genome.fa.s2177.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002177.1 Hibiscus syriacus cultivar Beakdansim tig00004436_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192623

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6539--6572	16	2.1	17	88	5	52	29	2	5	61	1.34
16862--16891	2	15.0	2	100	0	60	50	0	0	50	1.00
19900--20292	74	5.4	72	77	12	326	37	3	4	54	1.39
20151--20335	75	2.7	64	73	16	172	38	4	3	52	1.39
20025--20292	145	1.8	148	84	5	373	36	4	4	54	1.41
20388--20426	19	2.0	20	90	5	62	66	0	0	33	0.92
21314--21355	22	2.0	21	86	13	59	28	0	7	64	1.20
30244--30280	12	3.0	12	96	4	65	16	56	16	10	1.66
30324--30371	23	2.1	23	92	0	78	52	0	0	47	1.00
30370--30423	12	4.6	12	83	4	56	25	46	14	12	1.81
31545--31723	60	3.0	61	75	8	152	40	5	20	34	1.74
34037--34086	24	2.2	22	89	7	73	28	6	10	56	1.56
34043--34093	24	2.1	24	96	0	93	33	7	9	49	1.65
35052--35166	40	2.9	40	85	0	149	45	10	2	41	1.52
35061--35129	20	3.5	20	68	7	68	49	8	2	39	1.49
35088--35149	20	3.1	19	70	9	52	46	8	1	43	1.42
40406--40434	2	14.5	2	100	0	58	51	0	0	48	1.00
43385--43433	2	24.5	2	100	0	98	48	0	0	51	1.00
52217--52243	3	9.0	3	100	0	54	66	33	0	0	0.92
55126--55210	42	2.0	42	100	0	170	36	14	4	44	1.66
61814--61843	15	2.0	15	100	0	60	13	26	46	13	1.80
72864--73030	60	2.8	60	80	3	167	41	4	20	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81570--81628	29	2.0	29	96	0	109	50	13	11	23	1.74
90957--90990	17	2.0	17	88	0	50	29	5	0	64	1.17
90951--91007	24	2.4	24	76	5	62	33	5	1	59	1.30
92333--92410	38	2.1	38	83	7	97	47	3	1	47	1.28
106978--107011	17	1.9	18	94	5	61	38	5	0	55	1.24
109011--109072	2	31.0	2	100	0	124	50	0	0	50	1.00
116299--116394	18	5.3	18	64	22	58	26	8	30	35	1.86
116294--116493	36	5.6	35	90	3	276	27	8	29	35	1.85
116295--116486	72	2.7	72	94	0	321	27	8	29	34	1.86
119594--119749	31	5.0	31	94	1	260	37	23	19	19	1.95
120682--120726	21	2.1	21	87	0	63	15	24	28	31	1.96
123887--124013	31	4.1	31	93	2	211	38	22	18	19	1.93
124946--124990	21	2.1	21	87	0	63	15	24	28	31	1.96
129066--129104	20	2.0	19	90	5	60	38	12	5	43	1.65
133817--133892	30	2.6	29	81	10	91	40	5	3	50	1.44
136336--136390	17	3.1	17	84	12	58	67	1	1	29	1.11
137557--137610	27	2.0	27	92	7	92	33	3	1	61	1.25
137559--137618	27	2.2	27	85	5	77	35	5	5	55	1.44
138197--138247	23	2.2	23	83	13	61	21	3	13	60	1.49
141774--141812	16	2.4	16	95	0	69	7	10	23	58	1.56
143226--143255	2	15.0	2	100	0	60	50	0	0	50	1.00
146797--146826	14	2.1	14	93	0	51	50	6	0	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148775--148874	47	2.2	44	80	16	116	19	8	21	52	1.71
151984--152025	13	3.0	14	79	10	50	9	11	0	78	0.96
165079--165105	2	13.5	2	100	0	54	51	0	0	48	1.00
170678--170828	75	2.0	75	97	0	284	26	18	31	23	1.98
171391--171446	26	2.2	26	90	0	85	46	17	25	10	1.80
171399--171448	26	1.9	26	95	0	91	46	20	22	12	1.83
177504--177545	14	2.9	15	78	7	50	35	19	2	42	1.64
182844--182929	2	43.5	2	97	2	165	50	0	0	50	1.00
185722--185876	29	5.1	29	76	16	154	46	16	12	24	1.82
188948--188993	20	2.4	19	83	16	60	36	2	4	56	1.31
188869--188990	64	1.9	64	81	9	151	31	3	7	58	1.42
189469--189543	34	2.2	35	84	11	95	62	1	2	33	1.17
189460--189573	29	3.7	32	75	14	98	56	2	4	36	1.33
190809--190846	4	9.8	4	83	16	53	71	0	0	28	0.87

Tables:   1

The End!