Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002158.1 Hibiscus syriacus cultivar Beakdansim tig00004406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119257

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4849--4881
2
16.5
2
100
0
66
51
0
0
48
1.00
7453--7498
22
2.2
22
84
7
60
45
0
4
50
1.21
7462--7507
22
2.1
22
83
0
56
41
2
8
47
1.46
11871--11909
13
2.9
13
84
3
51
41
7
10
41
1.68
13088--13189
30
3.4
30
93
1
152
30
26
21
21
1.98
13091--13225
30
4.5
30
87
1
119
31
25
21
21
1.98
13091--13214
60
2.1
60
83
3
151
31
26
21
20
1.98
13175--13239
31
2.1
31
85
5
87
35
23
20
21
1.96
13716--13773
20
2.6
22
84
10
75
27
22
18
31
1.97
17192--17290
30
3.3
30
91
1
146
31
26
21
21
1.98
17192--17326
30
4.5
30
86
1
110
31
25
20
21
1.98
17276--17340
31
2.1
31
85
5
87
35
23
20
21
1.96
17926--17976
19
2.7
19
100
0
102
23
29
17
29
1.97
17863--18021
83
1.9
82
82
8
198
25
23
17
33
1.96
18789--18845
23
2.7
20
75
19
62
35
17
17
29
1.93
22734--22954
117
1.9
118
84
4
304
29
15
8
47
1.74
25385--25447
32
2.0
32
84
9
85
34
17
9
38
1.82
26091--26118
2
14.0
2
100
0
56
50
0
0
50
1.00
27499--27548
3
16.7
3
95
0
91
32
0
2
66
1.03
32997--33054
20
2.6
23
76
10
59
27
20
25
25
1.99
33840--33912
30
2.4
30
81
2
74
20
17
26
35
1.95
35091--35143
21
2.5
21
96
0
97
32
28
28
11
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36110--36165
21
2.7
21
94
0
94
33
19
21
25
1.97
36450--36520
31
2.2
32
92
7
126
26
28
0
45
1.54
50534--50629
31
3.1
31
90
0
147
52
10
8
29
1.65
63260--63320
30
2.1
29
87
9
88
52
1
1
44
1.20
64012--64041
11
2.8
11
95
5
53
53
0
0
46
1.00
65812--65879
31
2.2
30
79
7
75
70
1
5
22
1.17
66919--66949
14
2.2
14
94
0
53
80
0
3
16
0.83
69185--69213
3
9.7
3
100
0
58
31
0
0
68
0.89
71961--72257
41
7.2
41
81
3
326
26
19
18
35
1.95
71979--72220
125
1.9
125
89
3
371
26
19
18
34
1.95
75458--75699
43
5.6
43
90
0
358
26
21
19
31
1.97
75458--75699
86
2.8
86
92
0
403
26
21
19
31
1.97
75458--75742
86
3.3
86
87
4
389
27
22
19
30
1.98
75461--75742
129
2.2
129
84
3
372
28
22
18
30
1.97
78010--78051
21
2.0
21
85
4
57
42
7
11
38
1.69
80452--80489
15
2.5
15
95
0
67
18
0
52
28
1.45
82906--83431
138
3.8
139
80
7
488
30
20
22
26
1.98
82906--83431
70
7.6
70
77
5
378
30
20
22
26
1.98
83409--83533
63
2.0
63
98
0
241
32
19
21
26
1.97
93930--94009
23
4.1
20
68
20
60
68
8
0
22
1.16
94163--94192
3
10.0
3
100
0
60
33
33
0
33
1.58
101717--101743
14
1.9
14
100
0
54
33
29
14
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104548--104576
13
2.1
14
93
6
51
34
0
0
65
0.93
104863--104910
13
3.7
14
81
10
50
39
0
0
60
0.97
105025--105063
20
2.0
20
84
0
51
43
0
0
56
0.99
105049--105084
16
2.3
15
90
4
54
41
2
0
55
1.14
106612--106676
30
2.2
30
88
0
94
38
12
6
43
1.67
106621--106681
30
2.0
30
100
0
122
40
13
3
42
1.60
118121--118153
13
2.6
13
90
4
50
18
0
3
78
0.87

Tables:   1

The End!