Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002178.1 Hibiscus syriacus cultivar Beakdansim tig00004437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56358

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3077--3106
11
2.9
10
90
9
51
26
10
3
60
1.45
5680--5718
18
2.2
18
90
0
60
46
7
20
25
1.77
10706--11278
5
115.8
5
96
3
1054
39
19
0
40
1.52
10694--11402
5
152.5
4
90
7
149
39
16
1
42
1.56
11269--11358
14
6.6
14
68
15
55
37
2
7
52
1.43
11353--11412
22
2.7
23
77
10
63
38
1
5
55
1.32
11331--11456
11
11.7
11
72
18
56
37
3
3
55
1.34
11387--11452
17
3.9
17
70
21
57
36
3
3
57
1.29
14703--14772
32
2.2
32
84
5
88
38
4
0
57
1.19
14726--14763
11
3.5
11
85
7
51
42
2
0
55
1.14
14772--14813
5
8.6
5
84
5
59
2
2
35
59
1.23
14872--14906
17
2.1
17
89
10
54
31
2
5
60
1.35
14817--14965
15
9.1
17
67
25
56
37
2
3
56
1.30
14831--14954
11
11.4
11
70
17
50
37
3
3
55
1.32
15402--15442
19
2.2
19
90
0
64
63
12
14
9
1.52
36828--36873
3
15.3
3
100
0
92
32
0
0
67
0.91
38883--38927
21
2.1
21
91
0
72
22
20
4
53
1.63
41870--41915
17
2.6
17
79
3
56
50
4
2
43
1.34
43222--43644
44
9.7
44
88
3
622
34
18
6
40
1.77
43704--43736
17
2.0
16
94
5
57
36
24
0
39
1.56
47311--47351
21
2.0
21
90
0
64
31
21
17
29
1.96
47704--48004
44
6.8
44
87
4
410
35
20
6
37
1.78

Tables:   1

The End!