Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002170.1 Hibiscus syriacus cultivar Beakdansim tig00004426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194103

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17403--17473
36
2.0
36
97
0
133
40
11
25
22
1.87
30617--30682
22
3.0
23
93
4
102
25
27
27
19
1.99
32373--32417
21
2.1
21
87
0
63
15
24
28
31
1.96
35482--35548
22
3.0
22
95
2
116
25
28
26
19
1.99
37230--37274
21
2.1
21
87
0
63
15
24
28
31
1.96
39035--39059
12
2.1
12
100
0
50
40
8
8
44
1.63
39560--39720
81
2.0
81
97
2
306
41
11
7
39
1.69
45752--45827
28
2.7
29
71
17
70
40
3
9
46
1.54
45826--45883
24
2.5
24
83
8
75
67
1
0
31
1.01
46658--46697
21
1.9
21
84
0
53
50
10
2
37
1.50
46656--46703
21
2.3
20
79
10
51
52
8
2
37
1.44
51035--51155
64
1.9
63
84
1
161
26
17
20
35
1.95
63866--63934
27
2.4
27
81
11
77
49
1
1
47
1.19
63884--63934
25
1.9
27
84
11
70
47
1
0
50
1.12
64222--64270
21
2.3
22
79
13
57
38
8
0
53
1.31
65050--65094
23
1.9
24
81
4
56
51
2
6
40
1.41
70283--70410
60
2.1
60
78
2
132
41
17
11
29
1.85
70423--70455
14
2.3
15
84
10
50
42
9
6
42
1.61
75558--75617
2
30.0
2
100
0
120
50
0
0
50
1.00
89471--89529
31
1.9
31
92
0
100
18
11
10
59
1.60
91702--91746
18
2.5
18
92
0
72
6
31
46
15
1.72
96335--96411
30
2.3
35
82
14
92
59
5
2
32
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97508--97946
221
2.0
218
97
2
835
32
18
21
27
1.97
104663--105192
265
2.0
264
96
0
988
40
9
13
36
1.77
112366--112474
50
2.1
51
85
6
141
47
0
4
46
1.29
113881--113935
18
3.0
18
75
15
58
65
0
1
32
1.03
125538--125598
16
3.8
16
84
0
86
55
22
9
11
1.64
125534--125586
26
2.0
26
82
13
65
58
20
7
13
1.59
125983--126025
19
2.3
19
95
0
77
27
32
9
30
1.88
126953--127034
29
2.8
29
94
1
137
32
14
9
42
1.79
131716--131797
29
2.8
29
94
1
137
32
14
9
42
1.79
133077--133154
26
3.2
25
73
26
85
51
1
1
46
1.17
133097--133142
20
2.1
22
84
11
60
50
0
2
47
1.13
133081--133158
22
3.4
22
69
19
68
48
1
1
48
1.17
147257--147453
35
5.5
35
77
14
156
44
4
7
44
1.50
147257--147453
34
5.4
36
75
17
160
44
4
7
44
1.50
147405--147504
26
3.7
27
72
16
82
47
4
5
44
1.43
147440--147469
15
1.9
16
93
6
53
40
0
6
53
1.27
147412--147488
25
3.0
25
72
7
73
45
2
5
46
1.39
147329--147580
126
2.0
126
96
3
463
45
5
6
43
1.51
147460--147561
38
2.8
35
83
7
98
48
4
5
41
1.49
147553--147636
41
2.1
40
86
6
116
42
3
3
50
1.37
149008--149065
26
2.2
26
87
12
82
8
5
5
81
0.99
156041--156080
22
1.9
20
85
10
53
47
0
10
42
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168183--168228
21
2.2
21
100
0
92
23
13
19
43
1.86
169176--169209
2
17.0
2
100
0
68
50
0
0
50
1.00
170265--170487
2
111.0
2
74
12
181
43
5
3
48
1.41
170246--170360
22
5.1
22
79
13
51
41
4
1
52
1.31
171180--171218
16
2.5
16
87
4
53
41
23
15
20
1.90
171692--171717
2
13.0
2
100
0
52
50
0
0
50
1.00
173880--173961
29
2.8
29
83
1
101
32
13
10
42
1.79
176898--177026
59
2.2
59
79
8
145
38
6
24
30
1.80
179430--179517
3
30.3
3
86
11
130
0
32
0
67
0.91
179430--179517
14
6.5
14
87
11
130
0
32
0
67
0.91
187984--188015
4
8.0
4
92
0
55
28
0
0
71
0.86

Tables:   1

The End!