Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002166.1 Hibiscus syriacus cultivar Beakdansim tig00004422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90190

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
677--716
21
1.9
21
84
0
53
65
10
12
12
1.49
4106--4149
23
1.9
23
90
0
70
43
4
11
40
1.61
4646--4705
23
2.6
23
97
0
111
18
23
48
10
1.78
4681--4745
33
2.0
33
93
0
112
21
26
41
10
1.86
4762--4817
29
1.9
29
96
0
103
21
30
35
12
1.90
5469--5507
20
2.0
20
89
0
60
51
0
2
46
1.14
13403--13476
29
2.5
31
80
4
89
44
6
17
31
1.75
25073--25104
14
2.3
14
94
0
55
62
12
9
15
1.54
27458--27484
2
13.5
2
100
0
54
51
0
0
48
1.00
27484--27511
2
14.0
2
100
0
56
50
0
50
0
1.00
27848--27872
12
2.1
12
100
0
50
92
0
8
0
0.40
38397--38430
16
2.1
16
89
10
52
2
20
17
58
1.51
48362--48404
22
2.0
23
86
9
63
69
4
0
25
1.07
48532--48589
30
2.0
30
82
3
73
43
3
3
50
1.36
58156--58190
16
2.2
16
89
0
52
51
5
2
40
1.40
58623--58679
29
2.0
29
83
10
73
42
0
3
54
1.17
62131--62224
21
4.4
21
80
1
89
31
14
14
38
1.87
65629--65712
15
5.7
15
75
8
55
41
17
7
33
1.77
67789--67821
7
4.7
7
100
0
66
30
42
15
12
1.83
69436--69478
18
2.4
18
88
0
68
16
13
48
20
1.80
72211--72252
14
3.0
14
85
0
57
11
4
16
66
1.40
72321--72363
17
2.5
17
80
20
54
41
20
2
34
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73551--73626
40
1.9
40
91
2
127
67
3
6
22
1.31
73696--75023
325
4.0
334
94
2
2254
43
8
5
42
1.57
73696--75023
658
2.0
664
93
2
2255
43
8
5
42
1.57
76577--76615
16
2.4
16
91
8
62
23
0
23
53
1.46
76797--76850
26
2.1
26
96
0
99
22
14
27
35
1.93
81880--81987
42
2.6
42
80
5
121
25
37
10
27
1.88
82813--82863
15
3.4
15
88
0
75
37
5
17
39
1.74
82824--82869
15
3.1
14
84
9
56
39
6
17
36
1.76
83259--83336
27
2.8
26
74
18
77
50
2
2
44
1.29
83244--83438
52
3.7
51
71
18
116
48
2
1
47
1.22
83351--83429
32
2.5
32
81
10
90
49
1
1
48
1.17
83384--83450
22
3.3
21
73
17
61
52
0
0
47
1.00
83382--83453
32
2.4
30
76
17
78
52
0
0
47
1.00
83662--83743
41
2.0
41
92
0
137
48
18
14
18
1.81

Tables:   1

The End!