Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002167.1 Hibiscus syriacus cultivar Beakdansim tig00004423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68064

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16--48
5
6.6
5
92
0
57
36
0
0
63
0.95
7--58
15
3.5
15
86
5
70
32
0
1
65
1.04
2764--2789
4
6.5
4
100
0
52
46
0
0
53
1.00
3526--3584
23
2.7
21
75
14
66
44
0
6
49
1.29
4431--4464
14
2.4
14
90
5
50
44
0
2
52
1.16
6145--6184
18
2.1
18
86
9
53
20
0
7
72
1.08
6579--6615
3
12.3
3
100
0
74
67
0
32
0
0.91
14026--14102
38
2.0
38
87
0
109
24
15
20
38
1.92
16519--16579
23
2.7
23
92
2
97
24
26
27
21
1.99
19872--19905
14
2.4
14
100
0
68
35
20
5
38
1.77
21479--21539
23
2.7
23
92
2
97
24
26
27
21
1.99
24826--24859
14
2.4
14
100
0
68
35
20
5
38
1.77
26187--26225
18
2.2
18
86
9
53
33
17
0
48
1.48
26423--26483
23
2.7
23
92
2
97
24
26
27
21
1.99
32487--32524
12
3.2
12
92
0
67
7
15
50
26
1.72
32490--32541
24
2.2
24
82
0
59
15
15
44
25
1.85
32539--32631
2
49.0
2
70
10
52
47
0
0
52
1.00
32539--32635
33
2.9
33
81
3
113
47
0
0
52
1.00
32648--32691
12
3.5
13
87
9
65
13
15
50
20
1.78
32648--32690
13
3.5
13
87
9
63
13
16
51
18
1.77
34826--34972
73
2.0
74
95
1
269
29
12
25
32
1.92
35344--35393
2
25.0
2
100
0
100
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37160--37200
16
2.6
16
100
0
82
58
21
12
7
1.58
38370--38420
14
3.9
14
73
19
56
56
19
11
11
1.65
38370--38431
24
2.6
24
89
0
88
56
20
11
11
1.65
39984--40074
39
2.3
39
92
0
155
40
15
16
27
1.88
53296--53335
2
20.0
2
100
0
80
50
0
0
50
1.00
54545--55159
261
2.4
254
86
8
851
27
13
18
40
1.88
58034--58079
6
7.7
6
100
0
92
32
0
17
50
1.47
58279--58304
7
3.7
7
100
0
52
42
0
30
26
1.56
59600--59684
32
2.7
31
84
12
102
41
0
7
51
1.29
59623--59685
32
2.0
32
93
0
108
39
0
7
52
1.31

Tables:   1

The End!