genome.fa.s2160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002160.1 Hibiscus syriacus cultivar Beakdansim tig00004412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89458

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3369--3494	68	1.9	67	93	1	216	29	13	23	34	1.93
26911--27004	20	4.7	20	91	0	161	28	29	5	36	1.79
39436--39461	12	2.2	12	100	0	52	30	7	0	61	1.24
44086--44148	30	2.1	30	100	0	126	26	12	25	34	1.92
49835--50281	227	2.0	227	93	1	772	45	8	7	39	1.61
50347--50396	20	2.5	20	81	12	75	52	10	16	22	1.73
52848--52913	33	2.0	33	87	0	96	28	1	45	24	1.62
54689--54747	19	3.2	19	95	2	102	30	3	10	55	1.49
54829--56229	394	3.6	395	94	5	2447	36	14	15	33	1.88
57691--57732	3	14.0	3	89	0	66	35	2	33	28	1.70
59059--59445	180	2.1	180	94	3	681	34	14	15	34	1.89
59342--59535	94	2.1	88	90	8	300	38	12	14	34	1.84
59164--59719	273	2.0	272	94	3	978	35	14	15	33	1.88
59435--59994	182	3.1	183	96	2	1026	35	14	15	34	1.88
62540--62602	23	2.7	23	90	0	90	36	6	19	38	1.77
62540--62612	23	3.2	23	86	3	85	35	5	19	39	1.75
62615--62653	20	2.0	20	89	0	60	25	15	10	48	1.76
62964--63026	23	2.7	23	90	0	90	36	6	19	38	1.77
62964--63036	23	3.2	23	86	3	85	35	5	19	39	1.75
63398--63448	23	2.2	23	89	0	75	35	7	19	37	1.81
63407--63458	23	2.3	23	90	6	79	36	1	17	44	1.60
63814--63874	21	2.7	23	82	7	72	36	6	19	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63836--63884	23	2.1	23	88	7	73	36	2	18	42	1.62
63820--63889	21	3.2	21	78	11	61	34	5	20	40	1.76
62442--64152	424	4.0	430	97	2	3250	39	8	12	38	1.74
64602--64662	32	1.9	32	83	6	79	42	1	11	44	1.50
65266--65385	58	2.1	59	82	4	145	34	11	14	40	1.82
68502--68539	19	2.0	20	85	15	53	68	2	5	23	1.23
73334--73451	60	2.0	60	88	3	175	47	19	11	21	1.81
75791--75826	18	2.1	18	89	5	56	47	0	5	47	1.25
77549--77600	2	26.0	2	100	0	104	50	0	0	50	1.00

Tables:   1

The End!