genome.fa.s2182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002182.1 Hibiscus syriacus cultivar Beakdansim tig00004445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59198

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6275--6380	45	2.3	47	85	6	135	40	17	9	32	1.82
8275--8317	18	2.3	18	88	8	59	51	23	0	25	1.49
10968--11037	21	3.3	21	77	0	68	30	17	14	38	1.89
13090--13146	23	2.5	23	82	0	78	28	19	17	35	1.94
13940--13996	3	19.0	3	89	7	89	36	0	0	63	0.95
13932--13996	21	3.1	21	87	10	98	35	0	0	64	0.94
15600--15632	11	2.8	12	86	9	50	45	0	0	54	0.99
26843--26941	15	6.6	14	78	13	92	79	1	17	2	0.88
26843--26949	17	6.7	15	77	17	83	80	0	16	1	0.86
26856--26949	9	10.3	9	73	15	86	80	1	17	1	0.82
26842--26948	45	2.3	46	82	14	130	79	0	17	1	0.88
26842--26931	45	1.9	47	89	10	141	78	0	18	2	0.85
26867--26943	28	2.8	28	84	13	97	77	1	19	1	0.90
27280--27319	20	1.9	22	90	10	66	30	12	2	55	1.50
27629--28080	114	4.0	114	94	0	751	33	15	19	31	1.93
28767--29329	225	2.5	223	87	4	783	37	15	19	28	1.91
28772--29330	113	4.9	113	84	7	688	37	15	19	28	1.92
29245--29473	124	1.9	119	85	9	320	39	16	20	24	1.91
29676--29726	3	17.0	3	88	8	77	37	0	0	62	0.95
29672--29726	18	3.2	17	90	10	85	36	0	0	63	0.95
35580--35616	15	2.6	14	91	8	65	59	0	0	40	0.97
36778--36815	15	2.4	17	86	8	53	39	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37105--37191	43	2.0	43	97	0	165	19	22	25	32	1.98
37497--37572	36	2.1	36	85	7	100	47	1	3	47	1.29
38711--38746	18	2.0	18	88	0	54	13	0	69	16	1.19
40102--40140	8	4.6	8	84	9	51	71	0	0	28	0.86
40102--40140	17	2.3	17	86	8	53	71	0	0	28	0.86
40102--40143	9	4.9	9	85	5	52	71	0	0	28	0.86
41717--42323	82	7.4	82	86	1	777	24	18	21	35	1.96
42290--43121	90	9.4	89	82	4	914	29	20	18	30	1.96
42290--43121	269	3.1	268	83	3	995	29	20	18	30	1.96
43201--43740	62	8.6	62	85	4	665	34	15	23	27	1.94
43264--43740	253	1.9	252	89	1	740	34	15	23	27	1.94
58040--58086	18	2.5	20	82	6	53	34	40	12	12	1.82

Tables:   1

The End!