Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002172.1 Hibiscus syriacus cultivar Beakdansim tig00004428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84475

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3583--3733
75
2.0
75
97
0
284
26
18
31
23
1.98
10376--10417
14
2.9
15
78
7
50
35
19
2
42
1.64
18573--18726
30
5.0
30
77
14
170
47
14
12
24
1.80
18637--18711
37
2.1
35
85
7
98
44
12
16
28
1.83
22532--22577
20
2.4
19
83
16
60
36
2
4
56
1.31
22453--22574
64
1.9
64
81
9
151
31
3
7
58
1.42
23032--23139
29
3.7
29
75
6
83
58
0
2
37
1.19
23069--23138
35
2.0
36
86
8
101
64
1
1
32
1.11
23090--23148
29
2.0
29
87
6
84
55
1
1
40
1.20
24432--24456
4
6.2
4
100
0
50
76
0
0
24
0.80
29650--29735
3
28.7
3
80
0
82
8
32
24
34
1.85
29643--29729
21
4.1
21
84
0
120
10
32
22
34
1.88
31608--31829
111
2.0
111
92
1
374
46
10
6
35
1.65
32094--32202
50
2.2
50
88
0
155
21
29
35
13
1.92
32715--33396
112
6.1
112
89
1
991
45
12
15
26
1.82
33273--33722
182
2.5
178
86
3
602
43
12
15
28
1.83
37080--37128
23
2.2
22
82
10
55
38
8
2
51
1.43
38409--38571
84
1.9
84
84
0
218
34
12
26
26
1.92
40802--40835
17
2.1
16
88
5
50
14
17
5
61
1.52
46286--46413
53
2.4
55
85
5
197
30
28
12
28
1.93
46375--47075
51
13.5
51
82
6
757
23
23
19
32
1.97
46385--47075
104
6.6
104
85
5
844
24
23
19
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47457--47654
36
5.5
36
86
2
238
20
19
23
36
1.95
48829--49080
125
2.0
124
86
2
353
23
25
17
34
1.96
60129--60162
17
2.1
16
88
5
50
14
17
5
61
1.52
67778--68071
145
2.0
145
97
0
552
31
18
11
38
1.87
68991--69110
30
4.0
30
79
3
98
37
7
15
39
1.76
80932--80962
2
15.5
2
93
0
53
48
3
48
0
1.17

Tables:   1

The End!