Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002168.1 Hibiscus syriacus cultivar Beakdansim tig00004424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56004

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1233--1345
33
3.5
32
95
2
199
43
22
24
9
1.83
1236--1350
14
6.9
18
72
23
101
41
22
25
10
1.85
1362--1418
14
3.7
14
75
20
60
8
24
22
43
1.81
1346--1426
33
2.5
33
93
0
135
8
22
23
45
1.79
1403--1479
21
3.7
21
82
6
102
11
24
19
44
1.84
1402--1480
42
1.9
41
92
2
131
12
25
18
43
1.86
1557--1626
32
2.2
33
86
2
97
48
17
22
11
1.79
1976--2057
40
2.1
40
81
6
96
23
15
23
37
1.93
2000--2167
20
8.6
19
82
6
160
19
19
26
34
1.96
2003--2148
39
3.8
39
82
7
174
21
19
25
33
1.97
2154--2251
21
4.8
20
76
15
92
21
20
19
38
1.93
2154--2252
42
2.4
43
78
11
109
21
20
20
38
1.94
2783--2901
51
2.4
51
82
1
132
18
31
27
21
1.97
4475--4514
20
2.0
20
95
0
71
27
30
17
25
1.97
4604--4655
19
2.7
19
90
0
68
38
11
11
38
1.78
4620--4666
19
2.5
19
89
0
67
42
12
6
38
1.69
4730--4789
29
2.0
31
90
6
97
41
16
6
35
1.75
7299--7631
111
3.0
111
95
0
585
45
11
7
35
1.68
7757--7797
10
4.1
10
84
12
57
39
0
29
31
1.57
12251--12292
21
2.0
21
86
9
59
33
0
2
64
1.07
12958--12986
2
14.5
2
100
0
58
48
0
0
51
1.00
19555--19639
30
2.8
28
75
12
80
50
2
14
32
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21173--21348
90
2.0
90
89
2
273
36
9
7
46
1.65
32557--32765
109
1.9
111
82
5
264
45
9
8
37
1.66
34297--34349
3
19.0
3
81
14
60
66
1
0
32
1.03
34297--34352
19
3.0
18
79
7
67
66
1
0
32
1.03
34297--34359
22
2.8
22
85
2
81
68
3
0
28
1.05
34701--35260
113
5.0
111
87
5
734
29
18
14
36
1.91
35647--35701
22
2.5
22
84
0
74
38
12
14
34
1.84
42439--42484
16
3.0
15
81
15
58
60
8
8
21
1.53
45716--45745
3
10.0
3
92
0
51
63
0
3
33
1.11

Tables:   1

The End!