genome.fa.s2175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002175.1 Hibiscus syriacus cultivar Beakdansim tig00004433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90297

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869--1949	29	2.8	29	86	0	108	32	13	11	43	1.79
4867--4995	59	2.2	59	79	8	145	38	6	24	30	1.80
7410--7497	3	29.3	3	100	0	176	0	32	0	67	0.91
16337--16363	4	6.8	4	100	0	54	25	0	0	74	0.83
23843--23890	23	2.1	23	88	0	69	35	12	18	33	1.89
24315--24377	23	2.7	23	92	0	99	38	20	4	36	1.74
24746--24806	21	2.7	23	85	10	90	40	19	3	36	1.68
24736--24806	23	3.2	23	82	8	92	42	21	2	33	1.67
23957--25006	431	2.5	430	96	1	1918	38	11	7	41	1.70
24823--24869	21	2.2	22	81	11	62	36	8	12	42	1.74
25149--25213	24	2.7	24	80	2	85	41	13	9	35	1.77
27673--28010	183	1.8	183	89	1	534	33	16	13	36	1.88
29857--31016	199	5.9	199	95	2	2015	31	16	15	36	1.90
31133--31181	19	2.6	19	93	0	80	57	10	2	30	1.43
33075--33123	21	2.3	21	82	0	62	16	32	14	36	1.89
35345--35387	20	2.3	18	85	14	61	20	16	11	51	1.75
35516--35561	20	2.3	20	89	10	76	17	17	10	54	1.70
37324--37351	14	2.0	14	100	0	56	50	7	0	42	1.30
38028--38081	19	2.8	19	71	0	63	55	1	1	40	1.21
38761--38839	23	3.8	21	73	20	67	45	8	5	40	1.57
38770--38827	18	3.0	18	79	20	64	44	10	5	39	1.61
40898--40932	18	1.9	18	88	0	52	22	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49730--49767	16	2.4	16	100	0	76	10	39	13	36	1.79
67530--67575	18	2.6	18	86	6	67	60	6	6	26	1.46
71071--71120	2	26.5	2	77	18	54	50	2	0	48	1.12
79556--79622	22	3.0	22	79	12	59	64	1	0	34	1.03
79557--79609	15	3.5	15	78	14	63	62	1	0	35	1.06
80471--80668	39	5.1	39	93	1	317	30	13	27	28	1.94

Tables:   1

The End!