATGTTTTCCACAG
TGAAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTAC
ATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTA
TA
Found at i:32873 original size:183 final size:183
Alignment explanation
Indices: 32565--33687 Score: 1930
Period size: 183 Copynumber: 6.1 Consensus size: 183
32555 TACTTAAAAT
*
32565 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * *
32630 TTTATACCAGTTATATTACAAAATTATCTATTACATTATAAATCTGAGTTCCGATGTGTAAATTT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
32695 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
32748 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
32813 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
32878 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
32931 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAAACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
32996 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
33061 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* * *
33114 TACCGACATAATATTAGAAAGTGTCGATATAAGTTGTAGACATATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * * * *
33179 TTTATTCCGGTTATATTACAAAATTATCTATTACATTATAATTATAGGTTCCGATTTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
33244 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
33297 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* *
33362 TTTATACCGGTTATAGTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
33427 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* * *
33480 TTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * *
33545 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTTTTTTCAA
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATG---TGTAAA
* *
33610 --TCGACATTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAG
128 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* *
33664 TACAGACACAATATTAAAAAGTGT
1 TACCGACACAATATTAGAAAGTGT
33688 GAAAACTTTG
Statistics
Matches: 901, Mismatches: 34, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
183 825 0.92
184 72 0.08
186 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (183 bp):
TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
Found at i:34559 original size:3 final size:3
Alignment explanation
Indices: 34551--34607 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
34541 ACTTGTTTGG
* * * * * *
34551 ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTC AGC TTC ATC GTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
34599 ATC ATC ATC
1 ATC ATC ATC
34608 GTCAGCTTCA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.25, C:0.33, G:0.07, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:34608 original size:12 final size:12
Alignment explanation
Indices: 34551--34623 Score: 74
Period size: 12 Copynumber: 6.1 Consensus size: 12
34541 ACTTGTTTGG
*
34551 ATCATCATCATC
1 ATCATCATCGTC
* *
34563 ATCATCGTCATC
1 ATCATCATCGTC
*
34575 ATCTTCATCGTC
1 ATCATCATCGTC
* *
34587 AGCTTCATCGTC
1 ATCATCATCGTC
34599 ATCATCATCGTC
1 ATCATCATCGTC
* *
34611 AGCTTCATCGTC
1 ATCATCATCGTC
34623 A
1 A
34624 GCTTCATCTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 52 1.00
ACGTcount: A:0.23, C:0.33, G:0.10, T:0.34
Consensus pattern (12 bp):
ATCATCATCGTC
Found at i:34624 original size:12 final size:12
Alignment explanation
Indices: 34577--34631 Score: 92
Period size: 12 Copynumber: 4.6 Consensus size: 12
34567 TCGTCATCAT
34577 CTTCATCGTCAG
1 CTTCATCGTCAG
*
34589 CTTCATCGTCAT
1 CTTCATCGTCAG
*
34601 CATCATCGTCAG
1 CTTCATCGTCAG
34613 CTTCATCGTCAG
1 CTTCATCGTCAG
34625 CTTCATC
1 CTTCATC
34632 TTCATTGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.35, G:0.13, T:0.35
Consensus pattern (12 bp):
CTTCATCGTCAG
Found at i:34636 original size:6 final size:6
Alignment explanation
Indices: 34573--34636 Score: 56
Period size: 6 Copynumber: 10.7 Consensus size: 6
34563 ATCATCGTCA
* * * * * * *
34573 TCATCT TCATCG TCAGCT TCATCG TCATCA TCATCG TCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
*
34621 TCAGCT TCATCT TCAT
1 TCATCT TCATCT TCAT
34637 TGACCGCTTG
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.19, C:0.33, G:0.11, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:37159 original size:199 final size:200
Alignment explanation
Indices: 36099--37468 Score: 2508
Period size: 200 Copynumber: 6.9 Consensus size: 200
36089 TTTAAATTAG
* * * *
36099 TATCGACA-AAACATTAAACAGTGTCGATACA-TATTATATACCA-ATTCTCTCATAAAACCGGT
1 TATCGACACAAAC-TAAAAAAGTGTCGACACATTATT-TAGA-CATATTCTCTCATAAAACCGGT
*
36161 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTTTG
63 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
*
36226 GGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
128 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
36291 ACCAAAAA
193 ACCAAAAA
*
36299 TATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
36364 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
36429 TCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
36494 AAAAA
196 AAAAA
* * *
36499 TATCGACACAAACTAAAAAAGTGTCGACATATTATTTAGATATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
36564 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
36629 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
36694 AAAAA
196 AAAAA
36699 TATCGACACAAACT-AAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
36763 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
36827 TCGGCAC-TTTT-TATATGGATCGACACTTTATGGTTGCA-CCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
36889 AAAAA
196 AAAAA
36894 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
36959 CTTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
37023 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
37088 AAAAA
196 AAAAA
*
37093 TATCGACACAAACTAAAAAAGTTTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
37158 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
37223 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCA-CCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
37287 AAAAA
196 AAAAA
*
37292 AATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
37357 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
37422 TCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
37469 GGCCATATTG
Statistics
Matches: 1139, Mismatches: 21, Indels: 20
0.97 0.02 0.02
Matches are distributed among these distances:
195 80 0.07
196 109 0.10
197 8 0.01
198 41 0.04
199 412 0.36
200 481 0.42
201 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (200 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
AAAAA
Found at i:37251 original size:594 final size:597
Alignment explanation
Indices: 36099--37468 Score: 2502
Period size: 594 Copynumber: 2.3 Consensus size: 597
36089 TTTAAATTAG
* * *
36099 TATCGACA-AAACATTAAACAGTGTCGATACA-TATTATATACCA-ATTCTCTCATAAAACCGGT
1 TATCGACACAAAC--TAAAAAGTGTCGACACATTATT-TAGA-CATATTCTCTCATAAAACCGGT
*
36161 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTTTG
62 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
36226 GGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
127 GGATCGACACTTT-TATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
36291 ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAA
191 ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAA
36356 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGT
256 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGT
*
36421 TTTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTTTTCCATTCAT
321 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCAT
* *
36486 TCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACATATTATTTAGATATATTCTCTCA
386 TCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCA
*
36551 TAAAATCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTC
451 TAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTC
36616 GATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCA
516 GATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCA-CCTGTTTTCCA
36681 TTCATTCTGGACCAAAAA
580 TTCATTCTGGACCAAAAA
36699 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
36764 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGAT
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGAT
*
36828 CGGCACTTTT-TATATGGATCGACACTTTATGGTTGCA-CCTGTTTTCCATTCATTCTGGACCAA
131 CGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
*
36891 AAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGT
196 AAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAACCGGT
36956 ATACTTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
261 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
37020 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
*
37085 ACCAAAAATATCGACACAAACTAAAAAAGTTTCGACACATTATTTAGACATATTCTCTCATAAAA
391 ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
37150 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGT
456 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGT
37215 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCTGTTTTCCATTCATT
521 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCTGTTTTCCATTCATT
37280 CTGGACCAAAAA
586 CTGGACCAAAAA
*
37292 AATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACT-AAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
37357 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
65 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
37422 TCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTT
130 TCGACAC-TTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
37469 GGCCATATTG
Statistics
Matches: 748, Mismatches: 14, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
593 42 0.06
594 387 0.52
595 125 0.17
596 31 0.04
597 27 0.04
598 25 0.03
599 95 0.13
600 12 0.02
601 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (597 bp):
TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGAT
CGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
AAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAACCGGT
ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGT
TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCTGTTTTCCATTCATT
CTGGACCAAAAA
Found at i:37598 original size:18 final size:18
Alignment explanation
Indices: 37575--37635 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
37565 TCTCATTCAT
*
37575 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
37593 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
37612 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
37631 AATTA
1 AATTA
37636 ACTCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:37611 original size:19 final size:19
Alignment explanation
Indices: 37587--37635 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
37577 TTATATTCAC
37587 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
37606 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
37625 ATACAAAATTA
1 ATACAAAATTA
37636 ACTCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:39463 original size:33 final size:33
Alignment explanation
Indices: 39426--39491 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
39416 CATCTTAATA
*
39426 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
39459 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
39492 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:39550 original size:21 final size:21
Alignment explanation
Indices: 39525--39589 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
39515 CCCCTTATGC
* *
39525 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
39546 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
39567 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
39588 CT
1 CT
39590 TGATTATCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:41651 original size:24 final size:24
Alignment explanation
Indices: 41614--41666 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
41604 CCGTTCTATC
41614 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
41638 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
41662 TATTT
1 TATTT
41667 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:41828 original size:17 final size:18
Alignment explanation
Indices: 41806--41848 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
41796 ATATATCCGG
41806 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
41823 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
41843 TATCAT
1 TATCAT
41849 ATTTTTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:42037 original size:20 final size:19
Alignment explanation
Indices: 41992--42038 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
41982 TCCGGTAACG
41992 TTTTACCGGTTTTATAATT
1 TTTTACCGGTTTTATAATT
*
42011 TTCTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATAAT-T
42032 TTTTACC
1 TTTTACC
42039 TGGCATATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATAATT
Found at i:42082 original size:181 final size:182
Alignment explanation
Indices: 41778--42250 Score: 691
Period size: 181 Copynumber: 2.6 Consensus size: 182
41768 CGTACTTACG
* * *
41778 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT
* * * *
41843 TATCATATTTTTACATGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
41908 AGG-CGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAC-CTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * *
41959 AAAGTATTGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATAATTTTCTTACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT
** *
42024 TATCATATTTTTACCTGGCATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
* * *
42089 AGGACTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTTTATT
131 AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * *
42141 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCA-TTTCAATACTGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTC-ATACCGGTT
* *
42205 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
42251 AATTTGGATC
Statistics
Matches: 260, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
181 166 0.64
182 94 0.36
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:43736 original size:22 final size:22
Alignment explanation
Indices: 43711--43753 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
43701 CACCTCAACC
43711 CTCTTTCTTTAATCCCAGTGGT
1 CTCTTTCTTTAATCCCAGTGGT
43733 CTCTTTCTTTAATCCCAGTGG
1 CTCTTTCTTTAATCCCAGTGG
43754 GCAGGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (22 bp):
CTCTTTCTTTAATCCCAGTGGT
Found at i:48931 original size:19 final size:19
Alignment explanation
Indices: 48892--48953 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
48882 ATTTCCAAAC
48892 TCATAA-TTTACTTTCAGAT
1 TCATAACTTTACTTT-AGAT
*
48911 TCGTAACTTTACTTTAGAT
1 TCATAACTTTACTTTAGAT
**
48930 TCATGGCTTTACTTTAGAT
1 TCATAACTTTACTTTAGAT
48949 TCATA
1 TCATA
48954 GCCCAAAGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 29 0.78
20 8 0.22
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (19 bp):
TCATAACTTTACTTTAGAT
Found at i:55594 original size:2 final size:2
Alignment explanation
Indices: 55551--55579 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
55541 TACCTTAATA
55551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55580 CGCGTGCGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:55731 original size:2 final size:2
Alignment explanation
Indices: 55724--55750 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
55714 AATGGGTGAG
55724 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
55751 ATTGGAGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57364 original size:23 final size:23
Alignment explanation
Indices: 57338--57381 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
57328 ACCAAAAGAC
57338 AGAGACAAACGTGTCATAAAGGT
1 AGAGACAAACGTGTCATAAAGGT
* *
57361 AGAGATAAATGTGTCATAAAG
1 AGAGACAAACGTGTCATAAAG
57382 ACAAAGAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.20
Consensus pattern (23 bp):
AGAGACAAACGTGTCATAAAGGT
Found at i:58861 original size:12 final size:12
Alignment explanation
Indices: 58844--58869 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
58834 CAAAAGAGAT
58844 ACGTATTATATA
1 ACGTATTATATA
58856 ACGTATTATATA
1 ACGTATTATATA
58868 AC
1 AC
58870 CTACCAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (12 bp):
ACGTATTATATA
Found at i:60034 original size:23 final size:25
Alignment explanation
Indices: 60000--60060 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 25
59990 CTGTTTTATA
60000 TATTA-TAACTTAAAAAATAT-TTT
1 TATTATTAACTTAAAAAATATATTT
**
60023 TA-TATTAACTTATTAAATATATTT
1 TATTATTAACTTAAAAAATATATTT
*
60047 TATTATTTACTTAA
1 TATTATTAACTTAA
60061 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 2 0.06
23 15 0.48
24 5 0.16
25 9 0.29
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTATTAACTTAAAAAATATATTT
Found at i:60348 original size:31 final size:31
Alignment explanation
Indices: 60280--60340 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
60270 ATTCGTTGTG
* *
60280 ACCACATCTTAATTAAATAAAAACGAAAGTA
1 ACCATATCTTAACTAAATAAAAACGAAAGTA
*
60311 ACCATATCTTAACTAAATAAAAATGAAAGT
1 ACCATATCTTAACTAAATAAAAACGAAAGT
60341 GTACATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.25
Consensus pattern (31 bp):
ACCATATCTTAACTAAATAAAAACGAAAGTA
Found at i:62153 original size:52 final size:52
Alignment explanation
Indices: 62096--62198 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 52
62086 GAGTTTTATT
62096 TTCGCAACTCGAA-TTTCGCAACACTAATTACCGATATAGGTAAACACAACTA
1 TTCGCAACTC-AATTTTCGCAACACTAATTACCGATATAGGTAAACACAACTA
* * *
62148 TTCGCAACTCAATTTTCGCAACTCTATTTACCGATATAGGTAGACACAACT
1 TTCGCAACTCAATTTTCGCAACACTAATTACCGATATAGGTAAACACAACT
62199 CAGTTTTCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.04
52 45 0.96
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (52 bp):
TTCGCAACTCAATTTTCGCAACACTAATTACCGATATAGGTAAACACAACTA
Found at i:62455 original size:91 final size:91
Alignment explanation
Indices: 62329--62500 Score: 299
Period size: 91 Copynumber: 1.9 Consensus size: 91
62319 ATGAATAGTT
* *
62329 GTGTTTACTTATATCGATAATTAGAATTGCGAAAACGAAATTCGCGTTGCGATTTTGGAGAATCG
1 GTGTTTACCTATATCGATAATTAGAATTGCGAAAACGAAATTCACGTTGCGATTTTGGAGAATCG
62394 CGTTGCGAATTTGAAAGCTGAGTTGC
66 CGTTGCGAATTTGAAAGCTGAGTTGC
* **
62420 GTGTTTACCTATATCGGTAATTAGCGTTGCGAAAACGAAATTCACGTTGCGATTTTGGAGAATCG
1 GTGTTTACCTATATCGATAATTAGAATTGCGAAAACGAAATTCACGTTGCGATTTTGGAGAATCG
62485 CGTTGCGAATTTGAAA
66 CGTTGCGAATTTGAAA
62501 ATTGTGTTGC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 76 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (91 bp):
GTGTTTACCTATATCGATAATTAGAATTGCGAAAACGAAATTCACGTTGCGATTTTGGAGAATCG
CGTTGCGAATTTGAAAGCTGAGTTGC
Found at i:63124 original size:16 final size:18
Alignment explanation
Indices: 63103--63148 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 18
63093 AAAATTTTAA
*
63103 ATATTTTTTTGAATT-T-
1 ATATTTTTTTAAATTATC
*
63119 ATATTTTTTAAAATTATC
1 ATATTTTTTTAAATTATC
63137 ATATTTTTTTAA
1 ATATTTTTTTAA
63149 CTTTTTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.52
17 1 0.04
18 11 0.44
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
ATATTTTTTTAAATTATC
Found at i:74721 original size:224 final size:225
Alignment explanation
Indices: 74324--74766 Score: 741
Period size: 224 Copynumber: 2.0 Consensus size: 225
74314 GTAAATTAGC
* * *
74324 TATCCTTTTTATAAAAGTGTTCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA-CTTTAGT
**
74389 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
65 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
*
74454 TGTGTAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTGA
130 TGTGTAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAATAAATTGA
74518 AACATAAATTACATAACTTTCAAAAAAGTATA
195 AACATAAATTACATAACTTT-AAAAAAGTATA
*
74550 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTA-TA-TTTGGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTACTTTAGT
*
74613 TAATATTGTTAAATTTAAATTCTAAATAATATTTTAT-AAATATCAAAACAATCAAATAAAATTT
65 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
*
74677 TGTGTAAATTAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAATAAATTG
130 TGTGT-AATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAATAAATTG
74742 AAACATAAATTACATAACTTTAAAA
194 AAACATAAATTACATAACTTTAAAA
74767 GCAGTTTTAA
Statistics
Matches: 205, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
223 30 0.15
224 95 0.46
225 27 0.13
226 37 0.18
227 16 0.08
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (225 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTACTTTAGTT
AATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTT
GTGTAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAATAAATTGAA
ACATAAATTACATAACTTTAAAAAAGTATA
Found at i:74855 original size:20 final size:19
Alignment explanation
Indices: 74832--74877 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
74822 CGATATACCA
74832 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
74852 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
74872 GGTAAA
1 GGTAAA
74878 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:75021 original size:20 final size:19
Alignment explanation
Indices: 74998--75044 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
74988 CGATATAACA
*
74998 GGTAAAAATATGATAAAACT
1 GGTAAAAA-ATGATAAAACC
*
75018 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
75038 GGTAAAA
1 GGTAAAA
75045 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:77398 original size:32 final size:32
Alignment explanation
Indices: 77344--77404 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
77334 AAATAGATGG
*
77344 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
***
77376 AGTGGTGAAAGAAGTTTCGGTGTTAAGGG
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGG
77405 GTGATATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.44, T:0.25
Consensus pattern (32 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
Found at i:79218 original size:19 final size:19
Alignment explanation
Indices: 79194--79242 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
79184 AATGTCGAGT
79194 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
79213 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
79232 TATTTTTGTAT
1 TAATTTTGTAT
79243 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:79742 original size:199 final size:198
Alignment explanation
Indices: 79360--81311 Score: 3523
Period size: 198 Copynumber: 9.9 Consensus size: 198
79350 CAATATGGCC
* * * *
79360 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
79425 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
79490 GGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
79555 GGAA
195 GGAA
*
79559 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
79624 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
79689 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATGTTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAT-ATTTTTTTCCAGAATGAAT
**
79754 TAAA
195 GGAA
79758 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
79823 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
79888 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
*
79953 AAA
196 GAA
* *
79956 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCACAAAATCATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
80021 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
80086 GGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
80151 GGAA
195 GGAA
*
80155 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
80220 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
80285 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
**
80350 TAAA
195 GGAA
80354 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
80418 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* *
80483 AATATGTCTAATTAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
*
80548 AAA
196 GAA
*
80551 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
80615 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
80679 GGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
80744 GGAA
195 GGAA
*
80748 AACAGGGTGCACCCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCCC-AAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
80810 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACTGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
80875 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAAT
80940 GGAA
195 GGAA
80944 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
81009 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
81073 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
81138 GAA
196 GAA
81141 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
81205 C-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT--GAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
81267 AATA-GTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
81312 CTAATTTAAA
Statistics
Matches: 1705, Mismatches: 38, Indels: 26
0.96 0.02 0.01
Matches are distributed among these distances:
193 41 0.02
194 63 0.04
195 123 0.07
196 98 0.06
197 239 0.14
198 577 0.34
199 564 0.33
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (198 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAA
Found at i:80139 original size:397 final size:395
Alignment explanation
Indices: 79360--81311 Score: 3526
Period size: 397 Copynumber: 4.9 Consensus size: 395
79350 CAATATGGCC
* * * *
79360 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
79425 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
79490 GGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
*
79555 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
195 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCG
*
79620 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATG
259 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
79685 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATGTTTTTTTTCCAGAAT
324 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAT-ATTTTTTTCCAGAAT
*
79750 GAATTAAA
388 GAATGAAA
79758 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
79823 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
79888 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
* *
79953 AAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCACAAAATCATCGA
196 GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCG-
*
80018 AAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
259 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
80083 AGAGGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATG
324 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATG
*
80148 AATGGAA
389 AATGAAA
*
80155 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
80220 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
80285 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
**
80350 TAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
195 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
80415 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
*
80480 GAGAATATGTCTAATTAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
*
80545 ATTAAA
390 ATGAAA
*
80551 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
80615 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
80679 GGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
*
80744 GGAAAACAGGGTGCACCCAT-AAGTGTCGATCCATATATAAAAGTGTCGATCCC-AAATCATCGA
195 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
*
80807 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACTGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
80872 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATG
*
80937 AATGGAA
389 AATGAAA
80944 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
81009 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
81073 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
81138 GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
196 GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
81203 CCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT--G
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
81265 AGAATA-GTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
326 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
81312 CTAATTTAAA
Statistics
Matches: 1508, Mismatches: 39, Indels: 21
0.96 0.02 0.01
Matches are distributed among these distances:
391 41 0.03
392 136 0.09
393 229 0.15
394 150 0.10
395 94 0.06
396 222 0.15
397 410 0.27
398 226 0.15
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (395 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAA
TGAAA
Found at i:82779 original size:23 final size:23
Alignment explanation
Indices: 82691--82770 Score: 124
Period size: 23 Copynumber: 3.5 Consensus size: 23
82681 ACATTTACAC
82691 GTAATAGGTAGCCCTTATATAAT
1 GTAATAGGTAGCCCTTATATAAT
*
82714 TTAATAGGTAGCCCTTATATAAT
1 GTAATAGGTAGCCCTTATATAAT
* **
82737 GTAATAGGTATCGTTTATATAAT
1 GTAATAGGTAGCCCTTATATAAT
82760 GTAATAGGTAG
1 GTAATAGGTAG
82771 TGGTTATATT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (23 bp):
GTAATAGGTAGCCCTTATATAAT
Found at i:82783 original size:21 final size:21
Alignment explanation
Indices: 82731--82784 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
82721 GTAGCCCTTA
* *
82731 TATAATGTAATAGGTATCGTT
1 TATATTGTAATAGGTATCGGT
82752 TATATAATGTAATAGGTAGT-GGT
1 TATAT--TGTAATAGGTA-TCGGT
82775 TATATTGTAA
1 TATATTGTAA
82785 AGTGTCTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 9 0.32
23 18 0.64
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (21 bp):
TATATTGTAATAGGTATCGGT
Found at i:84019 original size:20 final size:20
Alignment explanation
Indices: 83994--84062 Score: 129
Period size: 20 Copynumber: 3.5 Consensus size: 20
83984 CCTAATTCGT
83994 AATGCGAATACGTAAATCGC
1 AATGCGAATACGTAAATCGC
84014 AATGCGAATACGTAAATCGC
1 AATGCGAATACGTAAATCGC
84034 AATGCGAATACGTAAATCGC
1 AATGCGAATACGTAAATCGC
*
84054 AACGCGAAT
1 AATGCGAAT
84063 CTGACTATCG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (20 bp):
AATGCGAATACGTAAATCGC
Found at i:84706 original size:20 final size:20
Alignment explanation
Indices: 84627--84718 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 20
84617 GCGATTCTGT
*
84627 CGTTGTGATTTTCA-TTTCG
1 CGTTGCGATTTTCATTTTCG
** **
84646 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTTTCATTTTCG
**
84666 CGTTGCGATAGTCATTTTTCG
1 CGTTGCGATTTTCA-TTTTCG
*
84687 TGTTGCGATTTTCATTTTCG
1 CGTTGCGATTTTCATTTTCG
*
84707 TGTTGCGATTTT
1 CGTTGCGATTTT
84719 AAGTTTCAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.18
20 36 0.58
21 15 0.24
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.47
Consensus pattern (20 bp):
CGTTGCGATTTTCATTTTCG
Found at i:84725 original size:20 final size:20
Alignment explanation
Indices: 84682--84725 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
84672 GATAGTCATT
* *
84682 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
84702 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
84722 TTTC
1 TTTC
84726 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:86453 original size:34 final size:34
Alignment explanation
Indices: 86410--86560 Score: 144
Period size: 34 Copynumber: 4.3 Consensus size: 34
86400 TTTACTATCA
* *
86410 CAATGCGAAAATGACTATCGCAATGAGAGAATCG
1 CAATGCGAAAATGACTATCGCAACGAAAGAATCG
** *
86444 CAATGCG-AAATGAAAATCGCAAC-AACAAAATCG
1 CAATGCGAAAATGACTATCGCAACGAA-AGAATCG
*
86477 CAACGCGAAAATGACTATCGCAATGCGAAAATGACTATCG
1 CAATGCGAAAATGACTATCGCAA--CG-AAA-GA--ATCG
** *
86517 CAATGCGAATTTGACTATCGAAACGAAAGAATCG
1 CAATGCGAAAATGACTATCGCAACGAAAGAATCG
86551 CAATGCGAAA
1 CAATGCGAAA
86561 TGAAAACCGC
Statistics
Matches: 94, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
32 1 0.01
33 25 0.27
34 33 0.35
36 3 0.03
37 4 0.04
38 5 0.05
40 23 0.24
ACGTcount: A:0.44, C:0.20, G:0.20, T:0.17
Consensus pattern (34 bp):
CAATGCGAAAATGACTATCGCAACGAAAGAATCG
Found at i:86498 original size:20 final size:20
Alignment explanation
Indices: 86473--86541 Score: 93
Period size: 20 Copynumber: 3.5 Consensus size: 20
86463 CAACAACAAA
86473 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
86493 ATCGCAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
86513 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
86533 ATCGAAACG
1 ATCGCAACG
86542 AAAGAATCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:86692 original size:20 final size:20
Alignment explanation
Indices: 86586--86683 Score: 160
Period size: 20 Copynumber: 4.9 Consensus size: 20
86576 GATTCTCTCG
**
86586 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
86606 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
86626 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
* *
86646 TTGCGATAGTCATTTTCTCG
1 TTGCGATAGTCATTTTCGCA
86666 TTGCGATAGTCATTTTCG
1 TTGCGATAGTCATTTTCG
86684 TGTTGCGATT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:90210 original size:36 final size:36
Alignment explanation
Indices: 90163--90265 Score: 197
Period size: 36 Copynumber: 2.9 Consensus size: 36
90153 AGTTGAGTAT
90163 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
*
90199 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCC
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
90235 TATCAGCTTTGGTACATTCGTGTATCAATGT
1 TATCAGCTTTGGTACATTCGTGTATCAATGT
90266 CCAGCACCGT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
Found at i:98254 original size:36 final size:36
Alignment explanation
Indices: 98195--98296 Score: 168
Period size: 36 Copynumber: 2.8 Consensus size: 36
98185 AGTTGAGTAT
* * *
98195 TATCAGCTTTGATATATTTGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
*
98231 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCC
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
98267 TATCAGCTTTGGTACATTCGTGTATCAATG
1 TATCAGCTTTGGTACATTCGTGTATCAATG
98297 CCCAGCACCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.43
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
Found at i:99924 original size:19 final size:18
Alignment explanation
Indices: 99888--99960 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
99878 TTTATTGAAA
* *
99888 AACCGATAAACTGAACCG
1 AACCGAAAAACCGAACCG
99906 AACCGAAAAACCCGAACCG
1 AACCGAAAAA-CCGAACCG
*
99925 TTAA---AAAAACCGAACTG
1 --AACCGAAAAACCGAACCG
99942 AACCGAAAAAACCGAACCG
1 AACCG-AAAAACCGAACCG
99961 GTTTTTTCGG
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
15 2 0.05
17 7 0.16
18 14 0.32
19 19 0.43
21 2 0.05
ACGTcount: A:0.49, C:0.29, G:0.15, T:0.07
Consensus pattern (18 bp):
AACCGAAAAACCGAACCG
Found at i:100326 original size:14 final size:14
Alignment explanation
Indices: 100307--100342 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
100297 ATTATTTAAT
100307 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
100321 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
100335 TGATTTGT
1 TGATTTGT
100343 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:100503 original size:19 final size:19
Alignment explanation
Indices: 100479--100538 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
100469 TCGCTTCACG
100479 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTTATTTCGCA
* *
100498 TTGCGA---TTCTCTCG--
1 TTGCGATTTTTATTTCGCA
*
100512 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTTATTTCGCA
100531 TTGCGATT
1 TTGCGATT
100539 CTCTCGTTGC
Statistics
Matches: 31, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
14 6 0.19
16 6 0.19
17 5 0.16
19 14 0.45
ACGTcount: A:0.13, C:0.20, G:0.18, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTTATTTCGCA
Found at i:100517 original size:14 final size:14
Alignment explanation
Indices: 100498--100551 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
100488 TTATTTCGCA
100498 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
100512 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
100529 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
100545 TTGCGAT
1 TTGCGAT
100552 AATCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:100519 original size:33 final size:33
Alignment explanation
Indices: 100477--100560 Score: 141
Period size: 33 Copynumber: 2.5 Consensus size: 33
100467 TATCGCTTCA
*
100477 CGTTGCGATTTTTATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
100510 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
**
100543 CGTTGCGATAATCATTTC
1 CGTTGCGATTTTCATTTC
100561 CGCGTTGTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:100572 original size:20 final size:20
Alignment explanation
Indices: 100543--100637 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
100533 GCGATTCTCT
*
100543 CGTTGCGATAATCATTTCCG
1 CGTTGCGATAATCAATTCCG
* *
100563 CGTTGTGATAGTCAATTCCG
1 CGTTGCGATAATCAATTCCG
* * *
100583 CGTAT-CGATAGTCATTTTCG
1 CGT-TGCGATAATCAATTCCG
* *
100603 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAATCA-ATTCCG
*
100623 CGTTGCGATAGTCAA
1 CGTTGCGATAATCAA
100638 ATGAATGTCT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
19 2 0.03
20 58 0.92
21 3 0.05
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAATCAATTCCG
Found at i:100613 original size:40 final size:40
Alignment explanation
Indices: 100543--100636 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
100533 GCGATTCTCT
* *
100543 CGTTGCGATAATCATTTCCGCGTTGTGATAGTCA-ATTCCG
1 CGTTGCGATAGTCATTTCCGCGTTGCGATAGTCATATT-CG
* *
100583 CGTAT-CGATAGTCATTTTCGTGTTGCGATAGTCATATTCG
1 CGT-TGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCG
100623 CGTTGCGATAGTCA
1 CGTTGCGATAGTCA
100637 AATGAATGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
39 1 0.02
40 42 0.89
41 4 0.09
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.36
Consensus pattern (40 bp):
CGTTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCG
Found at i:103508 original size:20 final size:20
Alignment explanation
Indices: 103483--103529 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
103473 AAATTCAGTA
103483 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
*
103503 TTGCGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
103523 TTGCGAT
1 TTGCGAT
103530 TTACGTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:103539 original size:20 final size:20
Alignment explanation
Indices: 103516--103564 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
103506 CGATAGTCAG
*
103516 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
103536 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
103556 ATTCGCATT
1 ATTCGCATT
103565 ACGAATTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:104059 original size:21 final size:21
Alignment explanation
Indices: 104035--104085 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
104025 TTTATTGTTA
* *
104035 ATTTTTAATTTTTTTAACTTT
1 ATTTTTAATTATTTTAAATTT
*
104056 ATTTTTTATTATTTTAAATTT
1 ATTTTTAATTATTTTAAATTT
*
104077 ATTGTTAAT
1 ATTTTTAAT
104086 AAAAGTATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
ATTTTTAATTATTTTAAATTT
Found at i:106578 original size:17 final size:17
Alignment explanation
Indices: 106556--106588 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
106546 CCGGTTTCGG
106556 TTTTAAAAAACTGGTTT
1 TTTTAAAAAACTGGTTT
*
106573 TTTTAAAAAATTGGTT
1 TTTTAAAAAACTGGTT
106589 ATAAAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (17 bp):
TTTTAAAAAACTGGTTT
Found at i:107831 original size:21 final size:21
Alignment explanation
Indices: 107807--107848 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
107797 ACTTCAAGTT
107807 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
107828 CGATAATTGAAATAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
107849 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:109855 original size:19 final size:20
Alignment explanation
Indices: 109817--109855 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
109807 GTTAAAATAA
**
109817 CCGGTTTAAAAAAATTCGAT
1 CCGGTTTAAAAAAAACCGAT
109837 CCGG-TTAAAAAAAACCGAT
1 CCGGTTTAAAAAAAACCGAT
109856 TTTTCCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (20 bp):
CCGGTTTAAAAAAAACCGAT
Found at i:109892 original size:27 final size:28
Alignment explanation
Indices: 109855--109912 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
109845 AAAAAACCGA
*
109855 TTTTTCCC-AAATCTGAT-TTCGGATATT
1 TTTTTCCCAAAATCAGATATTCGGAT-TT
*
109882 TTTTTCGCAAAATCAGATATTCGGATTT
1 TTTTTCCCAAAATCAGATATTCGGATTT
109910 TTT
1 TTT
109913 GTGCACCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 7 0.26
28 13 0.48
29 7 0.26
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (28 bp):
TTTTTCCCAAAATCAGATATTCGGATTT
Found at i:113436 original size:22 final size:23
Alignment explanation
Indices: 113410--113459 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
113400 ATGTTATCTA
113410 CCTTTGTGACAC-TTTTTCTCTG
1 CCTTTGTGACACGTTTTTCTCTG
113432 CCTTTGTGACACGTTTTTCTCTG
1 CCTTTGTGACACGTTTTTCTCTG
113455 CCTTT
1 CCTTT
113460 TGGTAGCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.08, C:0.28, G:0.14, T:0.50
Consensus pattern (23 bp):
CCTTTGTGACACGTTTTTCTCTG
Found at i:115972 original size:11 final size:11
Alignment explanation
Indices: 115956--115981 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
115946 AGATTAGAAT
115956 AAATCAGTTGA
1 AAATCAGTTGA
115967 AAATCAGTTGA
1 AAATCAGTTGA
115978 AAAT
1 AAAT
115982 AAACGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (11 bp):
AAATCAGTTGA
Found at i:131314 original size:2 final size:2
Alignment explanation
Indices: 131307--131331 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
131297 GTTACATGAG
131307 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
131332 ACATGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.