Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002163.1 Hibiscus syriacus cultivar Beakdansim tig00004416_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99243

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4895--4942
24
1.9
25
84
16
64
33
18
0
47
1.49
9211--9255
23
1.9
24
90
4
74
28
4
17
48
1.66
9565--9621
30
1.9
30
92
0
96
14
14
35
36
1.86
12113--12148
18
2.0
18
89
10
56
41
13
5
38
1.68
14722--14779
25
2.2
27
76
14
68
60
1
5
32
1.29
14978--15015
16
2.3
17
86
4
51
26
0
0
73
0.83
23544--23580
2
18.5
2
88
0
56
48
2
2
45
1.30
37532--37577
19
2.5
17
80
16
56
19
23
10
45
1.82
42681--42723
15
2.8
15
82
10
52
46
4
0
48
1.22
43591--43862
43
6.3
43
75
9
214
24
18
5
51
1.68
49924--49979
27
2.0
28
86
3
78
41
0
1
57
1.09
50012--50046
17
2.1
17
94
0
61
34
8
5
51
1.56
50650--50683
16
2.1
16
94
0
59
32
8
26
32
1.87
60476--60525
24
2.1
24
100
0
100
48
8
24
20
1.76
61158--61526
185
2.0
185
98
0
711
37
22
14
26
1.92
66539--66917
186
2.0
186
94
1
661
46
8
3
40
1.53
66884--66923
20
2.0
21
85
14
57
42
2
2
52
1.28
67451--67552
52
2.0
51
88
7
152
45
10
15
28
1.80
70944--71002
30
2.0
29
83
6
73
55
5
10
28
1.54
72091--72177
31
2.8
30
83
10
104
42
1
2
54
1.20
72115--72178
19
3.2
20
75
14
62
45
1
0
53
1.10
78384--78414
2
15.5
2
100
0
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82638--82696
22
2.7
22
91
0
91
22
27
13
37
1.91
82665--82783
46
2.6
44
79
10
123
29
29
10
31
1.90
82759--82813
25
2.2
25
81
12
69
32
18
7
41
1.78

Tables:   1

The End!