genome.fa.s2174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002174.1 Hibiscus syriacus cultivar Beakdansim tig00004431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50563

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11705--11761	23	2.5	23	100	0	114	19	42	14	24	1.88
12417--12465	20	2.5	20	80	6	55	53	6	12	28	1.62
13857--13894	20	1.9	20	94	0	67	15	34	28	21	1.94
14766--14820	18	2.9	19	86	10	69	25	18	18	38	1.93
14787--14821	18	1.9	18	100	0	70	25	11	22	40	1.88
14793--14837	18	2.4	18	85	3	54	31	15	15	37	1.89
16719--16753	18	1.9	18	88	0	52	20	20	34	25	1.96
20306--20340	2	17.5	2	87	0	52	42	0	5	51	1.25
20886--20992	56	1.9	56	100	0	214	26	16	9	47	1.77
22870--22911	20	2.1	20	86	0	57	28	9	7	54	1.59
23030--23215	92	2.0	94	94	4	331	33	17	17	31	1.93
23407--23461	21	2.6	21	77	8	58	34	21	21	21	1.97
23449--23697	20	12.4	20	84	5	245	37	25	17	18	1.93
24390--24436	24	2.0	24	87	8	69	25	14	21	38	1.92
24611--24635	12	2.1	12	100	0	50	72	0	28	0	0.86
26933--27051	19	6.4	19	83	13	167	47	18	20	13	1.81
26933--27053	39	3.3	39	90	6	173	47	19	20	13	1.82
27090--27176	19	4.8	19	83	13	130	13	21	16	48	1.80
27072--27176	52	2.0	52	100	0	210	13	23	17	45	1.83
27267--27303	14	2.6	14	91	0	65	45	21	0	32	1.52
29185--29338	19	8.6	19	75	14	139	45	22	20	11	1.82
29260--29316	14	3.7	14	75	20	51	43	22	22	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29203--29333	33	3.8	33	89	5	181	46	22	21	9	1.80
29202--29338	52	2.6	51	74	7	141	45	21	21	10	1.81
29350--29408	14	3.9	14	76	20	64	6	16	28	47	1.72
29334--29457	33	3.7	33	91	1	185	8	17	27	45	1.78
29334--29425	19	5.4	18	72	24	83	7	17	28	46	1.75
29383--29439	14	3.7	14	72	20	51	8	22	24	43	1.81
29555--29870	93	3.4	93	99	0	614	45	18	14	21	1.85
31561--31617	14	3.7	14	75	20	60	43	22	24	8	1.81
31553--31634	33	2.5	33	100	0	164	47	19	23	9	1.79
31575--31639	19	3.7	19	74	19	77	44	21	23	10	1.83
31662--31735	21	3.5	21	77	14	80	14	17	17	50	1.79
31815--31885	33	2.2	33	94	0	124	47	16	23	11	1.79
32265--32436	20	8.6	20	85	5	213	19	19	26	34	1.95
40698--40747	25	2.0	25	88	0	73	36	14	18	32	1.90
48494--48558	32	2.0	32	100	0	130	32	24	9	33	1.87

Tables:   1

The End!