Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002184.1 Hibiscus syriacus cultivar Beakdansim tig00004451_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68559

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2958--3207
47
5.2
47
76
8
227
29
23
14
33
1.94
2974--3217
49
5.1
49
76
3
244
29
21
14
33
1.94
2971--3217
96
2.6
97
88
1
372
29
21
14
33
1.93
3222--3512
54
5.4
54
89
0
431
27
20
20
31
1.98
9266--9305
20
2.0
20
85
5
53
35
0
27
37
1.57
9976--10016
14
2.9
14
96
0
73
17
7
24
51
1.70
10993--11027
17
2.1
17
88
0
52
60
5
11
22
1.52
13480--13516
14
2.5
15
86
8
58
56
8
0
35
1.29
15252--15321
30
2.4
30
76
7
72
37
17
4
41
1.69
19305--19542
119
2.0
119
99
0
467
35
23
8
32
1.85
25069--25131
28
2.2
28
97
0
117
41
12
23
22
1.88
27686--27722
17
2.2
17
100
0
74
18
48
21
10
1.78
27730--27824
29
3.3
29
82
1
93
28
7
22
42
1.80
29246--29280
19
1.9
18
88
11
54
34
8
5
51
1.56
35015--35059
22
2.0
22
95
0
81
17
48
22
11
1.78
35905--36191
117
2.5
117
88
2
425
19
16
32
31
1.94
37080--37134
20
2.8
19
88
5
74
36
12
30
20
1.90
39032--39125
24
4.0
24
90
2
136
37
20
18
24
1.94
44221--44296
36
2.1
36
82
7
91
46
1
5
47
1.33
44442--44479
20
1.9
20
88
0
58
21
26
10
42
1.85
51440--51531
34
2.8
32
76
12
80
17
15
8
58
1.61
53964--54014
22
2.4
22
80
6
61
35
21
1
41
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55309--55393
43
2.0
43
85
0
116
35
9
21
34
1.85
59537--59574
3
12.7
3
88
0
58
2
26
0
71
1.00
59626--59657
15
2.1
16
94
5
57
6
21
0
71
1.07
61765--61797
13
2.4
14
90
5
50
51
0
0
48
1.00
62206--62306
44
2.3
43
81
8
116
26
24
11
36
1.90
62290--62440
46
3.5
43
70
19
136
21
23
13
41
1.89
62286--62447
83
2.0
83
88
4
247
22
23
12
41
1.88
62981--63029
22
2.2
22
96
0
89
38
16
14
30
1.88

Tables:   1

The End!