genome.fa.s2161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002161.1 Hibiscus syriacus cultivar Beakdansim tig00004413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164381

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1397--1438	21	2.0	20	86	4	57	54	0	0	45	0.99
24256--24688	227	1.9	218	91	5	697	45	7	7	38	1.62
24751--24796	20	2.3	19	89	10	74	54	10	17	17	1.70
27054--27106	12	4.4	12	92	0	70	35	5	33	24	1.79
27066--27119	3	18.0	3	84	0	72	37	3	33	25	1.74
27051--27119	18	4.0	18	79	11	72	37	4	33	24	1.75
27062--27119	12	4.8	12	93	0	80	36	5	32	25	1.78
28534--29233	181	3.9	182	94	2	1207	35	14	16	33	1.90
31650--31719	25	2.8	25	82	0	95	35	10	12	41	1.77
32001--32048	22	2.2	22	82	14	64	37	12	10	39	1.77
32066--32128	23	2.8	23	85	2	83	36	6	20	36	1.78
32087--32137	23	2.2	23	89	6	77	35	1	19	43	1.63
32403--32453	25	2.0	25	92	0	84	33	7	19	39	1.81
32839--32875	18	2.1	18	89	0	56	32	5	10	51	1.60
32831--32877	24	2.0	24	86	0	67	34	4	14	46	1.64
33135--33221	39	2.2	39	95	0	156	48	20	13	17	1.81
33620--33690	22	3.2	23	84	6	83	32	4	22	40	1.73
33733--34390	327	2.0	330	96	1	1216	41	7	11	38	1.70
34716--34795	42	2.0	38	85	9	106	50	2	3	43	1.33
35544--35610	26	2.6	26	92	0	107	49	14	8	26	1.73
38493--38588	21	4.6	21	89	0	129	32	27	18	21	1.97
41098--41442	173	2.0	171	89	1	528	46	10	12	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44162--44196	17	2.1	17	94	0	61	45	17	0	37	1.48
47199--47228	5	6.0	5	96	0	51	40	3	0	56	1.16
57218--57257	14	2.9	14	84	0	62	50	0	0	50	1.00
59352--59414	31	2.0	31	100	0	126	26	31	9	31	1.88
69839--70069	116	2.0	117	92	3	385	27	14	11	46	1.79
73132--73210	31	2.6	30	88	4	122	36	10	13	39	1.79
77777--77832	29	1.9	29	89	7	87	21	23	39	16	1.92
77971--78009	14	2.8	14	92	0	60	25	41	25	7	1.82
78023--78067	23	2.0	23	90	0	72	24	26	40	8	1.84
84608--84687	40	2.0	40	100	0	160	32	12	17	37	1.87
88345--88492	21	7.0	21	73	11	124	21	18	25	34	1.96
88321--88492	63	2.8	63	86	3	233	21	18	25	35	1.95
88423--88516	42	2.2	42	92	0	152	22	17	23	37	1.94
94532--94583	10	5.4	10	93	6	90	38	9	0	51	1.35
94532--94586	19	2.9	19	94	5	94	36	10	0	52	1.37
107379--107414	19	1.9	19	88	5	56	36	5	16	41	1.72
107749--108021	60	4.5	59	73	13	243	33	19	6	41	1.76
107754--108021	121	2.2	120	91	1	421	33	19	6	40	1.77
108556--108586	2	15.0	2	93	6	53	48	3	0	48	1.17
108640--108792	60	2.5	60	82	4	166	32	22	4	41	1.74
131924--131978	26	2.1	26	96	0	101	49	1	3	45	1.30
131929--131986	26	2.2	26	93	0	98	53	1	3	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132545--132621	31	2.5	31	78	2	82	27	29	27	15	1.96
138152--138205	21	2.6	21	78	0	63	27	20	20	31	1.97
138110--138258	82	1.8	81	81	5	185	30	23	18	28	1.97
138110--138307	81	2.4	81	77	8	179	31	24	18	26	1.97
138274--138363	21	4.3	21	80	8	112	40	24	14	21	1.90
138385--138425	21	2.0	21	86	9	59	24	19	21	34	1.97
145957--146018	30	2.0	30	84	3	79	29	30	24	16	1.96
153589--153646	29	2.0	29	89	0	89	13	36	27	22	1.92
153682--153732	23	2.2	23	82	6	59	23	23	41	11	1.87
153689--153741	23	2.3	24	77	9	65	26	20	39	13	1.89
153705--153774	33	2.1	33	91	0	113	22	22	44	10	1.83
153790--153845	29	1.9	29	96	0	103	19	30	37	12	1.89

Tables:   1

The End!