genome.fa.s2151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002151.1 Hibiscus syriacus cultivar Beakdansim tig00004392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78788

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420--469	8	6.0	8	88	6	73	40	0	0	60	0.97
425--483	19	3.4	17	76	19	68	42	0	0	57	0.98
420--471	3	18.3	3	84	11	65	40	0	0	59	0.97
2564--2596	15	2.3	15	89	5	50	42	3	3	51	1.32
10161--10216	28	2.0	28	100	0	112	21	17	28	32	1.96
10753--10804	14	3.8	13	80	10	50	42	30	3	23	1.72
13614--13677	17	3.8	17	91	0	110	21	17	28	32	1.96
13724--14081	176	2.0	177	91	2	583	21	18	22	37	1.94
14427--14460	12	2.8	12	86	0	50	76	0	0	23	0.79
15080--15123	20	2.2	20	83	0	52	25	25	13	36	1.92
15087--15125	20	2.0	20	94	0	69	20	25	17	35	1.95
15335--15402	20	3.4	20	91	0	100	36	19	16	27	1.93
15335--15422	20	4.3	20	86	1	95	35	18	18	28	1.94
19015--19057	21	2.0	21	86	8	61	39	0	2	58	1.11
20377--20422	22	2.1	22	100	0	92	30	21	30	17	1.96
20898--20944	24	1.9	25	82	4	60	29	19	10	40	1.85
24276--24311	2	18.0	2	94	0	63	47	0	0	52	1.00
28922--28973	14	3.7	14	80	10	70	9	7	23	59	1.54
29719--30167	229	2.0	226	94	2	783	45	8	7	39	1.61
30233--30278	20	2.3	19	89	10	74	54	10	17	17	1.70
30400--30446	20	2.4	19	89	10	76	55	10	17	17	1.69
30404--30451	20	2.6	18	84	15	62	56	10	14	18	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32681--32745	21	3.1	21	80	6	69	40	15	29	15	1.88
32779--32844	33	2.0	33	90	0	105	28	0	48	22	1.51
34637--34685	19	2.6	19	93	0	80	30	2	10	57	1.43
34804--35976	199	5.9	199	96	0	2152	38	15	15	31	1.88
34875--35976	598	1.9	593	97	0	1821	37	14	15	32	1.88
37427--37511	21	4.6	18	68	22	59	36	8	35	20	1.82
37427--37515	6	14.3	6	74	6	61	37	7	34	20	1.82
37442--37519	3	26.0	3	74	0	66	35	6	34	23	1.80
37430--37518	42	2.1	42	89	0	133	35	7	34	21	1.82
37427--37519	18	5.0	18	75	7	69	36	7	34	21	1.82
38985--39328	184	1.9	184	93	0	589	35	14	16	33	1.89
41793--41857	25	2.6	25	80	0	85	35	9	13	41	1.77
42144--42207	23	2.8	23	87	0	92	35	6	20	37	1.78
42144--42216	23	3.2	23	82	7	85	34	5	20	39	1.76
42483--42533	25	2.0	25	92	0	84	33	7	19	39	1.81
42828--42864	18	2.1	18	89	0	56	32	5	10	51	1.60
42820--42866	24	2.0	24	86	0	67	34	4	14	46	1.64
43121--43207	39	2.2	39	95	0	156	48	20	13	17	1.81
43537--43599	23	2.7	23	90	0	90	36	6	19	38	1.77
43537--43609	23	3.2	23	86	3	85	35	5	19	39	1.75
45045--45097	27	2.0	27	81	7	63	37	24	13	24	1.91
45254--45384	60	2.2	60	82	10	153	32	14	14	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48277--48302	2	13.0	2	100	0	52	50	0	0	50	1.00
48997--49092	50	1.9	50	97	0	183	23	21	29	25	1.99
58211--58260	2	25.0	2	100	0	100	50	0	0	50	1.00
58262--58300	20	2.0	19	90	5	60	56	10	7	25	1.59
58760--58793	16	2.0	18	88	11	54	26	2	5	64	1.30
59261--59518	128	2.0	126	90	1	399	36	12	14	36	1.83
61426--61465	16	2.4	17	83	4	55	22	5	25	47	1.71
62031--62117	23	3.7	23	74	17	88	20	26	26	26	1.99
63523--63638	29	4.0	29	85	2	151	28	2	16	52	1.57
63523--63639	59	2.0	59	86	3	164	29	2	16	52	1.57
63528--63659	59	2.2	59	82	4	149	30	3	15	51	1.58
63606--63669	31	2.1	31	85	5	87	39	4	17	39	1.70
70290--70374	21	4.2	20	86	5	109	57	9	7	25	1.55
70290--70374	41	2.1	41	84	8	111	57	9	7	25	1.55
70886--71019	29	4.6	29	79	8	137	29	2	14	52	1.56
70885--71019	58	2.3	59	83	5	166	28	2	15	52	1.57
70977--71039	30	2.2	28	83	11	74	38	0	14	47	1.44
70977--71039	28	2.2	30	85	5	85	38	0	14	47	1.44
70990--71047	28	2.1	27	81	9	64	41	1	12	44	1.51
72898--72938	2	20.5	2	100	0	82	48	0	0	51	1.00
77836--77890	21	2.7	20	75	10	58	18	3	0	78	0.90
77838--77890	8	6.0	8	77	18	52	16	3	0	79	0.88

Tables:   1

The End!