genome.fa.s2185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002185.1 Hibiscus syriacus cultivar Beakdansim tig00004452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60586

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462--1506	19	2.4	18	85	10	56	26	4	11	57	1.52
1628--2697	195	5.5	197	96	2	1900	36	15	16	32	1.90
1628--2710	394	2.8	393	94	3	1915	36	15	16	32	1.90
4157--4218	18	3.4	18	79	0	79	37	9	35	17	1.83
4157--4242	6	14.3	6	77	0	64	37	8	34	19	1.82
4172--4246	3	25.0	3	73	0	60	36	6	34	22	1.81
4160--4238	36	2.2	36	90	0	122	35	8	35	20	1.84
4160--4242	12	6.9	12	83	0	94	36	8	34	20	1.83
5363--5399	19	1.9	19	88	0	56	29	13	8	48	1.71
5703--6509	182	4.4	183	96	0	1476	36	13	16	33	1.88
8988--9041	23	2.3	23	93	0	90	37	5	16	40	1.72
9469--9505	18	2.1	18	89	0	56	32	5	10	51	1.60
9461--9507	24	2.0	24	86	0	67	34	4	14	46	1.64
9761--9847	39	2.2	39	91	0	147	48	19	13	18	1.81
10325--10367	3	14.7	3	85	4	61	37	0	2	60	1.10
11181--11272	44	2.1	44	96	4	170	44	0	42	13	1.43
24412--24513	24	4.5	24	75	15	76	75	0	14	8	1.09
24423--24514	14	6.3	14	77	15	89	76	0	13	10	1.03
24423--24516	7	12.9	7	72	24	70	75	0	13	10	1.04
24427--24485	31	1.9	30	93	3	100	76	0	13	10	1.02
24423--24516	35	2.6	38	83	10	124	75	0	13	10	1.04
24427--24516	31	2.8	32	80	17	98	75	0	14	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25656--25910	105	2.4	105	83	2	314	39	17	18	25	1.91
26074--26119	3	15.7	3	86	4	67	36	0	2	60	1.09
26931--27023	44	2.1	44	98	2	179	45	0	41	12	1.42
29252--29303	23	2.3	23	90	6	79	34	1	19	44	1.62
29665--29737	23	3.2	23	88	0	101	34	4	21	39	1.73
29251--30081	425	1.9	432	95	2	1525	39	7	12	39	1.72
30718--30790	5	14.8	5	76	2	76	23	2	1	72	1.05
30722--30774	20	2.7	20	96	0	97	28	0	1	69	0.99
33981--34043	13	4.5	13	75	16	63	60	9	1	28	1.37
37564--37784	122	1.8	121	94	2	390	38	4	6	50	1.48
40155--40226	22	3.3	22	84	5	92	29	20	25	25	1.99
40165--40225	21	2.9	21	87	2	77	26	24	27	21	1.99
40668--40823	63	2.5	63	82	5	172	28	17	19	33	1.95
41826--41877	26	2.1	24	82	10	61	21	28	28	21	1.98
44692--44802	54	2.1	52	94	3	195	39	10	21	27	1.87
47474--47502	10	3.0	10	95	5	51	72	0	0	27	0.85
48181--48231	18	2.8	18	85	11	68	68	7	0	23	1.15
48181--48232	17	2.8	19	80	14	63	69	7	0	23	1.14
50664--50711	12	4.0	12	88	0	78	54	16	20	8	1.68
54388--54444	12	4.8	12	86	0	69	57	15	15	10	1.64
54391--54444	24	2.2	24	90	0	81	59	14	14	11	1.62
56009--56052	13	3.4	13	78	12	54	11	34	34	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55993--56051	26	2.3	26	90	0	91	11	35	32	20	1.89
59019--59217	36	5.6	35	80	7	197	35	21	23	20	1.96
59012--59211	72	2.8	73	81	6	223	34	23	22	21	1.97

Tables:   1

The End!