Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002164.1 Hibiscus syriacus cultivar Beakdansim tig00004417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72938

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5590--5647
20
2.9
20
82
14
75
46
5
18
29
1.71
5795--5869
37
2.0
37
82
10
91
46
6
1
45
1.37
14179--14203
13
1.9
13
100
0
50
8
8
28
56
1.57
21189--21258
33
2.1
33
91
0
113
40
21
10
28
1.85
21841--21886
21
2.1
21
88
4
65
21
17
17
43
1.88
22290--22320
16
1.9
16
100
0
62
61
6
6
25
1.45
22338--22396
31
1.9
31
92
0
100
40
6
10
42
1.65
22421--22463
22
2.0
22
100
0
86
51
13
0
34
1.42
22423--22471
22
2.2
22
88
3
71
55
14
0
30
1.40
22443--22962
32
18.4
32
71
24
372
53
12
0
33
1.39
22426--22709
80
3.5
80
93
3
453
53
14
0
32
1.41
22480--22552
22
3.3
22
66
19
53
54
16
0
28
1.42
22443--22908
112
4.2
111
84
9
481
53
13
0
33
1.41
22559--22632
22
3.2
22
70
16
60
55
17
0
27
1.42
22625--22678
14
3.6
14
72
18
54
57
5
0
37
1.22
22667--22731
22
3.0
22
95
0
121
50
12
0
36
1.40
22910--23074
15
10.5
15
77
14
163
51
3
0
44
1.23
23506--23548
16
2.7
16
92
0
68
62
6
6
23
1.45
23567--23625
31
1.9
31
92
0
100
40
6
10
42
1.65
23650--23692
22
2.0
22
100
0
86
51
13
0
34
1.42
23652--23700
22
2.2
22
88
3
71
55
14
0
30
1.40
23640--24466
54
15.4
54
70
16
544
52
12
0
34
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23672--24466
32
29.4
31
66
29
299
52
13
0
34
1.41
23706--23780
22
3.2
22
75
14
69
54
16
1
28
1.50
23863--24501
76
8.1
76
80
14
648
52
12
0
35
1.39
23895--23959
22
3.0
22
95
0
121
50
12
0
36
1.40
23971--24015
22
2.0
22
100
0
90
48
13
0
37
1.42
23969--24021
22
2.4
22
90
6
81
52
11
0
35
1.37
24077--24134
18
3.4
18
70
18
61
56
13
0
29
1.38
24139--24209
22
3.2
22
89
2
79
53
14
0
32
1.41
24213--24277
22
3.0
22
95
0
121
50
12
0
36
1.40
24137--24197
22
2.8
22
97
0
113
50
14
0
34
1.43
23640--24501
318
2.7
316
92
5
1417
52
12
0
34
1.41
24291--24339
22
2.2
22
85
3
62
55
12
0
32
1.37
24396--24452
18
3.4
18
68
22
52
56
10
0
33
1.34
24414--24548
15
8.5
15
71
17
103
51
4
0
43
1.27
24414--24533
52
2.4
49
85
8
147
50
5
0
43
1.29
26262--26312
14
3.8
13
73
21
52
33
3
0
62
1.13
26259--26322
26
2.5
26
80
14
78
34
3
0
62
1.11
39128--39168
21
2.0
20
85
4
55
31
4
2
60
1.30
40358--40400
21
2.0
21
81
0
50
30
30
25
13
1.94
40380--40531
68
2.2
68
89
5
229
28
27
26
16
1.97
40899--40957
30
2.0
30
93
0
100
38
3
23
33
1.72
41168--41235
22
3.1
22
100
0
136
19
27
26
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47274--47316
21
2.0
21
81
0
50
30
30
25
13
1.94
47272--47446
67
2.6
67
84
8
214
29
26
26
17
1.98
47816--47874
30
2.0
30
93
0
100
38
3
23
33
1.72
48086--48131
22
2.1
22
100
0
92
19
28
26
26
1.99
48086--48139
22
2.5
22
93
0
81
20
25
24
29
1.99
48755--48792
17
2.2
17
90
9
60
65
0
0
34
0.93
52393--52456
18
3.5
17
79
14
65
39
3
0
57
1.14
63776--63848
36
2.0
36
82
10
87
47
5
1
45
1.34
70860--70893
16
2.1
16
88
5
50
29
2
5
61
1.34

Tables:   1

The End!