genome.fa.s2180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002180.1 Hibiscus syriacus cultivar Beakdansim tig00004441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140157

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4763--4833	36	2.0	36	97	0	133	22	25	11	40	1.87
26063--26512	229	2.0	228	94	1	785	45	8	7	39	1.61
26578--26624	20	2.4	19	89	10	76	55	10	17	17	1.69
26745--26791	20	2.4	19	79	10	58	55	8	17	19	1.67
29091--29156	33	2.0	33	87	0	96	28	1	45	24	1.62
30947--30990	19	2.4	19	92	3	72	31	2	9	56	1.43
31073--32490	199	7.1	199	97	0	2639	37	14	15	32	1.88
33942--34032	12	7.4	12	79	8	67	35	7	35	21	1.83
33953--34035	15	5.7	15	80	8	91	36	6	34	22	1.79
35396--36242	183	4.7	183	96	2	1555	34	15	15	34	1.89
35396--36242	364	2.3	365	96	2	1553	34	15	15	34	1.89
38783--38845	23	2.7	23	90	0	90	36	6	19	38	1.77
38783--38855	23	3.2	23	86	3	85	35	5	19	39	1.75
39210--39274	23	2.8	23	90	0	94	35	7	18	38	1.80
39477--39513	18	2.1	18	89	0	56	32	5	10	51	1.60
39469--39515	24	2.0	24	86	0	67	34	4	14	46	1.64
39858--39896	20	2.0	20	89	0	60	25	15	10	48	1.76
47250--47274	12	2.1	12	100	0	50	56	8	8	28	1.57
56299--56386	40	2.2	39	82	7	106	15	7	28	47	1.74
56411--56469	27	2.2	27	96	0	109	16	8	30	44	1.78
62649--62674	2	13.0	2	100	0	52	50	0	0	50	1.00
68665--68706	22	1.9	22	85	0	57	61	11	11	14	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72264--72334	33	2.2	33	97	0	133	39	5	14	40	1.69
72276--72354	33	2.5	31	88	8	108	31	6	13	48	1.68
85452--85497	21	2.2	21	92	0	74	19	8	6	65	1.43
85523--85565	21	2.0	21	90	0	68	58	0	2	39	1.11
90442--90496	17	3.2	16	85	12	56	72	0	3	23	1.00
90439--90493	3	18.7	3	78	14	53	70	0	3	25	1.03
90619--90880	37	6.9	36	73	14	179	43	5	4	46	1.46
90688--90880	37	5.3	35	79	8	192	43	5	4	47	1.46
90686--90885	74	2.7	73	83	7	235	43	5	4	47	1.45
101707--101849	60	2.4	60	83	6	157	32	23	4	39	1.76
112328--112697	183	2.0	182	82	4	449	30	27	11	30	1.92
112157--112907	393	1.9	396	82	4	962	30	26	11	31	1.92
112510--112992	210	2.3	210	83	3	598	30	25	12	31	1.92
112510--113168	210	3.1	208	78	7	566	30	26	12	30	1.93
114215--114263	14	3.5	14	88	0	71	18	12	10	59	1.60
115174--115210	16	2.3	16	95	0	65	8	13	18	59	1.58
115277--115307	16	1.9	16	100	0	62	9	12	19	58	1.62
115647--115707	23	2.9	20	74	23	54	31	1	0	67	1.01
116030--116081	21	2.5	21	78	12	54	46	3	0	50	1.20
123633--123875	121	2.0	122	91	0	398	41	11	12	34	1.79
125119--125151	15	2.2	16	89	10	52	36	0	36	27	1.57
128748--128806	22	2.7	21	82	10	57	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134154--134211	17	3.4	16	78	19	64	29	0	0	70	0.87
135733--135794	30	2.1	30	87	6	90	17	9	11	61	1.56
135999--136041	19	2.3	19	83	0	50	25	4	9	60	1.47

Tables:   1

The End!