genome.fa.s2152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002152.1 Hibiscus syriacus cultivar Beakdansim tig00004394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118575

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4160--4186	2	13.5	2	100	0	54	48	0	51	0	1.00
10271--10316	18	2.6	18	100	0	92	4	21	43	30	1.72
14321--14351	8	3.8	8	95	4	53	25	29	25	19	1.99
15391--15451	32	1.9	32	86	0	86	24	44	1	29	1.63
17758--17804	20	2.4	19	79	10	58	19	17	8	55	1.67
17925--17970	20	2.3	20	89	10	76	17	17	10	54	1.70
18035--18481	228	2.0	226	93	3	765	39	7	7	45	1.61
18907--18960	20	2.7	21	86	8	69	51	3	12	31	1.57
19098--19179	37	2.4	31	75	21	83	48	2	0	48	1.14
24028--24103	35	2.1	37	85	7	102	48	1	3	46	1.29
24247--24286	20	2.0	20	90	0	62	22	27	10	40	1.86
27599--27736	68	2.0	68	94	0	240	40	18	9	31	1.83
28670--28738	25	2.7	26	82	17	90	66	7	0	26	1.17
28915--28949	9	4.0	9	92	3	54	22	0	5	71	1.07
29235--29290	29	1.9	29	89	7	87	37	8	21	32	1.84
31155--31181	14	1.9	14	100	0	54	44	7	3	44	1.49
50965--51204	117	2.1	117	95	0	426	34	24	15	26	1.94
54198--54270	35	2.1	35	84	0	92	35	24	28	10	1.90
54246--54281	16	2.2	16	90	0	54	33	25	27	13	1.94
54256--54299	16	2.6	17	89	3	63	38	20	20	20	1.94
60962--61000	2	19.5	2	100	0	78	48	0	0	51	1.00
62584--62618	9	3.9	9	84	0	52	0	60	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63608--63641	2	16.5	2	93	6	59	50	2	0	47	1.16
63891--63930	14	2.9	14	85	3	55	57	27	12	2	1.48
64183--64228	14	3.1	14	87	6	65	54	17	13	15	1.71
64439--64493	26	2.1	26	100	0	110	32	18	10	38	1.85
69447--69503	15	3.7	15	81	9	78	21	35	28	15	1.94
69447--69515	15	4.3	16	78	10	61	21	33	27	17	1.96
69447--69515	32	2.2	32	94	0	120	21	33	27	17	1.96
77495--77546	21	2.5	21	81	3	61	38	19	25	17	1.93
77535--77709	20	8.6	20	83	5	165	31	25	18	24	1.98
77545--77709	61	2.7	61	83	5	174	31	24	18	24	1.98
77877--77920	22	2.0	22	86	8	63	25	40	15	18	1.90
78183--78241	20	3.0	20	87	0	73	16	18	22	42	1.89
79562--79606	18	2.5	18	85	0	63	28	42	15	13	1.85
80088--80154	20	3.4	20	81	2	73	38	23	22	14	1.92
80143--80201	14	3.9	14	74	20	55	49	22	16	11	1.78
80127--80218	33	2.8	33	96	0	166	47	20	18	13	1.81
80127--80223	19	5.6	19	69	22	88	46	20	19	13	1.83
80249--80316	20	3.5	20	85	2	93	14	22	23	39	1.91
80263--80341	20	4.0	20	83	0	68	18	17	24	39	1.92
80347--80415	25	2.6	28	73	19	76	21	10	15	52	1.73
82187--82222	14	2.6	14	90	0	54	30	0	22	47	1.52
82362--82426	19	3.7	19	82	17	95	47	18	20	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82445--82502	20	2.9	20	97	0	107	15	22	24	37	1.93
82806--82943	41	3.4	41	83	6	172	21	18	25	34	1.96
82826--82939	20	5.7	20	84	6	140	22	19	27	30	1.98
82806--82961	41	3.8	41	81	3	136	21	19	25	33	1.97
82929--82977	20	2.4	21	82	3	64	18	22	18	40	1.91
83011--83051	21	2.0	21	85	0	55	34	31	17	17	1.93
84622--84714	21	4.5	21	68	6	73	48	2	4	45	1.34
88820--88873	28	1.9	28	96	0	99	42	14	16	25	1.87
88956--88989	17	2.0	17	94	0	59	55	5	11	26	1.58
93472--93721	127	2.0	128	84	2	333	43	12	11	33	1.77
93712--93752	21	2.0	20	85	4	55	26	12	12	48	1.75
93595--94916	200	6.8	200	86	4	1696	39	13	14	33	1.85
93595--94739	389	2.9	390	86	3	1605	38	13	14	33	1.85
94301--94341	21	2.0	20	85	4	55	26	12	12	48	1.75
94556--94915	176	2.0	176	85	4	477	40	13	14	32	1.84
96501--96534	17	2.0	17	88	0	50	29	0	23	47	1.52
99157--99678	198	2.6	199	83	6	642	40	14	14	30	1.86
99700--99862	87	1.9	87	92	2	274	33	15	11	40	1.82
110163--110664	38	13.8	36	80	14	243	44	3	7	44	1.49
110330--110617	68	4.1	69	87	7	372	46	4	5	43	1.47
110690--110740	3	17.0	3	84	8	68	27	0	3	68	1.07
110692--110762	18	4.1	17	77	17	67	25	1	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110690--110746	21	2.8	21	87	10	82	26	0	3	70	1.03
112050--112083	4	9.0	4	87	12	54	26	0	0	73	0.83
112428--112463	18	2.0	18	88	0	54	30	13	13	41	1.84

Tables:   1

The End!