Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002165.1 Hibiscus syriacus cultivar Beakdansim tig00004421_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44197
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:5253 original size:15 final size:15
Alignment explanation
Indices: 5228--5262 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
5218 CATTCTTAAA
*
5228 TTATT-AATATATTT
1 TTATTAAATATATAT
5242 TTATTAAATATATAT
1 TTATTAAATATATAT
5257 TTATTA
1 TTATTA
5263 CATTTTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTATTAAATATATAT
Found at i:7668 original size:22 final size:20
Alignment explanation
Indices: 7640--7687 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
7630 GTTATTATTT
7640 ATAATATATATGTGTATTAC
1 ATAATATATATGTGTATTAC
7660 ATAATATATATGTGTATTAC
1 ATAATATATATGTGTATTAC
7680 ATAATATA
1 ATAATATA
7688 CATATCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (20 bp):
ATAATATATATGTGTATTAC
Found at i:9097 original size:20 final size:19
Alignment explanation
Indices: 9053--9119 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
9043 ATTTGTATTA
*
9053 TTTATATCTTTTA-TTTTT
1 TTTATATATTTTACTTTTT
*
9071 TCCTTATATATTTTACTATTT
1 T--TTATATATTTTACTTTTT
*
9092 TTT-TATATTTTACTTTTA
1 TTTATATATTTTACTTTTT
*
9110 TTTATTTATT
1 TTTATATATT
9120 GTTTTATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 17 0.43
19 7 0.17
20 11 0.28
21 5 0.12
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATATATTTTACTTTTT
Found at i:9135 original size:27 final size:29
Alignment explanation
Indices: 9087--9143 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
9077 TATATTTTAC
*
9087 TATTTTTTTATATTTTACTTTTATTTATT
1 TATTGTTTTATATTTTACTTTTATTTATT
*
9116 TATTGTTTTAT-TTTT-CTTTTCTTTATT
1 TATTGTTTTATATTTTACTTTTATTTATT
9143 T
1 T
9144 TTATCCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 12 0.46
28 4 0.15
29 10 0.38
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (29 bp):
TATTGTTTTATATTTTACTTTTATTTATT
Found at i:9203 original size:23 final size:22
Alignment explanation
Indices: 9167--9209 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
9157 CTTTTACATA
*
9167 TATTTTATTACTTTATTTATTCT
1 TATTTTATCACTTT-TTTATTCT
*
9190 TATTTTATCCCTTTTTTATT
1 TATTTTATCACTTTTTTATT
9210 TACATTGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.70
Consensus pattern (22 bp):
TATTTTATCACTTTTTTATTCT
Found at i:9240 original size:19 final size:17
Alignment explanation
Indices: 9218--9266 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
9208 TTTACATTGC
9218 TATTTTTCTTTATATTGTT
1 TATTTTT-TTTATATT-TT
* *
9237 TATTTAATTTTGTATTTT
1 TATTT-TTTTTATATTTT
9255 TATTTTTTTTAT
1 TATTTTTTTTAT
9267 TACTTTTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 5 0.20
18 7 0.28
19 12 0.48
20 1 0.04
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (17 bp):
TATTTTTTTTATATTTT
Found at i:9349 original size:21 final size:21
Alignment explanation
Indices: 9300--9350 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
9290 GTTTCTGTGT
9300 TTTATTTATTTATTATCTTTAC
1 TTTATTT-TTTATTATCTTTAC
*
9322 TTCATTTTTTA-TATCCTTTTA-
1 TTTATTTTTTATTAT-C-TTTAC
9343 TTTATTTT
1 TTTATTTT
9351 ATTTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 3 0.12
21 12 0.48
22 10 0.40
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTATTTTTTATTATCTTTAC
Found at i:9352 original size:9 final size:9
Alignment explanation
Indices: 9338--9388 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
9328 TTTTATATCC
9338 TTTTATTTA
1 TTTTATTTA
9347 TTTTATTTA
1 TTTTATTTA
9356 -TTTA-TTA
1 TTTTATTTA
9363 TTTTATTT-
1 TTTTATTTA
*
9371 TCTTCATTTTA
1 T-TTTA-TTTA
9382 TTTTATT
1 TTTTATT
9389 ACTTTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
7 3 0.09
8 9 0.26
9 16 0.46
10 6 0.17
11 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:12385 original size:95 final size:94
Alignment explanation
Indices: 12272--12457 Score: 302
Period size: 95 Copynumber: 2.0 Consensus size: 94
12262 TATAATATTA
*
12272 TATATATACAATAAAGCTTGAGTTATCCCTCT-AGAGCAATTGGTTAAATGCCCCGGCTTTATGG
1 TATATATACAATAAAGCTTGAGTTATCCCTCTAAG-GCAATTGGTTAAACGCCCCGGCTTTATGG
* *
12336 ATAATATTCAGCTAGCCTGATAAAGGTAAT
65 ATAAGATTCAGCTAACCTGATAAAGGTAAT
* *
12366 TATACTATATAATAAAGCTTGAGTTGTCCCTCTAAGGCAATTGGTTAAACGCCCCGGCTTTATGG
1 TATA-TATACAATAAAGCTTGAGTTATCCCTCTAAGGCAATTGGTTAAACGCCCCGGCTTTATGG
12431 ATAAGATTCAGCTAACCTGATAAAGGT
65 ATAAGATTCAGCTAACCTGATAAAGGT
12458 GTTTATTTAT
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
94 4 0.05
95 79 0.93
96 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (94 bp):
TATATATACAATAAAGCTTGAGTTATCCCTCTAAGGCAATTGGTTAAACGCCCCGGCTTTATGGA
TAAGATTCAGCTAACCTGATAAAGGTAAT
Found at i:14381 original size:37 final size:37
Alignment explanation
Indices: 14331--14473 Score: 234
Period size: 37 Copynumber: 3.9 Consensus size: 37
14321 GTGCTCATCA
14331 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATC
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATC
*
14368 TTGTCTCTCTTGAGGCAGTTTCCCTTGAAACAAAATC
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATC
* *
14405 TTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATC
*
14442 TTGTCT-TCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCT-CTTGAGACAGTTTCCCTTGAAACA
14474 TAAACATTGA
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.36
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATC
Found at i:14527 original size:102 final size:102
Alignment explanation
Indices: 14386--14640 Score: 343
Period size: 102 Copynumber: 2.5 Consensus size: 102
14376 CTTGAGGCAG
** * * *
14386 TTTCCCTTGAAACAAAATCTTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTTCC
1 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
*
14451 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACC
65 TTGAGACAGTTTCTCTTCAAACATAAACATTGAAAACC
*
14489 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
** * **
14554 TGAGACAGTTTCTCTTCAAACATAAATTTTGAGAATG
66 TGAGACAGTTTCTCTTCAAACATAAACATTGAAAACC
* *
14591 TTTCCCTTGAAACATG--TTTTCTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTTCCCTTG-AA-ATGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
14641 CAAACCTTTG
Statistics
Matches: 135, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
102 118 0.87
103 14 0.10
104 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTCTCTTCAAACATAAACATTGAAAACC
Found at i:14556 original size:37 final size:37
Alignment explanation
Indices: 14489--14584 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
14479 ATTGAAAACC
** * *
14489 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
14525 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
* *
14562 TTTCTCTTCAAACATAAATTTTG
1 TTTCCCTTGAAACA-AAATTTTG
14585 AGAATGTTTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 12 0.23
37 32 0.62
38 8 0.15
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:14596 original size:66 final size:67
Alignment explanation
Indices: 14516--14670 Score: 192
Period size: 66 Copynumber: 2.3 Consensus size: 67
14506 TTTGTCTCTC
* *
14516 TTGAG-ATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTCAAACATAAA
1 TTGAGAAT-GTTTCCCTTGAAACAAAATTTTCTCTCCCTTGAGACAGTTTCTCTTCAAACACAAA
*
14580 -TT
65 CCT
** * *
14582 TTGAGAATGTTTCCCTTGAAAC-ATGTTTTCTCTCTCTTGAGACAGTTTCTCTTGAAACACAAAC
1 TTGAGAATGTTTCCCTTGAAACAAAATTTTCTCTCCCTTGAGACAGTTTCTCTTCAAACACAAAC
14646 CT
66 CT
*
14648 TTGA-AATTGTTTCTCTTGAAACA
1 TTGAGAA-TGTTTCCCTTGAAACA
14671 CAAAGACCTT
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
65 37 0.48
66 38 0.49
67 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (67 bp):
TTGAGAATGTTTCCCTTGAAACAAAATTTTCTCTCCCTTGAGACAGTTTCTCTTCAAACACAAAC
CT
Found at i:15769 original size:23 final size:23
Alignment explanation
Indices: 15726--15772 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15716 ACCTTTGTTA
*
15726 TTATATATATTATCTATTTATTT
1 TTATATATATTATATATTTATTT
*
15749 TTATATAT-TTGTATATATTATTT
1 TTATATATATTATATAT-TTATTT
15772 T
1 T
15773 CATTATTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
TTATATATATTATATATTTATTT
Found at i:15849 original size:20 final size:19
Alignment explanation
Indices: 15818--15868 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
15808 ACGTTATTTG
* *
15818 TATTATTTATATCTTTTAT
1 TATTTTTTATATATTTTAT
*
15837 TTTTTTCTTATATATTTTAT
1 TATTTT-TTATATATTTTAT
15857 TATTTTTTATAT
1 TATTTTTTATAT
15869 TTTACTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.73
Consensus pattern (19 bp):
TATTTTTTATATATTTTAT
Found at i:15982 original size:23 final size:22
Alignment explanation
Indices: 15945--15987 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
15935 CCTTTTACAT
*
15945 TTATTTTATTACTTTATTTATTC
1 TTATTTTATCACTTT-TTTATTC
*
15968 TTATTTTATCCCTTTTTTAT
1 TTATTTTATCACTTTTTTAT
15988 GTACATTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.70
Consensus pattern (22 bp):
TTATTTTATCACTTTTTTATTC
Found at i:16133 original size:14 final size:14
Alignment explanation
Indices: 16116--16150 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
16106 TTTTATATCC
*
16116 TTTTATTTATTTTA
1 TTTTATTCATTTTA
*
16130 TTTTCTTCATTTTA
1 TTTTATTCATTTTA
16144 TTTTATT
1 TTTTATT
16151 ACTTTTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTCATTTTA
Found at i:17239 original size:12 final size:12
Alignment explanation
Indices: 17222--17246 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17212 AGTCAACAGT
17222 AATCATAATGAA
1 AATCATAATGAA
17234 AATCATAATGAA
1 AATCATAATGAA
17246 A
1 A
17247 GTGAATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
AATCATAATGAA
Found at i:23057 original size:28 final size:28
Alignment explanation
Indices: 23017--23073 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
23007 AAGTTTTAAT
23017 CCCTTCCATGAAGGTTTATATACGAACC
1 CCCTTCCATGAAGGTTTATATACGAACC
23045 CCCTTCCATGAAGGTTTATATACGAACC
1 CCCTTCCATGAAGGTTTATATACGAACC
23073 C
1 C
23074 TTAGTGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (28 bp):
CCCTTCCATGAAGGTTTATATACGAACC
Found at i:28769 original size:24 final size:24
Alignment explanation
Indices: 28741--28818 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
28731 GAGTCTACTG
28741 GATTTAAATTCAAACTCGATTCGA
1 GATTTAAATTCAAACTCGATTCGA
* * *
28765 GATTT-GACTCAAA-TTGAATTTACTG-
1 GATTTAAATTCAAACTCG-A-TT-C-GA
*
28790 GATTTAAATTCAAACTCGATTGGA
1 GATTTAAATTCAAACTCGATTCGA
28814 GATTT
1 GATTT
28819 GACTCAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 2 0.05
23 8 0.20
24 12 0.30
25 8 0.20
26 8 0.20
27 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (24 bp):
GATTTAAATTCAAACTCGATTCGA
Found at i:28777 original size:23 final size:23
Alignment explanation
Indices: 28750--28826 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
28740 GGATTTAAAT
28750 TCAAACTCGATTCGAGATTTGAC
1 TCAAACTCGATTCGAGATTTGAC
* * *
28773 TCAAA-TTGAATTTACTG-GATTTAAAT
1 TCAAACTCG-A-TT-C-GAGATTT-GAC
*
28799 TCAAACTCGATTGGAGATTTGAC
1 TCAAACTCGATTCGAGATTTGAC
28822 TCAAA
1 TCAAA
28827 TTGAGTATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 2 0.05
23 13 0.32
24 7 0.17
25 8 0.20
26 8 0.20
27 2 0.05
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
TCAAACTCGATTCGAGATTTGAC
Found at i:28789 original size:49 final size:49
Alignment explanation
Indices: 28722--28830 Score: 191
Period size: 49 Copynumber: 2.2 Consensus size: 49
28712 TCCACTCAAC
*
28722 ACTCAAATTGAGTCTACTGGATTTAAATTCAAACTCGATTCGAGATTTG
1 ACTCAAATTGAATCTACTGGATTTAAATTCAAACTCGATTCGAGATTTG
* *
28771 ACTCAAATTGAATTTACTGGATTTAAATTCAAACTCGATTGGAGATTTG
1 ACTCAAATTGAATCTACTGGATTTAAATTCAAACTCGATTCGAGATTTG
28820 ACTCAAATTGA
1 ACTCAAATTGA
28831 GTATTATTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (49 bp):
ACTCAAATTGAATCTACTGGATTTAAATTCAAACTCGATTCGAGATTTG
Found at i:29094 original size:14 final size:14
Alignment explanation
Indices: 29064--29108 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
29054 TTATTTACCA
29064 AAATAAAAAATAA--
1 AAATAAAAAA-AATT
29077 AAATAAAAAAAATT
1 AAATAAAAAAAATT
*
29091 AAATAAGAAAAATT
1 AAATAAAAAAAATT
29105 AAAT
1 AAAT
29109 CCTACATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 2 0.07
13 10 0.34
14 17 0.59
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAAATT
Found at i:39088 original size:10 final size:10
Alignment explanation
Indices: 39073--39109 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
39063 TATTTTAAGC
39073 TTGTTTTTGT
1 TTGTTTTTGT
39083 TTGTTTTTGT
1 TTGTTTTTGT
*
39093 TTGGTTTGTGT
1 TT-GTTTTTGT
39104 TTGTTT
1 TTGTTT
39110 AAAATTTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (10 bp):
TTGTTTTTGT
Found at i:40834 original size:2 final size:2
Alignment explanation
Indices: 40827--40857 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
40817 TATTTAATGA
40827 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40858 TTTAACCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:42476 original size:2 final size:2
Alignment explanation
Indices: 42464--42494 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
42454 GAAGGTTAAA
42464 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42495 TCATTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.