Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002155.1 Hibiscus syriacus cultivar Beakdansim tig00004402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180033

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11805--11884
2
45.0
2
72
22
54
56
0
0
43
0.99
11808--11886
9
9.2
8
77
15
54
56
0
0
43
0.99
11796--11888
25
3.8
25
78
16
106
55
0
0
44
0.99
12576--12609
15
2.3
15
89
0
50
8
17
64
8
1.47
12596--12620
11
2.3
11
100
0
50
8
20
64
8
1.46
21361--21388
2
14.0
2
100
0
56
0
50
0
50
1.00
22749--22830
41
2.0
41
92
0
137
26
25
29
18
1.98
23980--24008
15
1.9
15
100
0
58
55
0
3
41
1.17
24582--24618
20
1.9
19
89
10
58
45
10
24
18
1.81
25074--25135
29
2.2
30
82
8
76
30
6
0
62
1.20
28016--28045
14
2.1
14
93
0
51
6
20
0
73
1.05
28572--28607
3
12.0
3
87
0
54
63
0
5
30
1.17
42693--42746
18
3.0
18
81
8
65
46
0
1
51
1.11
54404--54456
27
2.0
26
88
3
79
32
20
11
35
1.88
54509--54643
72
1.9
71
90
1
216
22
20
20
36
1.95
54508--54649
36
4.0
36
82
0
178
23
21
19
35
1.96
57541--57584
2
22.0
2
95
0
79
47
0
2
50
1.13
76245--76283
19
2.0
20
95
5
71
53
10
15
20
1.70
79627--79651
13
1.9
13
100
0
50
16
0
0
84
0.63
80396--80481
27
3.2
27
73
15
97
45
3
8
43
1.50
82984--83017
7
4.9
7
88
0
50
41
17
0
41
1.50
82980--83017
14
2.7
14
87
0
58
44
18
0
36
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83116--83259
56
2.6
56
82
2
191
26
18
15
39
1.90
83987--84018
2
16.0
2
100
0
64
50
0
0
50
1.00
95712--95742
16
1.9
16
93
0
53
29
0
6
64
1.18
96310--96349
2
20.0
2
100
0
80
50
0
0
50
1.00
115635--115723
3
30.0
3
97
2
171
33
0
0
66
0.92
118539--118658
63
1.9
63
91
0
195
50
22
5
21
1.70
118511--118636
28
4.2
29
68
18
80
47
26
7
19
1.74
118619--118707
31
2.8
31
74
5
88
47
23
6
22
1.75
123205--123243
19
2.1
19
95
0
69
38
15
15
30
1.88
127843--128111
37
7.4
37
76
11
157
46
2
5
44
1.43
127920--127978
2
29.5
2
100
0
118
49
0
0
50
1.00
127935--128012
25
3.1
25
85
9
88
50
2
3
43
1.34
128038--128062
11
2.3
11
100
0
50
40
8
8
44
1.63
127949--128111
38
4.4
38
75
11
149
46
2
6
44
1.41
128095--128130
2
19.0
2
88
11
58
47
0
0
52
1.00
128120--128190
3
23.3
3
78
13
74
30
1
1
66
1.09
128120--128197
13
6.1
13
82
7
97
29
2
1
66
1.13
128120--128197
37
2.1
37
88
4
113
29
2
1
66
1.13
132718--132777
22
2.8
20
78
11
66
41
0
1
56
1.09
133911--133952
21
2.0
21
81
9
50
61
4
4
28
1.36
139871--139924
26
2.1
25
83
10
65
22
18
7
51
1.70
146098--146141
17
2.5
17
85
3
52
75
0
0
25
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146098--146126
6
4.8
6
100
0
58
82
0
0
17
0.66
158340--158387
20
2.5
19
80
12
62
41
6
2
50
1.39
162754--162790
10
3.7
10
85
0
56
45
0
0
54
1.00
164125--164174
6
8.5
6
78
12
59
66
0
0
34
0.92
164126--164175
17
2.8
18
82
11
68
66
0
0
34
0.92
170098--170154
18
3.1
19
80
10
64
26
26
0
47
1.52
170242--170290
20
2.3
22
86
10
66
20
28
6
44
1.75
170242--170312
23
3.2
22
86
5
83
21
26
4
47
1.68
170927--170990
30
2.1
30
85
5
85
50
3
0
46
1.17

Tables:   1

The End!