genome.fa.s2176.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002176.1 Hibiscus syriacus cultivar Beakdansim tig00004435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65208

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553--581	2	14.5	2	100	0	58	51	0	0	48	1.00
2534--2569	12	3.0	12	87	0	54	30	8	25	36	1.85
9556--9588	15	2.2	15	94	0	57	15	21	33	30	1.94
11132--11176	22	2.0	22	91	0	72	31	11	20	37	1.87
11238--11268	4	7.8	4	92	0	53	54	25	19	0	1.44
12209--12389	21	8.7	21	82	2	222	22	16	27	34	1.95
12209--12365	62	2.5	62	94	0	287	21	17	26	34	1.95
12209--12389	41	4.4	42	82	2	204	22	16	27	34	1.95
12379--12469	22	4.4	22	70	13	93	19	19	23	37	1.94
12574--12624	6	8.0	6	87	12	75	31	49	19	0	1.49
12578--12649	15	5.0	15	80	5	78	27	45	25	1	1.61
12584--12649	21	3.0	21	93	6	105	27	45	25	1	1.62
13248--13333	19	4.4	19	77	8	100	43	19	18	18	1.89
13342--13483	41	3.5	41	95	0	239	38	22	17	21	1.94
13304--13476	82	2.1	80	81	8	204	38	21	17	21	1.93
13345--13454	20	5.4	20	66	4	76	40	21	18	20	1.92
13342--13487	21	7.1	21	66	3	100	38	23	17	21	1.93
19649--19694	23	2.0	23	88	12	69	67	4	13	15	1.38
39755--39991	41	5.8	41	71	12	157	35	18	19	26	1.95
39836--39908	21	3.5	21	79	3	76	23	21	17	36	1.94
39755--40009	20	12.6	20	76	9	169	34	19	19	26	1.96
40564--40608	19	2.4	19	88	0	63	46	26	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40609--40710	52	1.9	53	88	2	152	11	22	21	44	1.85
40659--40726	20	3.5	20	89	2	93	14	22	23	39	1.91
40604--40735	19	7.1	19	80	11	130	12	22	19	44	1.85
44263--44298	14	2.6	14	95	0	63	30	0	25	44	1.54
44405--44541	19	7.7	19	76	17	134	45	21	20	12	1.84
44405--44541	33	4.0	33	83	6	159	45	21	20	12	1.84
44405--44541	52	2.7	50	73	8	132	45	21	20	12	1.84
44551--44677	33	3.9	32	85	8	184	14	22	18	43	1.87
44544--44676	66	2.0	66	95	0	239	16	22	18	42	1.89
46967--46991	12	2.1	12	100	0	50	0	28	0	72	0.86
48004--48075	20	3.5	20	90	1	99	40	15	22	22	1.91
48064--48121	20	2.9	20	89	0	71	29	24	20	25	1.99
48060--48130	20	3.5	20	82	0	70	35	22	19	22	1.96
48344--48419	20	3.8	20	71	13	66	42	19	19	18	1.90
48438--48562	19	6.8	19	90	6	197	15	22	16	46	1.83
50146--50239	42	2.2	42	84	1	125	21	14	42	21	1.88
50576--50614	20	2.0	20	89	0	60	33	25	12	28	1.93
50604--50668	20	3.3	19	78	6	76	40	23	24	12	1.89
50699--50829	19	7.3	19	70	18	84	12	19	22	44	1.85
50716--50774	14	3.9	14	76	20	64	10	16	23	49	1.77
50699--50790	33	2.8	33	98	0	175	11	18	21	47	1.80
50775--50829	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51369--51416	18	2.7	18	93	0	87	14	12	45	27	1.81
52736--52778	20	2.2	20	91	0	68	53	16	18	11	1.72
53057--53100	22	2.0	22	95	0	79	18	15	45	20	1.85
53293--53359	20	3.3	20	87	0	98	28	11	31	28	1.92
53273--53404	41	3.2	41	78	2	140	23	13	26	36	1.92
53399--53462	21	3.1	21	90	2	94	23	21	15	39	1.92
55971--56011	17	2.4	17	87	4	55	60	4	0	34	1.18
55971--56045	18	4.2	17	75	20	64	57	6	1	34	1.33
56024--56063	16	2.5	16	88	8	55	57	10	0	32	1.32
55983--56061	18	4.4	18	67	24	51	56	8	1	32	1.38
56424--56479	4	14.2	4	80	10	62	25	0	1	73	0.93
56424--56473	22	2.2	23	92	3	84	26	0	2	72	0.96
56430--56481	22	2.4	21	74	22	54	25	0	1	73	0.94
60942--61461	197	2.6	200	80	4	597	33	20	10	36	1.87
61659--61729	25	2.9	24	79	10	72	49	1	4	45	1.30

Tables:   1

The End!