Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002181.1 Hibiscus syriacus cultivar Beakdansim tig00004444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42264

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15245--15333
32
2.9
31
89
3
126
32
21
21
24
1.98
15621--15646
2
13.0
2
100
0
52
50
0
0
50
1.00
18831--18881
20
2.6
19
78
6
57
45
3
5
45
1.46
23232--23272
20
2.2
20
86
8
59
36
4
0
58
1.20
24042--24097
14
4.3
14
76
17
66
10
12
23
53
1.69
24049--24118
24
2.9
24
87
4
97
12
10
18
58
1.62
24842--24900
10
6.7
10
71
28
62
8
11
22
57
1.61
24848--24896
16
3.1
16
100
0
98
6
12
24
57
1.58
24842--24900
26
2.3
26
85
5
75
8
11
22
57
1.61
24966--24998
16
2.1
16
100
0
66
6
12
24
57
1.57
29373--29415
20
2.3
19
88
11
70
23
30
9
37
1.86
29378--29415
20
1.9
20
100
0
76
23
28
10
36
1.88
28115--29434
662
2.0
654
89
2
1989
35
14
11
38
1.83
37146--37198
6
8.5
6
82
17
56
30
49
15
5
1.67
37138--37185
22
2.2
22
100
0
96
31
41
14
12
1.83
37695--37797
6
17.5
6
98
1
192
0
16
51
32
1.45
37810--38020
20
10.0
22
79
13
225
18
18
28
35
1.94
37823--38085
20
12.8
19
73
17
181
17
19
26
37
1.93
37823--38020
82
2.4
84
93
1
346
17
18
28
35
1.94
37823--38020
42
4.8
42
93
2
346
17
18
28
35
1.94
41656--41751
28
3.3
29
75
11
90
37
13
11
37
1.81

Tables:   1

The End!