Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002169.1 Hibiscus syriacus cultivar Beakdansim tig00004425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81575

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
930--967
20
1.9
20
88
0
58
42
0
2
55
1.14
7123--7157
18
2.0
18
88
5
54
60
5
5
28
1.43
22150--22179
15
2.0
15
93
0
51
63
6
3
26
1.35
22855--22939
16
5.4
16
88
2
120
58
17
10
12
1.62
24061--24122
24
2.6
24
87
5
90
53
17
14
14
1.74
25964--26001
20
1.9
20
84
10
51
55
2
5
36
1.37
27317--27361
23
2.0
23
82
8
56
42
2
6
48
1.41
32471--32519
8
6.0
8
79
13
55
67
0
0
32
0.91
33698--33796
48
2.1
48
96
0
180
46
8
27
18
1.77
33710--33812
48
2.1
48
92
3
172
48
9
28
13
1.74
37461--37497
19
1.9
19
94
0
65
32
29
16
21
1.95
37581--37677
41
2.4
41
84
3
124
41
20
18
19
1.91
37602--37678
21
3.7
21
76
10
86
40
23
18
18
1.91
37694--37764
19
3.7
19
75
3
79
25
19
21
33
1.97
37699--37776
39
2.0
40
92
2
131
23
19
21
35
1.96
38196--38237
19
2.2
19
91
0
66
30
23
4
40
1.75
39369--39403
2
17.5
2
100
0
70
48
0
0
51
1.00
44687--44715
14
2.1
14
100
0
58
55
0
6
37
1.27
46306--46444
42
3.3
42
86
5
192
27
3
16
52
1.60
50181--51554
462
3.0
462
97
0
2595
39
12
8
39
1.73
51612--51653
20
2.2
19
95
4
75
47
9
19
23
1.78
51680--51792
29
3.3
35
64
20
85
29
3
26
40
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51706--51809
29
3.3
29
67
21
82
36
2
23
37
1.70
51691--51824
67
2.0
67
98
0
259
34
2
24
38
1.71
56246--56318
37
2.0
37
86
10
105
54
1
6
36
1.36
56733--56791
31
2.0
27
81
18
66
27
3
6
62
1.36
57449--57645
6
33.0
6
85
1
225
0
42
0
57
0.98
57449--57645
15
13.6
15
80
9
194
0
42
0
57
0.98
59502--59570
30
2.3
30
80
11
79
56
2
0
40
1.14
62517--62572
20
2.8
20
83
0
67
44
7
19
28
1.77
62734--62798
33
1.9
34
84
9
89
49
4
1
44
1.32
64075--64176
18
5.8
18
77
11
77
0
40
6
52
1.28
64079--64192
36
3.3
35
84
10
128
0
37
7
54
1.30
64127--64192
18
3.7
18
89
4
98
0
33
9
57
1.30
65196--65228
15
2.1
16
88
11
50
36
0
12
51
1.39
67510--67596
31
2.8
30
81
10
104
54
4
0
41
1.21
67521--67563
19
2.1
21
87
8
63
53
2
0
44
1.13
68337--68415
2
39.5
2
97
0
149
49
1
0
49
1.09

Tables:   1

The End!