Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002173.1 Hibiscus syriacus cultivar Beakdansim tig00004429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62442

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4388--4445
21
2.7
22
84
13
84
13
25
17
43
1.86
5006--5048
22
2.0
22
90
0
68
37
11
30
20
1.89
10755--10812
14
4.4
14
72
16
61
12
10
15
62
1.55
10756--10801
24
1.9
24
95
0
83
10
8
15
65
1.47
10762--10810
24
2.0
24
88
0
71
10
12
14
63
1.53
11926--11970
22
2.0
22
83
8
56
51
0
4
44
1.21
12529--12608
23
3.4
23
84
8
99
13
8
16
61
1.56
12623--12696
31
2.4
31
97
0
139
50
21
10
17
1.77
13795--13900
25
4.1
26
75
15
78
43
4
0
51
1.22
13826--13883
23
2.5
23
86
8
73
39
5
0
55
1.22
13826--13898
23
3.0
24
78
17
71
41
4
0
54
1.19
14064--14125
31
2.0
31
87
0
88
56
4
6
32
1.46
15186--15258
36
2.0
37
86
5
105
47
4
1
46
1.30
15867--15941
38
2.0
37
84
5
98
48
4
1
46
1.29
19306--19425
59
2.0
59
100
0
240
28
29
15
27
1.96
26222--26272
26
2.0
26
92
0
84
15
25
15
43
1.86
29394--29452
29
2.0
29
96
0
109
54
25
0
20
1.45
31217--31254
12
3.2
12
96
0
67
42
7
36
13
1.73
33322--33349
14
2.0
14
100
0
56
50
7
0
42
1.30
33402--33432
16
1.9
16
93
0
53
19
6
22
51
1.69
33926--33968
20
2.2
20
87
4
61
65
18
11
4
1.42
41592--41664
2
36.5
2
100
0
146
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42657--42719
19
3.3
19
76
12
58
36
4
0
58
1.19
44752--44796
15
3.0
15
83
6
56
24
20
15
40
1.91
50939--51026
45
2.0
45
90
4
142
26
26
19
28
1.99
52423--52460
19
2.0
20
89
5
60
63
0
26
10
1.27
55435--55472
17
2.2
17
100
0
76
10
23
47
18
1.79
55404--55445
7
6.0
7
94
0
66
33
28
28
9
1.88
55447--55500
14
4.3
13
78
21
62
11
24
48
16
1.79
55491--55566
19
3.9
19
91
3
116
28
32
25
13
1.93
55491--55538
10
5.0
10
82
7
64
25
37
27
10
1.88
55488--55566
9
8.3
9
79
10
86
27
31
26
13
1.94

Tables:   1

The End!