Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002159.1 Hibiscus syriacus cultivar Beakdansim tig00004408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68981

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10175--10204
11
2.7
11
94
0
51
46
0
16
36
1.47
10228--10260
8
4.1
8
96
0
57
33
0
0
66
0.92
12307--12431
36
3.6
35
83
5
146
11
14
34
40
1.81
13558--13617
3
20.3
3
96
3
113
66
0
0
33
0.92
17159--17229
30
2.3
30
82
2
79
30
9
19
39
1.84
19239--19313
37
2.0
37
82
10
91
49
4
1
45
1.29
27944--28061
20
5.9
20
86
4
121
28
23
22
25
1.99
29692--29735
12
3.8
12
76
11
56
11
20
47
20
1.80
29689--29739
22
2.3
22
93
0
84
9
21
47
21
1.79
29680--29740
17
3.3
17
75
20
59
14
21
44
19
1.86
29738--29835
19
5.1
19
77
13
83
30
27
24
17
1.97
29742--29834
29
3.2
29
79
8
91
31
27
24
16
1.96
29742--29835
9
9.7
10
75
13
81
30
27
24
17
1.97
29797--29835
21
1.9
21
89
5
62
33
23
25
17
1.96
36997--37034
17
2.2
17
100
0
76
13
23
44
18
1.85
37032--37099
19
3.5
20
82
11
81
26
27
27
17
1.98
37030--37100
29
2.5
30
79
9
85
25
26
29
18
1.98
37926--37968
22
2.0
22
95
0
77
23
41
16
18
1.89
40288--40328
20
2.0
20
100
0
82
39
24
19
17
1.92
40350--40405
20
2.8
20
97
0
103
17
19
23
39
1.92
40906--41004
21
4.8
20
69
10
65
22
34
20
23
1.97
40902--41004
42
2.5
41
75
7
109
21
34
20
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42415--42476
14
4.3
14
73
6
52
38
1
14
45
1.55
42673--42955
20
14.8
20
79
10
205
26
17
20
34
1.95
42750--42887
34
3.9
34
77
12
125
23
16
23
36
1.94
42713--42927
74
2.9
74
87
0
304
24
17
22
35
1.95
43256--43290
18
1.9
18
94
0
61
17
2
25
54
1.57
46430--46499
20
3.5
20
82
5
79
25
20
22
31
1.98
47160--47191
2
16.0
2
100
0
64
0
50
0
50
1.00
52160--52252
45
2.1
45
100
0
186
39
19
25
15
1.90
52813--52876
27
2.4
27
89
0
92
39
17
15
28
1.90
54353--54428
31
2.5
31
82
0
98
55
6
6
31
1.51
58039--58162
60
2.1
60
93
3
214
37
17
20
24
1.94
68573--68597
2
12.5
2
100
0
50
0
48
0
52
1.00

Tables:   1

The End!